Wall clock time and date at job start Tue Mar 31 2020 20:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46943 * 2 1 4 4 H 1.08994 * 109.29742 * 305.41337 * 3 2 1 5 5 C 1.52908 * 109.30645 * 186.04617 * 3 2 1 6 6 C 1.53346 * 108.68420 * 188.95316 * 5 3 2 7 7 H 1.08995 * 109.70317 * 307.77023 * 6 5 3 8 8 C 1.50697 * 109.67096 * 187.25411 * 6 5 3 9 9 O 1.21274 * 120.00450 * 1.03391 * 8 6 5 10 10 N 1.34782 * 119.99489 * 181.03996 * 8 6 5 11 11 C 1.46500 * 119.99474 * 179.97438 * 10 8 6 12 12 H 1.08996 * 109.47738 * 34.99759 * 11 10 8 13 13 C 1.53002 * 109.47089 * 154.99416 * 11 10 8 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 11 16 16 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 17 17 N 1.46492 * 109.47363 * 179.97438 * 15 14 13 18 18 C 1.36932 * 120.00155 * 155.00084 * 17 15 14 19 19 H 1.07999 * 119.99968 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00306 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00154 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46735 * 120.00085 * 22 20 18 25 25 H 1.48498 * 109.47014 * 239.99954 * 22 20 18 26 26 C 1.52999 * 109.46626 * 59.99702 * 15 14 13 27 27 C 1.52996 * 109.47249 * 274.99290 * 11 10 8 28 28 C 1.53070 * 108.42149 * 67.52043 * 6 5 3 29 29 C 1.50173 * 109.89566 * 311.09814 * 28 6 5 30 30 O 1.21282 * 118.24787 * 197.56375 * 29 28 6 31 31 N 1.33359 * 123.50824 * 17.58011 * 29 28 6 32 32 H 1.08988 * 109.47764 * 299.99887 * 1 2 3 33 33 H 1.09006 * 109.47043 * 60.00151 * 1 2 3 34 34 H 1.09009 * 109.47106 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47097 * 240.00068 * 2 1 3 36 36 H 1.08996 * 109.46931 * 119.99920 * 2 1 3 37 37 H 1.08998 * 109.60832 * 69.19115 * 5 3 2 38 38 H 1.08998 * 109.58933 * 308.70783 * 5 3 2 39 39 H 0.96992 * 120.00293 * 359.97438 * 10 8 6 40 40 H 1.09000 * 109.46986 * 59.99786 * 13 11 10 41 41 H 1.09001 * 109.47601 * 300.00509 * 13 11 10 42 42 H 1.09001 * 109.46922 * 180.02562 * 14 13 11 43 43 H 1.09000 * 109.47140 * 59.99976 * 14 13 11 44 44 H 0.97006 * 119.99963 * 335.00232 * 17 15 14 45 45 H 0.96993 * 120.00025 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47160 * 60.00369 * 26 15 14 47 47 H 1.09002 * 109.46719 * 180.02562 * 26 15 14 48 48 H 1.09000 * 109.47054 * 300.00354 * 27 11 10 49 49 H 1.09001 * 109.46997 * 60.00087 * 27 11 10 50 50 H 1.09000 * 109.40118 * 71.22814 * 28 6 5 51 51 H 1.09008 * 109.40045 * 190.97146 * 28 6 5 52 52 H 0.96997 * 117.95009 * 177.77702 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9808 -0.8384 5 6 3.5615 1.4408 -0.1520 6 6 4.0793 2.8664 0.0740 7 1 3.5360 3.5607 -0.5670 8 6 5.5510 2.9279 -0.2442 9 8 6.1293 1.9356 -0.6338 10 7 6.2247 4.0858 -0.0956 11 6 7.6556 4.1454 -0.4044 12 1 7.8730 3.4900 -1.2477 13 6 8.0405 5.5822 -0.7629 14 6 9.5349 5.6447 -1.0847 15 6 10.3388 5.1906 0.1354 16 1 10.1210 5.8463 0.9785 17 7 11.7697 5.2499 -0.1729 18 6 12.6823 5.3967 0.8374 19 1 12.3472 5.4693 1.8615 20 6 14.0382 5.4534 0.5452 21 7 14.4466 5.3665 -0.7031 22 14 15.2831 5.6544 1.9233 23 1 14.5726 5.7280 3.2252 24 1 16.2070 4.4918 1.9292 25 1 16.0592 6.9025 1.7111 26 6 9.9539 3.7539 0.4938 27 6 8.4599 3.6912 0.8153 28 6 3.8535 3.2361 1.5421 29 6 2.4419 2.9122 1.9393 30 8 1.9962 3.4253 2.9439 31 7 1.6523 2.0905 1.2467 32 1 -0.3634 0.5137 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.8285 1.1096 -1.1555 38 1 4.0018 0.7705 0.5862 39 1 5.7622 4.8795 0.2157 40 1 7.8231 6.2377 0.0804 41 1 7.4675 5.9060 -1.6317 42 1 9.8092 6.6684 -1.3396 43 1 9.7527 4.9891 -1.9278 44 1 12.0708 5.1851 -1.0928 45 1 15.3940 5.4057 -0.9073 46 1 10.1717 3.0983 -0.3493 47 1 10.5262 3.4306 1.3633 48 1 8.2425 4.3467 1.6585 49 1 8.1857 2.6676 1.0706 50 1 4.5444 2.6713 2.1680 51 1 4.0324 4.3027 1.6786 52 1 0.7645 1.9125 1.5947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034697317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:57 Heat of formation + Delta-G solvation = -121.062504 kcal Electronic energy + Delta-G solvation = -29597.581807 eV Core-core repulsion = 25594.400025 eV Total energy + Delta-G solvation = -4003.181782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87011 -40.73343 -39.31609 -38.03743 -36.35218 -35.10663 -34.43871 -33.04081 -32.33773 -31.67130 -30.03221 -28.98035 -26.57435 -25.52384 -24.22647 -23.58049 -22.76144 -22.24074 -21.33499 -20.74423 -20.24747 -19.11951 -18.45518 -17.90286 -17.47023 -17.15583 -16.82328 -16.39699 -16.03090 -15.77885 -15.43438 -15.39006 -15.09829 -14.97735 -14.82107 -14.73219 -14.37331 -14.28145 -13.99609 -13.76488 -13.42436 -13.14626 -13.06867 -12.97504 -12.85090 -12.43890 -12.35077 -12.32318 -12.28014 -12.09966 -12.07504 -12.00693 -11.85160 -11.75713 -11.65682 -11.43888 -11.30368 -11.17451 -10.85261 -10.55387 -10.10023 -9.99097 -8.98514 -7.93513 -5.21217 1.46656 1.47319 1.55478 1.57105 1.63151 2.14831 2.27423 2.56616 3.38165 3.39599 3.53331 3.60934 3.72190 3.78836 3.86379 3.92602 4.04386 4.11982 4.19900 4.31549 4.33046 4.39761 4.42788 4.50053 4.56090 4.58040 4.62316 4.66660 4.68414 4.77054 4.86559 4.90014 4.97989 5.02616 5.14679 5.16371 5.17577 5.18959 5.27554 5.28055 5.30194 5.42908 5.49436 5.56992 5.57523 5.66193 5.80525 6.29759 6.31446 6.61099 7.16521 7.30234 7.35074 8.13324 8.35190 9.30352 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.001913 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.163943 B =14634.813151 C =14887.821714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.144 3.856 4 H 0.101 0.899 5 C -0.113 4.113 6 C -0.098 4.098 7 H 0.135 0.865 8 C 0.518 3.482 9 O -0.576 6.576 10 N -0.710 5.710 11 C 0.153 3.847 12 H 0.066 0.934 13 C -0.106 4.106 14 C -0.114 4.114 15 C 0.171 3.829 16 H 0.046 0.954 17 N -0.739 5.739 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.293 1.293 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.123 4.123 29 C 0.524 3.476 30 O -0.604 6.604 31 N -0.705 5.705 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.100 0.900 51 H 0.123 0.877 52 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.805 -6.133 -1.538 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.040 3.960 4 H 0.119 0.881 5 C -0.151 4.151 6 C -0.120 4.120 7 H 0.153 0.847 8 C 0.305 3.695 9 O -0.456 6.456 10 N -0.361 5.361 11 C 0.048 3.952 12 H 0.085 0.915 13 C -0.144 4.144 14 C -0.153 4.153 15 C 0.063 3.937 16 H 0.064 0.936 17 N -0.378 5.378 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.799 3.201 23 H -0.191 1.191 24 H -0.224 1.224 25 H -0.220 1.220 26 C -0.164 4.164 27 C -0.151 4.151 28 C -0.163 4.163 29 C 0.312 3.688 30 O -0.486 6.486 31 N -0.357 5.357 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.067 0.933 50 H 0.118 0.882 51 H 0.142 0.858 52 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -32.339 -6.493 -1.227 33.008 hybrid contribution 1.099 -0.039 0.608 1.256 sum -31.241 -6.533 -0.619 31.922 Atomic orbital electron populations 1.21814 0.94680 1.02597 1.02223 1.21903 0.96956 0.94673 1.03713 1.21200 0.94447 0.94453 0.85937 0.88109 1.21779 0.93735 0.94781 1.04780 1.21430 0.91940 1.00994 0.97595 0.84713 1.20862 0.89579 0.82652 0.76388 1.90733 1.71003 1.36242 1.47580 1.45987 1.09575 1.12905 1.67623 1.20811 0.79671 0.97863 0.96839 0.91543 1.21652 0.94768 0.94636 1.03355 1.21641 0.94869 1.01351 0.97390 1.20506 0.82912 0.93795 0.96459 0.93573 1.42680 1.01478 1.87530 1.06161 1.19661 0.87924 1.39563 0.89495 0.90742 1.25535 0.98988 1.04188 0.98399 1.69823 1.14228 1.59722 1.18412 0.85122 0.79188 0.76619 0.79169 1.19065 1.22392 1.21996 1.22014 0.95149 0.99274 0.99953 1.21752 0.93962 1.00892 0.98536 1.21635 0.93016 1.05899 0.95705 1.20242 0.88440 0.77756 0.82375 1.90775 1.75473 1.53974 1.28396 1.45736 1.18318 1.46223 1.25389 0.92901 0.91455 0.91978 0.89125 0.91961 0.88480 0.91559 0.74647 0.89546 0.89156 0.91601 0.92848 0.79722 0.94165 0.94250 0.94330 0.90718 0.93280 0.88173 0.85844 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.76 71.98 0.70 0.02 16 2 C -0.13 -0.77 5.57 30.60 0.17 -0.59 16 3 C 0.14 0.95 3.07 45.10 0.14 1.08 16 4 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 5 C -0.11 -1.16 3.99 30.68 0.12 -1.04 16 6 C -0.10 -1.01 2.60 -11.40 -0.03 -1.04 16 7 H 0.14 0.67 8.13 -2.39 -0.02 0.65 16 8 C 0.52 9.23 7.10 87.66 0.62 9.86 16 9 O -0.58 -15.82 15.56 -3.01 -0.05 -15.86 16 10 N -0.71 -10.96 4.98 -442.54 -2.21 -13.16 16 11 C 0.15 3.42 2.46 44.99 0.11 3.53 16 12 H 0.07 1.83 7.58 -2.39 -0.02 1.82 16 13 C -0.11 -2.12 5.39 30.59 0.16 -1.96 16 14 C -0.11 -3.39 5.39 30.60 0.16 -3.22 16 15 C 0.17 6.53 2.77 44.99 0.12 6.65 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.74 -37.29 5.12 -322.95 -1.65 -38.95 16 18 C -0.23 -13.08 9.93 84.04 0.83 -12.24 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 22 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 C -0.12 -4.43 5.50 30.58 0.17 -4.27 16 27 C -0.11 -3.04 5.49 30.58 0.17 -2.88 16 28 C -0.12 -1.44 5.18 29.71 0.15 -1.29 16 29 C 0.52 8.45 7.71 87.71 0.68 9.12 16 30 O -0.60 -15.45 17.78 -3.04 -0.05 -15.50 16 31 N -0.70 -7.44 5.12 -446.66 -2.29 -9.73 16 32 H 0.05 0.25 6.67 -2.39 -0.02 0.23 16 33 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.10 1.06 7.89 -2.39 -0.02 1.04 16 38 H 0.07 0.91 8.11 -2.39 -0.02 0.90 16 39 H 0.42 3.60 8.29 -92.71 -0.77 2.83 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.37 20.21 7.80 -92.70 -0.72 19.49 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 51 H 0.12 1.07 7.92 -2.38 -0.02 1.05 16 52 H 0.40 3.97 7.04 -92.71 -0.65 3.32 16 Total: -1.00 -77.60 407.50 -0.40 -78.00 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -1.22 Total: 28.65 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.76 Total: -2.39 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -5.86 Total: -121.63 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.10 Total: -31.37 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.60 -0.40 -78.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.062 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds