Wall clock time and date at job start Tue Mar 31 2020 19:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08999 * 109.99596 * 306.68967 * 3 2 1 5 5 C 1.54315 * 109.77041 * 67.83589 * 3 2 1 6 6 C 1.55160 * 102.86137 * 141.88568 * 5 3 2 7 7 C 1.54915 * 101.58067 * 324.30953 * 6 5 3 8 8 N 1.47015 * 109.88598 * 185.58932 * 3 2 1 9 9 C 1.34776 * 125.64713 * 61.68201 * 8 3 2 10 10 O 1.21354 * 120.00300 * 4.79098 * 9 8 3 11 11 C 1.49456 * 119.99874 * 184.79819 * 9 8 3 12 12 O 1.21340 * 120.00177 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99649 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99950 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.35521 * 324.73189 * 14 13 11 16 16 C 1.54834 * 109.35979 * 205.00283 * 14 13 11 17 17 C 1.50131 * 110.81588 * 201.06158 * 16 14 13 18 18 C 1.52530 * 105.41070 * 97.68366 * 17 16 14 19 19 C 1.46238 * 114.27797 * 270.59069 * 18 17 16 20 20 N 1.50168 * 107.52863 * 58.41214 * 19 18 17 21 21 C 1.36939 * 120.53537 * 109.56431 * 20 19 18 22 22 H 1.08001 * 119.99706 * 154.30906 * 21 20 19 23 23 C 1.38809 * 120.00001 * 334.03220 * 21 20 19 24 24 N 1.31612 * 120.00231 * 348.48351 * 23 21 20 25 25 Si 1.86799 * 119.99889 * 168.48119 * 23 21 20 26 26 H 1.48502 * 109.47509 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47024 * 120.00073 * 25 23 21 28 28 H 1.48500 * 109.47521 * 240.00017 * 25 23 21 29 29 C 1.43431 * 118.92926 * 289.83854 * 20 19 18 30 30 H 1.08996 * 109.47342 * 64.32710 * 1 2 3 31 31 H 1.09000 * 109.47230 * 184.32146 * 1 2 3 32 32 H 1.08999 * 109.47034 * 304.32446 * 1 2 3 33 33 H 1.09006 * 109.46777 * 240.00346 * 2 1 3 34 34 H 1.09000 * 109.47055 * 120.00791 * 2 1 3 35 35 H 1.09005 * 110.92351 * 23.47749 * 5 3 2 36 36 H 1.08991 * 110.74841 * 260.21842 * 5 3 2 37 37 H 1.08994 * 111.00722 * 206.23181 * 6 5 3 38 38 H 1.09004 * 111.03555 * 82.39366 * 6 5 3 39 39 H 1.08998 * 110.36271 * 278.16714 * 7 6 5 40 40 H 1.09000 * 110.45764 * 155.89569 * 7 6 5 41 41 H 0.97000 * 120.00398 * 0.02562 * 13 11 9 42 42 H 1.09000 * 109.21041 * 80.72377 * 16 14 13 43 43 H 1.08997 * 109.17372 * 321.38195 * 16 14 13 44 44 H 1.08996 * 110.24560 * 338.71664 * 17 16 14 45 45 H 1.08999 * 110.25445 * 216.65708 * 17 16 14 46 46 H 1.09003 * 108.52031 * 149.35502 * 18 17 16 47 47 H 1.09002 * 108.40134 * 31.74852 * 18 17 16 48 48 H 1.08993 * 109.84884 * 298.90309 * 19 18 17 49 49 H 1.09003 * 109.89991 * 177.94656 * 19 18 17 50 50 H 0.97000 * 120.00401 * 180.02562 * 24 23 21 51 51 H 1.09000 * 108.16012 * 213.03435 * 29 20 19 52 52 H 1.09002 * 108.15757 * 329.59899 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5874 1.9979 -0.8214 5 6 1.6976 2.1172 1.3449 6 6 2.9527 2.9852 1.6253 7 6 4.0836 2.0871 1.0645 8 7 3.5040 1.4552 -0.1347 9 6 4.2005 0.9741 -1.1834 10 8 3.6148 0.5567 -2.1608 11 6 5.6944 0.9544 -1.1425 12 8 6.2802 1.3720 -0.1653 13 7 6.3909 0.4728 -2.1910 14 6 7.8553 0.4540 -2.1512 15 1 8.2134 1.3324 -1.6143 16 6 8.4083 0.4753 -3.5972 17 6 9.8158 -0.0457 -3.6379 18 6 9.6950 -1.5073 -4.0567 19 6 9.5378 -2.4411 -2.9423 20 7 8.3062 -2.0372 -2.1840 21 6 7.1787 -2.8132 -2.2241 22 1 6.4719 -2.7813 -1.4081 23 6 6.9413 -3.6367 -3.3161 24 7 7.6678 -3.5098 -4.4062 25 14 5.5908 -4.9249 -3.2384 26 1 4.9245 -4.8643 -1.9126 27 1 4.5929 -4.6608 -4.3059 28 1 6.1810 -6.2733 -3.4352 29 6 8.3279 -0.8223 -1.4219 30 1 -0.3634 0.4452 -0.9262 31 1 -0.3634 -1.0247 0.0774 32 1 -0.3633 0.5795 0.8487 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 1.5600 1.3733 2.1297 36 1 0.8101 2.7424 1.2482 37 1 3.0809 3.1529 2.6946 38 1 2.9021 3.9317 1.0869 39 1 4.3632 1.3285 1.7955 40 1 4.9504 2.6902 0.7942 41 1 5.9227 0.1393 -2.9723 42 1 8.3940 1.4989 -3.9716 43 1 7.7771 -0.1473 -4.2312 44 1 10.2737 0.0275 -2.6515 45 1 10.4026 0.5093 -4.3699 46 1 10.5896 -1.7825 -4.6154 47 1 8.8324 -1.6063 -4.7157 48 1 10.4087 -2.3877 -2.2891 49 1 9.4221 -3.4562 -3.3223 50 1 7.5017 -4.0849 -5.1694 51 1 7.6959 -0.9602 -0.5446 52 1 9.3482 -0.6565 -1.0760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034479036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:45 Heat of formation + Delta-G solvation = -60.192885 kcal Electronic energy + Delta-G solvation = -31630.702465 eV Core-core repulsion = 27630.160188 eV Total energy + Delta-G solvation = -4000.542277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93334 -40.43847 -39.21646 -38.66851 -35.99578 -34.85273 -34.44592 -32.90468 -32.58502 -31.59891 -28.87385 -28.08755 -26.87982 -25.47420 -24.85142 -23.93834 -22.98122 -21.93548 -21.31624 -20.87730 -20.32697 -18.66401 -18.61802 -18.13990 -17.40237 -17.04883 -16.67411 -16.35260 -16.20720 -15.74142 -15.59114 -15.28371 -15.19713 -14.78961 -14.64558 -14.34704 -14.07195 -14.00943 -13.84410 -13.45120 -13.44156 -13.27614 -13.14974 -13.02367 -12.77002 -12.71678 -12.64099 -12.34976 -12.26977 -12.16182 -12.00158 -11.96394 -11.83745 -11.60750 -11.47928 -11.30669 -11.17586 -10.93160 -10.53935 -10.43849 -10.13595 -9.82864 -8.56974 -7.81714 -5.27229 0.37731 1.30118 1.39807 1.44659 1.50716 2.16470 2.49910 2.54122 3.30362 3.34903 3.59488 3.60380 3.67526 3.84116 3.92727 4.14752 4.15519 4.19620 4.30578 4.39488 4.44671 4.52150 4.54491 4.56560 4.67590 4.70942 4.82306 4.87712 4.91915 4.92378 4.97448 5.03456 5.08357 5.10973 5.14182 5.20211 5.22106 5.29501 5.32691 5.34034 5.41289 5.44582 5.57075 5.59727 5.69012 5.85416 6.07750 6.27374 6.29633 6.45117 6.68300 6.99568 7.20457 7.90580 8.39498 9.20404 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004011 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.108653 B = 6978.519494 C = 8611.128377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.127 3.873 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.094 3.906 8 N -0.589 5.589 9 C 0.514 3.486 10 O -0.550 6.550 11 C 0.503 3.497 12 O -0.542 6.542 13 N -0.671 5.671 14 C 0.121 3.879 15 H 0.092 0.908 16 C -0.102 4.102 17 C -0.103 4.103 18 C -0.122 4.122 19 C 0.166 3.834 20 N -0.593 5.593 21 C -0.242 4.242 22 H 0.043 0.957 23 C -0.031 4.031 24 N -0.910 5.910 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.287 1.287 29 C 0.153 3.847 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.406 0.594 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.067 0.933 48 H 0.020 0.980 49 H 0.063 0.937 50 H 0.247 0.753 51 H 0.012 0.988 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 14.527 10.111 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.025 3.975 4 H 0.093 0.907 5 C -0.153 4.153 6 C -0.162 4.162 7 C -0.027 4.027 8 N -0.322 5.322 9 C 0.297 3.703 10 O -0.428 6.428 11 C 0.284 3.716 12 O -0.421 6.421 13 N -0.320 5.320 14 C 0.014 3.986 15 H 0.110 0.890 16 C -0.140 4.140 17 C -0.140 4.140 18 C -0.160 4.160 19 C 0.043 3.957 20 N -0.315 5.315 21 C -0.373 4.373 22 H 0.061 0.939 23 C -0.227 4.227 24 N -0.557 5.557 25 Si 0.775 3.225 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.214 1.214 29 C 0.024 3.976 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.241 0.759 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.038 0.962 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.031 0.969 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.604 14.438 10.091 19.186 hybrid contribution -0.873 -1.506 -0.907 1.963 sum -8.478 12.933 9.184 17.985 Atomic orbital electron populations 1.21665 0.92575 1.02531 1.02887 1.21886 0.98397 0.96047 1.01272 1.22015 0.78018 0.96910 1.00518 0.90680 1.22769 0.99356 0.99433 0.93779 1.22866 0.92388 0.97658 1.03244 1.22729 0.98108 0.96544 0.85354 1.48527 1.08420 1.56722 1.18524 1.20024 0.88357 0.79083 0.82873 1.90737 1.71463 1.47571 1.33049 1.20019 0.88113 0.79567 0.83950 1.90642 1.71173 1.48126 1.32136 1.45948 1.08325 1.59187 1.18541 1.22825 0.77263 1.00018 0.98485 0.89047 1.21591 0.97488 1.00581 0.94345 1.20950 0.95253 0.96070 1.01758 1.20834 1.00881 0.94582 0.99723 1.20173 0.84946 0.99218 0.91396 1.44284 1.10266 1.19619 1.57322 1.19101 0.99911 1.18445 0.99858 0.93914 1.25386 0.99967 1.02408 0.94972 1.70041 1.42158 1.40235 1.03226 0.85555 0.79948 0.80201 0.76759 1.20958 1.22334 1.21399 1.20715 0.98383 0.85932 0.92588 0.92712 0.92455 0.89855 0.94674 0.91866 0.89148 0.87169 0.87002 0.89842 0.91397 0.89812 0.75891 0.91443 0.93260 0.91401 0.90318 0.94489 0.91478 0.96168 0.91882 0.94305 0.96923 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.82 71.98 0.71 -1.73 16 2 C -0.14 -3.38 5.41 30.59 0.17 -3.21 16 3 C 0.13 2.85 2.87 45.34 0.13 2.98 16 4 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.12 -1.49 5.56 31.78 0.18 -1.32 16 6 C -0.12 -1.63 7.08 31.99 0.23 -1.40 16 7 C 0.09 2.14 5.89 86.86 0.51 2.65 16 8 N -0.59 -16.84 3.07 -789.65 -2.42 -19.26 16 9 C 0.51 18.81 7.64 87.27 0.67 19.47 16 10 O -0.55 -23.04 15.64 -3.26 -0.05 -23.09 16 11 C 0.50 19.10 7.66 87.27 0.67 19.77 16 12 O -0.54 -20.59 13.57 -3.22 -0.04 -20.64 16 13 N -0.67 -26.19 5.07 -438.63 -2.22 -28.41 16 14 C 0.12 4.45 2.91 46.09 0.13 4.58 16 15 H 0.09 3.12 7.58 -2.38 -0.02 3.10 16 16 C -0.10 -3.55 5.23 30.30 0.16 -3.39 16 17 C -0.10 -3.36 5.76 29.51 0.17 -3.19 16 18 C -0.12 -4.94 4.99 28.36 0.14 -4.79 16 19 C 0.17 7.54 5.24 83.58 0.44 7.98 16 20 N -0.59 -28.60 2.61 -708.86 -1.85 -30.45 16 21 C -0.24 -13.19 9.65 84.03 0.81 -12.38 16 22 H 0.04 2.46 7.85 -2.91 -0.02 2.44 16 23 C -0.03 -1.69 5.09 84.86 0.43 -1.26 16 24 N -0.91 -50.09 9.09 21.65 0.20 -49.90 16 25 Si 0.94 46.10 29.57 68.60 2.03 48.13 16 26 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 29 C 0.15 6.43 4.74 87.42 0.41 6.85 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.00 7.37 -2.39 -0.02 0.99 16 33 H 0.03 1.16 6.87 -2.38 -0.02 1.14 16 34 H 0.06 1.53 8.01 -2.39 -0.02 1.51 16 35 H 0.09 1.03 7.76 -2.38 -0.02 1.01 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 2.13 6.47 -2.39 -0.02 2.11 16 41 H 0.41 17.00 7.91 -92.71 -0.73 16.27 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 2.07 6.58 -2.39 -0.02 2.05 16 44 H 0.07 2.12 6.28 -2.39 -0.02 2.10 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.07 3.22 5.28 -2.39 -0.01 3.21 16 48 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 49 H 0.06 3.29 5.98 -2.39 -0.01 3.28 16 50 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 51 H 0.01 0.58 7.80 -2.39 -0.02 0.56 16 52 H 0.06 2.17 6.89 -2.39 -0.02 2.15 16 Total: -1.00 -65.08 391.98 1.77 -63.31 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.18 Total: 28.72 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 5.95 Total: 31.60 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -6.30 Total: -128.02 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.73 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -65.08 1.77 -63.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.112 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds