Wall clock time and date at job start Tue Mar 31 2020 19:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08999 * 109.99596 * 306.68967 * 3 2 1 5 5 C 1.54315 * 109.77041 * 67.83589 * 3 2 1 6 6 C 1.55160 * 102.86137 * 141.88568 * 5 3 2 7 7 C 1.54915 * 101.58067 * 324.30953 * 6 5 3 8 8 N 1.47015 * 109.88598 * 185.58932 * 3 2 1 9 9 C 1.34776 * 125.64713 * 61.68201 * 8 3 2 10 10 O 1.21354 * 120.00300 * 4.79098 * 9 8 3 11 11 C 1.49456 * 119.99874 * 184.79819 * 9 8 3 12 12 O 1.21340 * 120.00177 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99649 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99950 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.35521 * 324.73189 * 14 13 11 16 16 C 1.54834 * 109.35979 * 205.00283 * 14 13 11 17 17 C 1.50131 * 110.81588 * 201.06158 * 16 14 13 18 18 C 1.52530 * 105.41070 * 97.68366 * 17 16 14 19 19 C 1.46238 * 114.27797 * 270.59069 * 18 17 16 20 20 N 1.50168 * 107.52863 * 58.41214 * 19 18 17 21 21 C 1.36939 * 120.53537 * 109.56431 * 20 19 18 22 22 H 1.08001 * 119.99706 * 154.30906 * 21 20 19 23 23 C 1.38809 * 120.00001 * 334.03220 * 21 20 19 24 24 N 1.31612 * 120.00231 * 348.48351 * 23 21 20 25 25 Si 1.86799 * 119.99889 * 168.48119 * 23 21 20 26 26 H 1.48502 * 109.47509 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47024 * 120.00073 * 25 23 21 28 28 H 1.48500 * 109.47521 * 240.00017 * 25 23 21 29 29 C 1.43431 * 118.92926 * 289.83854 * 20 19 18 30 30 H 1.08996 * 109.47342 * 64.32710 * 1 2 3 31 31 H 1.09000 * 109.47230 * 184.32146 * 1 2 3 32 32 H 1.08999 * 109.47034 * 304.32446 * 1 2 3 33 33 H 1.09006 * 109.46777 * 240.00346 * 2 1 3 34 34 H 1.09000 * 109.47055 * 120.00791 * 2 1 3 35 35 H 1.09005 * 110.92351 * 23.47749 * 5 3 2 36 36 H 1.08991 * 110.74841 * 260.21842 * 5 3 2 37 37 H 1.08994 * 111.00722 * 206.23181 * 6 5 3 38 38 H 1.09004 * 111.03555 * 82.39366 * 6 5 3 39 39 H 1.08998 * 110.36271 * 278.16714 * 7 6 5 40 40 H 1.09000 * 110.45764 * 155.89569 * 7 6 5 41 41 H 0.97000 * 120.00398 * 0.02562 * 13 11 9 42 42 H 1.09000 * 109.21041 * 80.72377 * 16 14 13 43 43 H 1.08997 * 109.17372 * 321.38195 * 16 14 13 44 44 H 1.08996 * 110.24560 * 338.71664 * 17 16 14 45 45 H 1.08999 * 110.25445 * 216.65708 * 17 16 14 46 46 H 1.09003 * 108.52031 * 149.35502 * 18 17 16 47 47 H 1.09002 * 108.40134 * 31.74852 * 18 17 16 48 48 H 1.08993 * 109.84884 * 298.90309 * 19 18 17 49 49 H 1.09003 * 109.89991 * 177.94656 * 19 18 17 50 50 H 0.97000 * 120.00401 * 180.02562 * 24 23 21 51 51 H 1.09000 * 108.16012 * 213.03435 * 29 20 19 52 52 H 1.09002 * 108.15757 * 329.59899 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5874 1.9979 -0.8214 5 6 1.6976 2.1172 1.3449 6 6 2.9527 2.9852 1.6253 7 6 4.0836 2.0871 1.0645 8 7 3.5040 1.4552 -0.1347 9 6 4.2005 0.9741 -1.1834 10 8 3.6148 0.5567 -2.1608 11 6 5.6944 0.9544 -1.1425 12 8 6.2802 1.3720 -0.1653 13 7 6.3909 0.4728 -2.1910 14 6 7.8553 0.4540 -2.1512 15 1 8.2134 1.3324 -1.6143 16 6 8.4083 0.4753 -3.5972 17 6 9.8158 -0.0457 -3.6379 18 6 9.6950 -1.5073 -4.0567 19 6 9.5378 -2.4411 -2.9423 20 7 8.3062 -2.0372 -2.1840 21 6 7.1787 -2.8132 -2.2241 22 1 6.4719 -2.7813 -1.4081 23 6 6.9413 -3.6367 -3.3161 24 7 7.6678 -3.5098 -4.4062 25 14 5.5908 -4.9249 -3.2384 26 1 4.9245 -4.8643 -1.9126 27 1 4.5929 -4.6608 -4.3059 28 1 6.1810 -6.2733 -3.4352 29 6 8.3279 -0.8223 -1.4219 30 1 -0.3634 0.4452 -0.9262 31 1 -0.3634 -1.0247 0.0774 32 1 -0.3633 0.5795 0.8487 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 1.5600 1.3733 2.1297 36 1 0.8101 2.7424 1.2482 37 1 3.0809 3.1529 2.6946 38 1 2.9021 3.9317 1.0869 39 1 4.3632 1.3285 1.7955 40 1 4.9504 2.6902 0.7942 41 1 5.9227 0.1393 -2.9723 42 1 8.3940 1.4989 -3.9716 43 1 7.7771 -0.1473 -4.2312 44 1 10.2737 0.0275 -2.6515 45 1 10.4026 0.5093 -4.3699 46 1 10.5896 -1.7825 -4.6154 47 1 8.8324 -1.6063 -4.7157 48 1 10.4087 -2.3877 -2.2891 49 1 9.4221 -3.4562 -3.3223 50 1 7.5017 -4.0849 -5.1694 51 1 7.6959 -0.9602 -0.5446 52 1 9.3482 -0.6565 -1.0760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034479036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:46 Heat of formation + Delta-G solvation = -43.500531 kcal Electronic energy + Delta-G solvation = -31629.978631 eV Core-core repulsion = 27630.160188 eV Total energy + Delta-G solvation = -3999.818443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.62668 -39.06653 -37.73242 -37.29668 -34.36615 -33.52698 -33.09819 -31.59699 -30.99802 -29.94590 -27.99549 -26.32080 -25.44306 -24.07849 -23.23256 -22.69045 -21.97017 -20.72406 -19.87527 -19.25696 -19.00221 -17.36510 -16.91189 -16.62671 -16.13896 -15.39902 -15.21078 -14.85651 -14.76201 -14.61003 -14.03596 -13.83272 -13.61558 -13.59000 -13.45045 -13.13987 -13.07684 -12.45125 -12.35685 -12.27436 -12.19139 -11.79826 -11.72466 -11.58034 -11.52842 -11.33980 -11.19947 -10.99855 -10.87917 -10.78198 -10.71091 -10.54608 -10.44975 -10.10076 -10.01981 -9.71732 -9.41795 -9.25904 -9.06696 -8.74260 -8.60757 -8.36607 -6.64842 -5.77250 -3.22525 1.81559 2.57345 3.38230 3.46989 3.48850 3.60026 3.82705 4.39760 4.42980 4.50920 4.65642 4.86995 4.99659 5.06918 5.15617 5.26252 5.29956 5.36076 5.42553 5.47464 5.53291 5.56171 5.63646 5.69365 5.81544 5.83764 5.93421 5.94256 6.01113 6.07277 6.09099 6.16607 6.17235 6.24263 6.38828 6.43244 6.50296 6.62815 6.81494 6.89304 6.97217 7.02273 7.10561 7.29821 7.33552 7.68094 7.72158 7.77543 8.02417 8.11509 8.45572 8.48988 9.21355 9.86027 10.39022 11.28246 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004011 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.108653 B = 6978.519494 C = 8611.128377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.137 3.863 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.103 3.897 8 N -0.594 5.594 9 C 0.521 3.479 10 O -0.516 6.516 11 C 0.505 3.495 12 O -0.537 6.537 13 N -0.665 5.665 14 C 0.114 3.886 15 H 0.076 0.924 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.129 4.129 19 C 0.163 3.837 20 N -0.583 5.583 21 C -0.239 4.239 22 H 0.063 0.937 23 C 0.005 3.995 24 N -0.903 5.903 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.152 3.848 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.412 0.588 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.025 0.975 47 H 0.099 0.901 48 H 0.003 0.997 49 H 0.096 0.904 50 H 0.252 0.748 51 H 0.036 0.964 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 12.347 8.507 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.176 4.176 7 C -0.019 4.019 8 N -0.330 5.330 9 C 0.305 3.695 10 O -0.391 6.391 11 C 0.285 3.715 12 O -0.416 6.416 13 N -0.315 5.315 14 C 0.007 3.993 15 H 0.094 0.906 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.167 4.167 19 C 0.040 3.960 20 N -0.304 5.304 21 C -0.369 4.369 22 H 0.081 0.919 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.730 3.270 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.021 3.979 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.249 0.751 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.118 0.882 48 H 0.021 0.979 49 H 0.114 0.886 50 H 0.062 0.938 51 H 0.055 0.945 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.137 12.226 8.435 16.479 hybrid contribution -1.034 -0.831 -0.498 1.417 sum -8.171 11.395 7.937 16.112 Atomic orbital electron populations 1.21700 0.95033 1.01912 1.01706 1.21920 0.96248 0.96042 1.03517 1.21697 0.79855 0.96933 0.98096 0.90404 1.22735 0.98375 0.99188 0.96182 1.22870 0.94522 0.98405 1.01758 1.22532 0.96769 0.96203 0.86388 1.48320 1.06967 1.58591 1.19073 1.20134 0.88675 0.78548 0.82149 1.90760 1.71178 1.45627 1.31577 1.19772 0.87471 0.80017 0.84280 1.90658 1.70818 1.47941 1.32166 1.45889 1.08094 1.58961 1.18556 1.22938 0.77343 1.01068 0.97967 0.90610 1.21687 0.97810 0.99672 0.95700 1.20989 0.95248 0.98319 1.00466 1.21016 1.01862 0.92726 1.01136 1.20240 0.84941 1.00305 0.90505 1.44237 1.10679 1.18611 1.56833 1.19189 0.99421 1.17737 1.00562 0.91947 1.24955 0.98406 1.01037 0.94904 1.69907 1.41606 1.40085 1.03269 0.86257 0.81713 0.81582 0.77456 1.20554 1.21718 1.21736 1.20709 0.97820 0.85793 0.93582 0.92608 0.92462 0.92666 0.90377 0.91684 0.90240 0.90066 0.89734 0.90686 0.91012 0.88529 0.75129 0.94097 0.90060 0.92390 0.93174 0.95636 0.88247 0.97910 0.88638 0.93809 0.94530 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.82 37.16 0.37 -1.02 16 2 C -0.14 -1.71 5.41 -26.73 -0.14 -1.85 16 3 C 0.14 1.61 2.87 -66.96 -0.19 1.41 16 4 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.13 -1.04 5.56 -24.90 -0.14 -1.18 16 6 C -0.14 -1.14 7.08 -24.58 -0.17 -1.31 16 7 C 0.10 1.23 5.89 -2.53 -0.01 1.22 16 8 N -0.59 -8.51 3.07 -163.53 -0.50 -9.01 16 9 C 0.52 9.22 7.64 -11.58 -0.09 9.13 16 10 O -0.52 -10.27 15.64 5.49 0.09 -10.18 16 11 C 0.50 9.37 7.66 -11.58 -0.09 9.28 16 12 O -0.54 -10.18 13.57 5.51 0.07 -10.10 16 13 N -0.67 -12.68 5.07 -52.58 -0.27 -12.95 16 14 C 0.11 2.13 2.91 -66.22 -0.19 1.94 16 15 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 16 C -0.11 -1.99 5.23 -27.19 -0.14 -2.13 16 17 C -0.11 -1.97 5.76 -28.40 -0.16 -2.13 16 18 C -0.13 -2.66 4.99 -30.19 -0.15 -2.81 16 19 C 0.16 3.71 5.24 -5.20 -0.03 3.68 16 20 N -0.58 -13.84 2.61 -175.41 -0.46 -14.30 16 21 C -0.24 -6.31 9.65 -15.06 -0.15 -6.45 16 22 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 23 C 0.00 0.12 5.09 -17.43 -0.09 0.03 16 24 N -0.90 -24.18 9.09 55.49 0.50 -23.68 16 25 Si 0.90 21.80 29.57 -169.99 -5.03 16.77 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.15 3.19 4.74 -4.93 -0.02 3.16 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.42 7.37 -51.93 -0.38 0.04 16 33 H 0.08 1.22 6.87 -51.93 -0.36 0.86 16 34 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 35 H 0.08 0.61 7.76 -51.93 -0.40 0.21 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.26 6.47 -51.93 -0.34 0.93 16 41 H 0.41 8.25 7.91 -40.82 -0.32 7.93 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.70 6.58 -51.93 -0.34 1.35 16 44 H 0.06 1.00 6.28 -51.93 -0.33 0.67 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 2.36 5.28 -51.93 -0.27 2.08 16 48 H 0.00 0.06 8.13 -51.93 -0.42 -0.36 16 49 H 0.10 2.45 5.98 -51.93 -0.31 2.13 16 50 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 51 H 0.04 0.83 7.80 -51.93 -0.41 0.43 16 52 H 0.04 0.78 6.89 -51.93 -0.36 0.42 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -28.62 391.98 -9.91 -38.53 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.82 Total: 8.05 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.41 Total: 10.97 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.72 Total: -59.94 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.62 -9.91 -38.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.970 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds