Wall clock time and date at job start Tue Mar 31 2020 20:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 H 1.08999 * 109.29545 * 305.41482 * 3 2 1 5 5 C 1.52905 * 109.30810 * 186.05274 * 3 2 1 6 6 C 1.53352 * 108.68224 * 188.95016 * 5 3 2 7 7 H 1.09005 * 109.70248 * 187.26642 * 6 5 3 8 8 C 1.50701 * 109.67427 * 307.78270 * 6 5 3 9 9 O 1.21275 * 119.99540 * 95.41321 * 8 6 5 10 10 N 1.34776 * 120.00103 * 275.41015 * 8 6 5 11 11 C 1.46492 * 119.99992 * 180.02562 * 10 8 6 12 12 H 1.08994 * 109.47265 * 35.00082 * 11 10 8 13 13 C 1.52999 * 109.47113 * 155.00309 * 11 10 8 14 14 C 1.53005 * 109.47363 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47060 * 299.99939 * 14 13 11 16 16 H 1.09004 * 109.47031 * 299.99728 * 15 14 13 17 17 N 1.46497 * 109.47359 * 179.97438 * 15 14 13 18 18 C 1.36933 * 120.00394 * 154.99973 * 17 15 14 19 19 H 1.08009 * 119.99903 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00384 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47099 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47154 * 119.99662 * 22 20 18 25 25 H 1.48501 * 109.46957 * 240.00195 * 22 20 18 26 26 C 1.53011 * 109.47256 * 59.99690 * 15 14 13 27 27 C 1.53000 * 109.46894 * 299.99901 * 26 15 14 28 28 C 1.53066 * 108.42280 * 67.52057 * 6 5 3 29 29 C 1.50173 * 109.88970 * 311.09385 * 28 6 5 30 30 O 1.21286 * 118.24597 * 197.56127 * 29 28 6 31 31 N 1.33354 * 123.50963 * 17.59052 * 29 28 6 32 32 H 1.08998 * 109.46957 * 60.00151 * 1 2 3 33 33 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46963 * 299.99955 * 1 2 3 35 35 H 1.09000 * 109.47571 * 239.99376 * 2 1 3 36 36 H 1.09003 * 109.47358 * 119.99604 * 2 1 3 37 37 H 1.08994 * 109.61307 * 69.18590 * 5 3 2 38 38 H 1.08996 * 109.58871 * 308.69979 * 5 3 2 39 39 H 0.97003 * 119.99689 * 0.02562 * 10 8 6 40 40 H 1.09004 * 109.47318 * 59.99708 * 13 11 10 41 41 H 1.09002 * 109.47063 * 299.99499 * 13 11 10 42 42 H 1.08998 * 109.47334 * 179.97438 * 14 13 11 43 43 H 1.09004 * 109.46977 * 59.99701 * 14 13 11 44 44 H 0.97000 * 119.99870 * 334.99838 * 17 15 14 45 45 H 0.97001 * 119.99932 * 180.02562 * 21 20 18 46 46 H 1.08994 * 109.46992 * 60.00012 * 26 15 14 47 47 H 1.09001 * 109.46901 * 179.97438 * 26 15 14 48 48 H 1.08994 * 109.47392 * 299.99866 * 27 26 15 49 49 H 1.09003 * 109.46618 * 179.97438 * 27 26 15 50 50 H 1.09000 * 109.40600 * 71.22845 * 28 6 5 51 51 H 1.09004 * 109.39889 * 190.97084 * 28 6 5 52 52 H 0.97006 * 117.94782 * 177.77672 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9808 -0.8384 5 6 3.5615 1.4408 -0.1522 6 6 4.0794 2.8664 0.0737 7 1 5.1439 2.9115 -0.1566 8 6 3.3275 3.8257 -0.8125 9 8 2.3670 4.4259 -0.3789 10 7 3.7225 4.0167 -2.0868 11 6 2.9919 4.9497 -2.9481 12 1 2.6366 5.7911 -2.3533 13 6 3.9217 5.4609 -4.0504 14 6 3.1585 6.4349 -4.9504 15 6 1.9648 5.7164 -5.5826 16 1 2.3205 4.8750 -6.1773 17 7 1.2337 6.6491 -6.4439 18 6 0.4788 6.1736 -7.4827 19 1 0.4221 5.1108 -7.6669 20 6 -0.2136 7.0573 -8.2991 21 7 -0.1440 8.3524 -8.0750 22 14 -1.2428 6.4087 -9.7167 23 1 -1.1540 4.9268 -9.7553 24 1 -2.6583 6.8155 -9.5273 25 1 -0.7335 6.9680 -10.9946 26 6 1.0350 5.2051 -4.4803 27 6 1.7982 4.2312 -3.5804 28 6 3.8537 3.2361 1.5418 29 6 2.4421 2.9123 1.9391 30 8 1.9965 3.4254 2.9437 31 7 1.6525 2.0905 1.2466 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.8284 1.1095 -1.1556 38 1 4.0018 0.7705 0.5860 39 1 4.4906 3.5364 -2.4336 40 1 4.2770 4.6195 -4.6453 41 1 4.7723 5.9725 -3.6000 42 1 3.8210 6.7994 -5.7355 43 1 2.8028 7.2764 -4.3558 44 1 1.2843 7.6035 -6.2783 45 1 -0.6281 8.9700 -8.6453 46 1 0.6793 6.0465 -3.8857 47 1 0.1843 4.6937 -4.9308 48 1 2.1539 3.3897 -4.1750 49 1 1.1359 3.8673 -2.7949 50 1 4.5446 2.6714 2.1678 51 1 4.0326 4.3026 1.6783 52 1 0.7647 1.9126 1.5946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034697316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:54 Heat of formation + Delta-G solvation = -119.424747 kcal Electronic energy + Delta-G solvation = -30563.651420 eV Core-core repulsion = 26560.540657 eV Total energy + Delta-G solvation = -4003.110764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06226 -40.50577 -39.22770 -37.91736 -36.35373 -34.92298 -34.51588 -33.01673 -32.33349 -31.67989 -30.00729 -29.06186 -26.41469 -25.44569 -24.25110 -23.61308 -22.72138 -22.31975 -21.63490 -21.05231 -19.96479 -19.05245 -18.32302 -17.59769 -17.45700 -17.10277 -16.76670 -16.40776 -16.17278 -15.73564 -15.39503 -15.26352 -15.10530 -14.94513 -14.78116 -14.71525 -14.39964 -14.13646 -13.97432 -13.54565 -13.44817 -13.16211 -13.08490 -12.93439 -12.89897 -12.82675 -12.42204 -12.34507 -12.27981 -12.11379 -12.09629 -12.02123 -11.85872 -11.73491 -11.65383 -11.45582 -11.18966 -10.88080 -10.78916 -10.63407 -10.02381 -9.96586 -8.99771 -7.93887 -5.22044 1.46285 1.47331 1.56985 1.66407 1.74439 2.18491 2.41470 2.56363 3.39357 3.52528 3.57308 3.60317 3.77447 3.78637 3.84015 3.91257 4.04344 4.18849 4.22850 4.30910 4.38825 4.41298 4.44514 4.53110 4.56805 4.60944 4.62351 4.66381 4.76268 4.80396 4.86580 4.87871 4.93882 5.02262 5.09134 5.10519 5.13907 5.17613 5.24964 5.26522 5.28818 5.38122 5.49019 5.55663 5.59374 5.65044 5.83404 6.29066 6.45365 6.67785 7.26651 7.34152 7.38596 8.12329 8.33949 9.30189 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.002475 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.155136 B =11312.095560 C =12119.500386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C 0.129 3.871 4 H 0.052 0.948 5 C -0.116 4.116 6 C -0.102 4.102 7 H 0.155 0.845 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.704 5.704 11 C 0.153 3.847 12 H 0.054 0.946 13 C -0.104 4.104 14 C -0.115 4.115 15 C 0.174 3.826 16 H 0.051 0.949 17 N -0.741 5.741 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.293 1.293 26 C -0.124 4.124 27 C -0.107 4.107 28 C -0.116 4.116 29 C 0.524 3.476 30 O -0.624 6.624 31 N -0.704 5.704 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.420 0.580 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.030 0.970 47 H 0.038 0.962 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.142 0.858 51 H 0.087 0.913 52 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.495 -22.027 16.617 32.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.163 4.163 3 C 0.025 3.975 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.123 4.123 7 H 0.173 0.827 8 C 0.293 3.707 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.072 0.928 13 C -0.142 4.142 14 C -0.154 4.154 15 C 0.066 3.934 16 H 0.069 0.931 17 N -0.380 5.380 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.220 1.220 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.156 4.156 29 C 0.313 3.687 30 O -0.508 6.508 31 N -0.353 5.353 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.258 0.742 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.100 0.900 49 H 0.062 0.938 50 H 0.160 0.840 51 H 0.105 0.895 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 15.771 -21.450 17.173 31.682 hybrid contribution -1.717 0.788 -0.809 2.055 sum 14.054 -20.662 16.364 29.870 Atomic orbital electron populations 1.21838 0.96474 1.02478 1.01114 1.21877 0.95712 0.94061 1.04641 1.21242 0.97237 0.94012 0.85052 0.92985 1.22042 0.92176 0.94108 1.06995 1.21569 1.03818 0.94734 0.92226 0.82691 1.21238 0.84221 0.82528 0.82750 1.90789 1.29949 1.50358 1.74976 1.45893 1.33662 1.44956 1.11080 1.20753 0.92077 0.91468 0.90900 0.92778 1.21639 0.97350 0.99796 0.95395 1.21655 0.96709 0.98316 0.98733 1.20493 0.90755 0.92308 0.89874 0.93052 1.42718 1.56575 1.05376 1.33334 1.19672 1.19876 0.92442 1.04537 0.90512 1.25565 1.03196 0.95633 1.02868 1.69831 1.48353 1.01902 1.42296 0.85110 0.77782 0.78061 0.79080 1.18759 1.22542 1.21999 1.22040 0.99045 0.98029 0.97404 1.21716 0.96685 0.98411 0.97803 1.21558 0.92505 1.04545 0.96954 1.20581 0.89665 0.76611 0.81816 1.90706 1.76380 1.53836 1.29907 1.45589 1.17880 1.46780 1.25097 0.93451 0.91094 0.93791 0.88108 0.90095 0.85995 0.86814 0.74217 0.88871 0.89389 0.91474 0.93504 0.79880 0.94189 0.95061 0.94266 0.89973 0.93789 0.84037 0.89484 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.76 71.98 0.70 -1.21 16 2 C -0.13 -1.02 5.57 30.59 0.17 -0.85 16 3 C 0.13 1.61 2.37 45.10 0.11 1.72 16 4 H 0.05 0.94 7.25 -2.39 -0.02 0.92 16 5 C -0.12 -0.54 4.93 30.68 0.15 -0.39 16 6 C -0.10 -0.87 3.07 -11.40 -0.03 -0.90 16 7 H 0.16 -0.06 8.14 -2.38 -0.02 -0.08 16 8 C 0.51 9.16 5.60 87.66 0.49 9.65 16 9 O -0.58 -17.76 14.25 -3.01 -0.04 -17.80 16 10 N -0.70 -9.97 5.08 -442.55 -2.25 -12.21 16 11 C 0.15 3.42 2.46 44.99 0.11 3.53 16 12 H 0.05 1.61 7.58 -2.39 -0.02 1.60 16 13 C -0.10 -2.02 5.39 30.60 0.16 -1.85 16 14 C -0.12 -3.45 5.39 30.59 0.16 -3.29 16 15 C 0.17 6.56 2.77 44.99 0.12 6.68 16 16 H 0.05 1.89 8.08 -2.38 -0.02 1.88 16 17 N -0.74 -37.44 5.12 -322.93 -1.65 -39.09 16 18 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 21 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 22 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 C -0.12 -4.50 5.50 30.60 0.17 -4.33 16 27 C -0.11 -2.83 5.49 30.60 0.17 -2.66 16 28 C -0.12 -1.71 5.21 29.71 0.15 -1.55 16 29 C 0.52 12.84 6.38 87.71 0.56 13.40 16 30 O -0.62 -22.04 17.78 -3.05 -0.05 -22.10 16 31 N -0.70 -13.87 4.92 -446.68 -2.20 -16.07 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.60 6.67 -2.39 -0.02 0.58 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.11 0.07 8.11 -2.39 -0.02 0.05 16 39 H 0.42 2.30 8.60 -92.71 -0.80 1.51 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.37 20.36 7.80 -92.71 -0.72 19.63 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 1.63 8.10 -2.38 -0.02 1.61 16 52 H 0.39 8.26 7.04 -92.70 -0.65 7.61 16 Total: -1.00 -85.77 403.90 -0.62 -86.39 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -1.25 Total: 31.02 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.50 Total: 1.62 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.81 Total: -127.57 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.10 Total: -39.90 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -85.77 -0.62 -86.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.033 kcal (2) G-P(sol) polarization free energy of solvation -85.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds