Wall clock time and date at job start Tue Mar 31 2020 19:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47288 * 2 1 4 4 H 1.09003 * 109.87013 * 55.29925 * 3 2 1 5 5 C 1.54321 * 109.87941 * 294.12348 * 3 2 1 6 6 C 1.55152 * 102.93906 * 218.38899 * 5 3 2 7 7 C 1.54693 * 101.68131 * 35.33849 * 6 5 3 8 8 N 1.47016 * 109.87883 * 176.31660 * 3 2 1 9 9 C 1.34778 * 125.65038 * 298.31736 * 8 3 2 10 10 O 1.21348 * 119.99884 * 354.89910 * 9 8 3 11 11 C 1.49456 * 120.00240 * 174.89453 * 9 8 3 12 12 O 1.21348 * 119.99876 * 0.02562 * 11 9 8 13 13 N 1.34771 * 119.99702 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99436 * 180.27639 * 13 11 9 15 15 H 1.09001 * 109.36062 * 324.45053 * 14 13 11 16 16 C 1.54844 * 109.35863 * 204.72801 * 14 13 11 17 17 C 1.50125 * 110.81642 * 200.92971 * 16 14 13 18 18 C 1.52529 * 105.41766 * 97.67984 * 17 16 14 19 19 C 1.46239 * 114.27715 * 270.59443 * 18 17 16 20 20 N 1.50172 * 107.53216 * 58.40954 * 19 18 17 21 21 C 1.36929 * 120.53811 * 109.61252 * 20 19 18 22 22 H 1.08001 * 119.99808 * 211.18329 * 21 20 19 23 23 C 1.38819 * 120.00338 * 31.18643 * 21 20 19 24 24 N 1.31618 * 119.99867 * 19.99005 * 23 21 20 25 25 Si 1.86795 * 120.00015 * 199.99584 * 23 21 20 26 26 H 1.48498 * 109.47603 * 94.97936 * 25 23 21 27 27 H 1.48505 * 109.47130 * 214.98135 * 25 23 21 28 28 H 1.48501 * 109.47437 * 334.97840 * 25 23 21 29 29 C 1.43436 * 118.92067 * 289.58506 * 20 19 18 30 30 H 1.08990 * 109.47444 * 185.45899 * 1 2 3 31 31 H 1.09007 * 109.46860 * 305.46035 * 1 2 3 32 32 H 1.09005 * 109.46908 * 65.45674 * 1 2 3 33 33 H 1.08999 * 109.47114 * 239.99970 * 2 1 3 34 34 H 1.09003 * 109.46788 * 120.00340 * 2 1 3 35 35 H 1.09000 * 110.72398 * 336.75160 * 5 3 2 36 36 H 1.09007 * 110.71706 * 100.02968 * 5 3 2 37 37 H 1.09007 * 111.00593 * 153.58000 * 6 5 3 38 38 H 1.09007 * 111.00830 * 277.39394 * 6 5 3 39 39 H 1.08991 * 110.39683 * 204.36532 * 7 6 5 40 40 H 1.08994 * 110.23394 * 82.10484 * 7 6 5 41 41 H 0.96998 * 120.00397 * 0.02562 * 13 11 9 42 42 H 1.08999 * 109.20739 * 321.27133 * 16 14 13 43 43 H 1.08998 * 109.21051 * 80.58013 * 16 14 13 44 44 H 1.08994 * 110.25144 * 216.65605 * 17 16 14 45 45 H 1.09005 * 110.25072 * 338.70780 * 17 16 14 46 46 H 1.09002 * 108.51915 * 31.83484 * 18 17 16 47 47 H 1.09000 * 108.52434 * 149.50220 * 18 17 16 48 48 H 1.09002 * 109.84209 * 177.91477 * 19 18 17 49 49 H 1.08991 * 109.84627 * 298.89970 * 19 18 17 50 50 H 0.97002 * 120.00003 * 180.02562 * 24 23 21 51 51 H 1.08996 * 108.16588 * 329.85222 * 29 20 19 52 52 H 1.09002 * 108.15408 * 213.28418 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6134 1.9864 0.8428 5 6 1.6558 2.1350 -1.3245 6 6 2.9042 3.0011 -1.6386 7 6 4.0494 2.0993 -1.1208 8 7 3.5075 1.4539 0.0888 9 6 4.2365 0.9613 1.1098 10 8 3.6818 0.5383 2.1027 11 6 5.7281 0.9358 1.0190 12 8 6.2829 1.3591 0.0262 13 7 6.4570 0.4427 2.0397 14 6 7.9193 0.4233 1.9532 15 1 8.2178 0.2217 0.9244 16 6 8.4734 -0.6899 2.8759 17 6 9.9129 -0.4335 3.2161 18 6 9.8927 0.2362 4.5864 19 6 9.7963 1.6947 4.5414 20 7 8.5382 2.0423 3.7988 21 6 7.4664 2.5804 4.4596 22 1 6.4628 2.3772 4.1163 23 6 7.6698 3.3873 5.5707 24 7 8.8403 3.9569 5.7650 25 14 6.2822 3.6646 6.7902 26 1 6.4069 2.6976 7.9103 27 1 6.3590 5.0494 7.3209 28 1 4.9776 3.4672 6.1089 29 6 8.4777 1.8018 2.3860 30 1 -0.3634 -1.0229 0.0978 31 1 -0.3633 0.5962 0.8371 32 1 -0.3633 0.4269 -0.9349 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4897 1.3986 -2.1107 36 1 0.7748 2.7627 -1.1900 37 1 2.9977 3.1777 -2.7102 38 1 2.8742 3.9430 -1.0908 39 1 4.9232 2.7009 -0.8707 40 1 4.3058 1.3489 -1.8686 41 1 6.0136 0.1039 2.8331 42 1 7.8875 -0.7189 3.7945 43 1 8.3905 -1.6509 2.3681 44 1 10.4626 -1.3735 3.2637 45 1 10.3625 0.2309 2.4781 46 1 9.0420 -0.1499 5.1479 47 1 10.8065 -0.0322 5.1165 48 1 9.7503 2.0938 5.5546 49 1 10.6599 2.1067 4.0194 50 1 8.9825 4.5204 6.5416 51 1 9.4844 1.9031 1.9807 52 1 7.8566 2.5764 1.9360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034479038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:52 Heat of formation + Delta-G solvation = -65.778526 kcal Electronic energy + Delta-G solvation = -31337.639817 eV Core-core repulsion = 27336.855328 eV Total energy + Delta-G solvation = -4000.784489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95469 -40.46384 -39.24097 -38.68457 -36.00994 -35.04434 -34.44785 -32.84713 -32.60751 -31.75162 -28.87602 -28.11360 -26.94071 -25.50967 -24.92731 -23.94794 -23.00276 -21.97467 -21.37255 -20.94037 -20.36307 -18.71971 -18.53903 -18.19696 -17.31252 -16.96173 -16.92069 -16.57064 -15.95565 -15.89954 -15.64754 -15.45539 -15.13104 -14.77223 -14.64365 -14.37129 -14.30023 -13.99333 -13.87364 -13.47986 -13.44506 -13.34985 -13.06563 -13.01532 -12.78838 -12.76627 -12.64859 -12.59433 -12.35266 -12.15584 -12.02256 -11.97897 -11.68631 -11.60555 -11.51029 -11.46512 -11.27024 -11.07393 -10.58373 -10.52259 -10.18224 -9.84310 -8.58206 -7.88505 -5.35133 0.35493 1.28162 1.39993 1.43110 1.51142 2.14066 2.48068 2.50594 3.22089 3.31207 3.58488 3.59222 3.66774 3.84470 3.85753 4.08019 4.14641 4.19906 4.28798 4.32525 4.44570 4.45878 4.48339 4.55483 4.56837 4.71919 4.74839 4.85566 4.88667 4.91344 4.97680 5.00711 5.07617 5.11821 5.13769 5.15192 5.22758 5.23220 5.24544 5.32846 5.39525 5.41922 5.47608 5.55873 5.65119 5.72984 5.82014 6.05424 6.26303 6.44267 6.66731 6.97292 7.12825 7.86268 8.38587 9.15488 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.003593 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.212255 B = 7790.432465 C = 8812.463452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.124 3.876 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.096 3.904 8 N -0.588 5.588 9 C 0.515 3.485 10 O -0.549 6.549 11 C 0.503 3.497 12 O -0.540 6.540 13 N -0.675 5.675 14 C 0.124 3.876 15 H 0.093 0.907 16 C -0.104 4.104 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.152 3.848 20 N -0.590 5.590 21 C -0.247 4.247 22 H 0.051 0.949 23 C -0.039 4.039 24 N -0.922 5.922 25 Si 0.949 3.051 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.281 1.281 29 C 0.154 3.846 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.408 0.592 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.016 0.984 50 H 0.250 0.750 51 H 0.046 0.954 52 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 -8.981 -15.927 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.022 3.978 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.167 4.167 7 C -0.026 4.026 8 N -0.322 5.322 9 C 0.298 3.702 10 O -0.427 6.427 11 C 0.284 3.716 12 O -0.419 6.419 13 N -0.325 5.325 14 C 0.017 3.983 15 H 0.111 0.889 16 C -0.142 4.142 17 C -0.139 4.139 18 C -0.166 4.166 19 C 0.029 3.971 20 N -0.312 5.312 21 C -0.377 4.377 22 H 0.068 0.932 23 C -0.235 4.235 24 N -0.568 5.568 25 Si 0.778 3.222 26 H -0.209 1.209 27 H -0.220 1.220 28 H -0.206 1.206 29 C 0.024 3.976 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.244 0.756 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.034 0.966 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.668 -8.805 -15.907 21.080 hybrid contribution -0.595 0.474 1.649 1.816 sum -11.263 -8.330 -14.258 19.989 Atomic orbital electron populations 1.21680 0.92843 1.02443 1.02885 1.21836 0.98074 0.95183 1.01809 1.22062 0.77744 0.97680 1.00343 0.91717 1.22758 0.98746 0.99279 0.94316 1.22847 0.92853 0.97570 1.03435 1.22659 0.98074 0.96493 0.85354 1.48527 1.08184 1.56074 1.19370 1.19982 0.88093 0.79331 0.82824 1.90723 1.73096 1.48151 1.30733 1.20062 0.88036 0.79473 0.84062 1.90664 1.72980 1.46682 1.31525 1.45921 1.08007 1.59720 1.18806 1.22861 0.77189 0.97972 1.00283 0.88932 1.21635 0.97019 0.96601 0.98955 1.20932 0.95540 1.00919 0.96541 1.20922 1.00704 0.97112 0.97858 1.20247 0.85994 0.92837 0.98055 1.44072 1.13365 1.71021 1.02727 1.19167 0.86869 1.22249 1.09456 0.93154 1.25564 0.98412 0.96971 1.02603 1.70144 1.24580 1.32955 1.29090 0.85542 0.79896 0.76707 0.80057 1.20912 1.22032 1.20627 1.20697 0.97846 0.93558 0.85459 0.92017 0.92985 0.90245 0.91024 0.93972 0.88290 0.87747 0.86716 0.91000 0.90861 0.90076 0.75615 0.92383 0.90434 0.89192 0.91663 0.93643 0.92267 0.91694 0.96584 0.94086 0.93595 0.97361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.66 71.98 0.70 -1.33 16 2 C -0.13 -2.65 5.39 30.60 0.16 -2.48 16 3 C 0.12 2.67 2.89 45.34 0.13 2.80 16 4 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.11 -1.45 5.64 31.78 0.18 -1.27 16 6 C -0.13 -1.90 7.07 31.91 0.23 -1.67 16 7 C 0.10 2.20 5.87 86.78 0.51 2.70 16 8 N -0.59 -16.44 3.07 -790.05 -2.42 -18.86 16 9 C 0.51 18.10 7.64 87.27 0.67 18.77 16 10 O -0.55 -21.71 15.67 -3.24 -0.05 -21.76 16 11 C 0.50 18.41 7.67 87.27 0.67 19.08 16 12 O -0.54 -20.35 13.59 -3.24 -0.04 -20.40 16 13 N -0.67 -24.38 5.08 -437.81 -2.23 -26.61 16 14 C 0.12 4.27 2.91 46.27 0.13 4.40 16 15 H 0.09 3.02 7.58 -2.39 -0.02 3.00 16 16 C -0.10 -3.09 5.23 30.30 0.16 -2.93 16 17 C -0.10 -2.91 5.76 29.51 0.17 -2.74 16 18 C -0.13 -4.54 5.20 28.36 0.15 -4.39 16 19 C 0.15 6.97 5.37 83.58 0.45 7.42 16 20 N -0.59 -28.90 2.56 -707.83 -1.81 -30.71 16 21 C -0.25 -13.63 9.54 84.04 0.80 -12.83 16 22 H 0.05 2.87 7.91 -2.91 -0.02 2.84 16 23 C -0.04 -2.21 4.92 84.86 0.42 -1.80 16 24 N -0.92 -54.28 11.28 21.65 0.24 -54.04 16 25 Si 0.95 46.36 29.60 68.60 2.03 48.39 16 26 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 28 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 29 C 0.15 6.59 4.78 87.60 0.42 7.01 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 0.78 7.61 -2.38 -0.02 0.76 16 33 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.04 1.14 6.92 -2.39 -0.02 1.12 16 35 H 0.10 0.93 7.79 -2.39 -0.02 0.91 16 36 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 2.07 6.50 -2.39 -0.02 2.05 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.41 15.01 7.91 -92.71 -0.73 14.28 16 42 H 0.06 1.94 6.59 -2.39 -0.02 1.93 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.93 6.29 -2.38 -0.01 1.91 16 46 H 0.04 1.74 6.93 -2.39 -0.02 1.72 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.06 3.45 5.67 -2.39 -0.01 3.43 16 49 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 50 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 51 H 0.05 1.87 6.89 -2.39 -0.02 1.86 16 52 H 0.01 0.39 7.83 -2.39 -0.02 0.38 16 Total: -1.00 -69.12 396.03 1.84 -67.28 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.18 Total: 25.98 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 5.94 Total: 30.73 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -6.21 Total: -130.22 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.09 Total: -42.16 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -69.12 1.84 -67.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.503 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds