Wall clock time and date at job start Tue Mar 31 2020 19:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47288 * 2 1 4 4 H 1.09003 * 109.87013 * 55.29925 * 3 2 1 5 5 C 1.54321 * 109.87941 * 294.12348 * 3 2 1 6 6 C 1.55152 * 102.93906 * 218.38899 * 5 3 2 7 7 C 1.54693 * 101.68131 * 35.33849 * 6 5 3 8 8 N 1.47016 * 109.87883 * 176.31660 * 3 2 1 9 9 C 1.34778 * 125.65038 * 298.31736 * 8 3 2 10 10 O 1.21348 * 119.99884 * 354.89910 * 9 8 3 11 11 C 1.49456 * 120.00240 * 174.89453 * 9 8 3 12 12 O 1.21348 * 119.99876 * 0.02562 * 11 9 8 13 13 N 1.34771 * 119.99702 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99436 * 180.27639 * 13 11 9 15 15 H 1.09001 * 109.36062 * 324.45053 * 14 13 11 16 16 C 1.54844 * 109.35863 * 204.72801 * 14 13 11 17 17 C 1.50125 * 110.81642 * 200.92971 * 16 14 13 18 18 C 1.52529 * 105.41766 * 97.67984 * 17 16 14 19 19 C 1.46239 * 114.27715 * 270.59443 * 18 17 16 20 20 N 1.50172 * 107.53216 * 58.40954 * 19 18 17 21 21 C 1.36929 * 120.53811 * 109.61252 * 20 19 18 22 22 H 1.08001 * 119.99808 * 211.18329 * 21 20 19 23 23 C 1.38819 * 120.00338 * 31.18643 * 21 20 19 24 24 N 1.31618 * 119.99867 * 19.99005 * 23 21 20 25 25 Si 1.86795 * 120.00015 * 199.99584 * 23 21 20 26 26 H 1.48498 * 109.47603 * 94.97936 * 25 23 21 27 27 H 1.48505 * 109.47130 * 214.98135 * 25 23 21 28 28 H 1.48501 * 109.47437 * 334.97840 * 25 23 21 29 29 C 1.43436 * 118.92067 * 289.58506 * 20 19 18 30 30 H 1.08990 * 109.47444 * 185.45899 * 1 2 3 31 31 H 1.09007 * 109.46860 * 305.46035 * 1 2 3 32 32 H 1.09005 * 109.46908 * 65.45674 * 1 2 3 33 33 H 1.08999 * 109.47114 * 239.99970 * 2 1 3 34 34 H 1.09003 * 109.46788 * 120.00340 * 2 1 3 35 35 H 1.09000 * 110.72398 * 336.75160 * 5 3 2 36 36 H 1.09007 * 110.71706 * 100.02968 * 5 3 2 37 37 H 1.09007 * 111.00593 * 153.58000 * 6 5 3 38 38 H 1.09007 * 111.00830 * 277.39394 * 6 5 3 39 39 H 1.08991 * 110.39683 * 204.36532 * 7 6 5 40 40 H 1.08994 * 110.23394 * 82.10484 * 7 6 5 41 41 H 0.96998 * 120.00397 * 0.02562 * 13 11 9 42 42 H 1.08999 * 109.20739 * 321.27133 * 16 14 13 43 43 H 1.08998 * 109.21051 * 80.58013 * 16 14 13 44 44 H 1.08994 * 110.25144 * 216.65605 * 17 16 14 45 45 H 1.09005 * 110.25072 * 338.70780 * 17 16 14 46 46 H 1.09002 * 108.51915 * 31.83484 * 18 17 16 47 47 H 1.09000 * 108.52434 * 149.50220 * 18 17 16 48 48 H 1.09002 * 109.84209 * 177.91477 * 19 18 17 49 49 H 1.08991 * 109.84627 * 298.89970 * 19 18 17 50 50 H 0.97002 * 120.00003 * 180.02562 * 24 23 21 51 51 H 1.08996 * 108.16588 * 329.85222 * 29 20 19 52 52 H 1.09002 * 108.15408 * 213.28418 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6134 1.9864 0.8428 5 6 1.6558 2.1350 -1.3245 6 6 2.9042 3.0011 -1.6386 7 6 4.0494 2.0993 -1.1208 8 7 3.5075 1.4539 0.0888 9 6 4.2365 0.9613 1.1098 10 8 3.6818 0.5383 2.1027 11 6 5.7281 0.9358 1.0190 12 8 6.2829 1.3591 0.0262 13 7 6.4570 0.4427 2.0397 14 6 7.9193 0.4233 1.9532 15 1 8.2178 0.2217 0.9244 16 6 8.4734 -0.6899 2.8759 17 6 9.9129 -0.4335 3.2161 18 6 9.8927 0.2362 4.5864 19 6 9.7963 1.6947 4.5414 20 7 8.5382 2.0423 3.7988 21 6 7.4664 2.5804 4.4596 22 1 6.4628 2.3772 4.1163 23 6 7.6698 3.3873 5.5707 24 7 8.8403 3.9569 5.7650 25 14 6.2822 3.6646 6.7902 26 1 6.4069 2.6976 7.9103 27 1 6.3590 5.0494 7.3209 28 1 4.9776 3.4672 6.1089 29 6 8.4777 1.8018 2.3860 30 1 -0.3634 -1.0229 0.0978 31 1 -0.3633 0.5962 0.8371 32 1 -0.3633 0.4269 -0.9349 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4897 1.3986 -2.1107 36 1 0.7748 2.7627 -1.1900 37 1 2.9977 3.1777 -2.7102 38 1 2.8742 3.9430 -1.0908 39 1 4.9232 2.7009 -0.8707 40 1 4.3058 1.3489 -1.8686 41 1 6.0136 0.1039 2.8331 42 1 7.8875 -0.7189 3.7945 43 1 8.3905 -1.6509 2.3681 44 1 10.4626 -1.3735 3.2637 45 1 10.3625 0.2309 2.4781 46 1 9.0420 -0.1499 5.1479 47 1 10.8065 -0.0322 5.1165 48 1 9.7503 2.0938 5.5546 49 1 10.6599 2.1067 4.0194 50 1 8.9825 4.5204 6.5416 51 1 9.4844 1.9031 1.9807 52 1 7.8566 2.5764 1.9360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034479038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:53 Heat of formation + Delta-G solvation = -47.265715 kcal Electronic energy + Delta-G solvation = -31336.837042 eV Core-core repulsion = 27336.855328 eV Total energy + Delta-G solvation = -3999.981713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69166 -39.14718 -37.81411 -37.37016 -34.42615 -33.61144 -33.32197 -31.63599 -30.91884 -30.18650 -28.04641 -26.35782 -25.51352 -24.18766 -23.34707 -22.78579 -22.00222 -20.78072 -20.05381 -19.34110 -19.11064 -17.46453 -16.97089 -16.58621 -16.11401 -15.58653 -15.24603 -15.00401 -14.81340 -14.53762 -14.36924 -13.92917 -13.75180 -13.57187 -13.45060 -13.16389 -13.11711 -12.64761 -12.47411 -12.39306 -12.25701 -11.89948 -11.82716 -11.73111 -11.56181 -11.41125 -11.16596 -11.07428 -10.94685 -10.88509 -10.81382 -10.62714 -10.59545 -10.20970 -9.98545 -9.88388 -9.63660 -9.43456 -9.13888 -8.88070 -8.70685 -8.34358 -6.60642 -5.79480 -3.24519 1.74074 2.50895 3.38536 3.46547 3.49816 3.52797 3.73992 4.36623 4.41009 4.50997 4.61740 4.78287 4.95165 4.98818 5.10301 5.16346 5.21076 5.29631 5.32378 5.39119 5.47527 5.47982 5.54577 5.69146 5.70060 5.75351 5.83612 5.85629 5.95301 5.98142 5.98779 5.99622 6.05355 6.09541 6.29262 6.30037 6.37821 6.48040 6.59455 6.72588 6.73965 6.92605 6.99292 7.03300 7.27536 7.37133 7.61971 7.67177 7.83602 8.01989 8.39189 8.49999 9.17367 9.85950 10.41857 11.27433 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.003593 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.212255 B = 7790.432465 C = 8812.463452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.135 3.865 4 H 0.079 0.921 5 C -0.126 4.126 6 C -0.138 4.138 7 C 0.103 3.897 8 N -0.593 5.593 9 C 0.522 3.478 10 O -0.519 6.519 11 C 0.507 3.493 12 O -0.531 6.531 13 N -0.672 5.672 14 C 0.113 3.887 15 H 0.080 0.920 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.133 4.133 19 C 0.147 3.853 20 N -0.578 5.578 21 C -0.250 4.250 22 H 0.063 0.937 23 C 0.008 3.992 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.278 1.278 29 C 0.150 3.850 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.073 0.927 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.099 0.901 49 H 0.022 0.978 50 H 0.253 0.747 51 H 0.039 0.961 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -7.629 -13.885 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.032 3.968 4 H 0.097 0.903 5 C -0.164 4.164 6 C -0.177 4.177 7 C -0.019 4.019 8 N -0.328 5.328 9 C 0.306 3.694 10 O -0.394 6.394 11 C 0.287 3.713 12 O -0.408 6.408 13 N -0.323 5.323 14 C 0.006 3.994 15 H 0.098 0.902 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.172 4.172 19 C 0.023 3.977 20 N -0.298 5.298 21 C -0.379 4.379 22 H 0.081 0.919 23 C -0.192 4.192 24 N -0.538 5.538 25 Si 0.723 3.277 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.203 1.203 29 C 0.020 3.980 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.245 0.755 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.117 0.883 49 H 0.040 0.960 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.543 -7.445 -13.814 18.366 hybrid contribution -0.957 0.004 1.113 1.468 sum -10.500 -7.441 -12.701 18.081 Atomic orbital electron populations 1.21706 0.94969 1.01910 1.01832 1.21892 0.96301 0.96115 1.03096 1.21741 0.79621 0.96793 0.98638 0.90258 1.22728 0.98478 0.99056 0.96137 1.22845 0.94272 0.98618 1.01917 1.22498 0.97426 0.95978 0.86014 1.48315 1.06784 1.57824 1.19848 1.20092 0.88373 0.78734 0.82211 1.90746 1.72871 1.46336 1.29494 1.19782 0.87372 0.79958 0.84216 1.90679 1.72568 1.46408 1.31195 1.45879 1.07873 1.59722 1.18782 1.23059 0.77316 0.99694 0.99304 0.90151 1.21672 0.97250 0.96115 0.99876 1.20949 0.95394 0.99689 0.98776 1.21084 1.00242 1.00226 0.95667 1.20346 0.86948 0.90079 1.00331 1.43929 1.13624 1.70608 1.01654 1.19087 0.86440 1.22965 1.09430 0.91947 1.24999 0.96580 0.96504 1.01070 1.70033 1.23168 1.31892 1.28706 0.86402 0.82335 0.77062 0.81858 1.21429 1.21848 1.20275 1.20651 0.97933 0.92336 0.87122 0.92529 0.92475 0.92614 0.91818 0.90628 0.90333 0.89971 0.89655 0.90472 0.88347 0.91113 0.75468 0.90872 0.93538 0.92716 0.91490 0.92438 0.94316 0.88302 0.95994 0.93713 0.94331 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.66 37.16 0.36 -0.84 16 2 C -0.14 -1.44 5.39 -26.73 -0.14 -1.58 16 3 C 0.13 1.52 2.89 -66.95 -0.19 1.33 16 4 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 5 C -0.13 -1.01 5.64 -24.90 -0.14 -1.15 16 6 C -0.14 -1.19 7.07 -24.70 -0.17 -1.37 16 7 C 0.10 1.22 5.87 -2.64 -0.02 1.21 16 8 N -0.59 -8.28 3.07 -163.66 -0.50 -8.78 16 9 C 0.52 8.92 7.64 -11.58 -0.09 8.83 16 10 O -0.52 -9.86 15.67 5.50 0.09 -9.77 16 11 C 0.51 9.06 7.67 -11.58 -0.09 8.97 16 12 O -0.53 -9.86 13.59 5.50 0.07 -9.79 16 13 N -0.67 -11.97 5.08 -52.32 -0.27 -12.24 16 14 C 0.11 1.99 2.91 -65.95 -0.19 1.80 16 15 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 16 C -0.11 -1.76 5.23 -27.19 -0.14 -1.90 16 17 C -0.11 -1.73 5.76 -28.40 -0.16 -1.89 16 18 C -0.13 -2.45 5.20 -30.19 -0.16 -2.61 16 19 C 0.15 3.32 5.37 -5.20 -0.03 3.29 16 20 N -0.58 -13.82 2.56 -175.08 -0.45 -14.27 16 21 C -0.25 -6.69 9.54 -15.06 -0.14 -6.83 16 22 H 0.06 1.71 7.91 -52.49 -0.41 1.30 16 23 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 24 N -0.89 -25.58 11.28 55.49 0.63 -24.95 16 25 Si 0.89 21.94 29.60 -169.99 -5.03 16.91 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.15 3.17 4.78 -4.66 -0.02 3.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.37 7.61 -51.93 -0.40 -0.02 16 33 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.08 1.00 6.92 -51.93 -0.36 0.64 16 35 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.37 6.50 -51.93 -0.34 1.03 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.41 7.33 7.91 -40.82 -0.32 7.01 16 42 H 0.07 1.27 6.59 -51.93 -0.34 0.92 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.07 6.29 -51.93 -0.33 0.75 16 46 H 0.06 1.12 6.93 -51.93 -0.36 0.76 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.10 2.55 5.67 -51.93 -0.29 2.25 16 49 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.04 0.78 6.89 -51.93 -0.36 0.43 16 52 H 0.04 1.01 7.83 -51.93 -0.41 0.60 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -30.43 396.03 -9.83 -40.26 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.92 Total: 6.15 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.42 Total: 10.51 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.59 Total: -60.25 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.16 Total: -19.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.43 -9.83 -40.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.002 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds