Wall clock time and date at job start Tue Mar 31 2020 20:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47064 * 2 1 4 4 H 1.08998 * 109.12893 * 55.51670 * 3 2 1 5 5 C 1.52916 * 109.29910 * 175.00079 * 3 2 1 6 6 C 1.53353 * 108.67254 * 171.06398 * 5 3 2 7 7 H 1.09000 * 109.67504 * 172.73444 * 6 5 3 8 8 C 1.50698 * 109.67154 * 52.20419 * 6 5 3 9 9 O 1.21283 * 119.99879 * 263.60785 * 8 6 5 10 10 N 1.34773 * 120.00325 * 83.60864 * 8 6 5 11 11 C 1.46502 * 120.00181 * 180.02562 * 10 8 6 12 12 H 1.09004 * 109.46763 * 324.99529 * 11 10 8 13 13 C 1.52993 * 109.47241 * 84.99804 * 11 10 8 14 14 C 1.52998 * 109.47465 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46889 * 300.00174 * 14 13 11 16 16 H 1.09004 * 109.47119 * 299.99802 * 15 14 13 17 17 N 1.46494 * 109.47211 * 179.97438 * 15 14 13 18 18 C 1.36942 * 120.00259 * 84.99933 * 17 15 14 19 19 H 1.08004 * 119.99404 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00459 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00225 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46776 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47110 * 120.00027 * 22 20 18 25 25 H 1.48505 * 109.46841 * 239.99882 * 22 20 18 26 26 C 1.53002 * 109.47171 * 59.99475 * 15 14 13 27 27 C 1.52997 * 109.47120 * 299.99995 * 26 15 14 28 28 C 1.53072 * 108.42302 * 292.47016 * 6 5 3 29 29 C 1.50172 * 109.89107 * 48.90039 * 28 6 5 30 30 O 1.21292 * 118.24201 * 162.43891 * 29 28 6 31 31 N 1.33349 * 123.51444 * 342.41578 * 29 28 6 32 32 H 1.08996 * 109.46920 * 299.99579 * 1 2 3 33 33 H 1.08996 * 109.47256 * 59.99997 * 1 2 3 34 34 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46839 * 239.99921 * 2 1 3 36 36 H 1.08996 * 109.47256 * 120.00003 * 2 1 3 37 37 H 1.08999 * 109.60181 * 51.31475 * 5 3 2 38 38 H 1.08996 * 109.60364 * 290.82132 * 5 3 2 39 39 H 0.97005 * 119.99536 * 359.97438 * 10 8 6 40 40 H 1.09000 * 109.47319 * 299.99907 * 13 11 10 41 41 H 1.08998 * 109.47591 * 59.99721 * 13 11 10 42 42 H 1.09000 * 109.47570 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.46972 * 59.99307 * 14 13 11 44 44 H 0.97002 * 120.00133 * 264.99832 * 17 15 14 45 45 H 0.96996 * 120.00228 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.46676 * 179.97438 * 26 15 14 47 47 H 1.08999 * 109.46957 * 60.00586 * 26 15 14 48 48 H 1.09004 * 109.47395 * 299.99811 * 27 26 15 49 49 H 1.09000 * 109.47048 * 179.97438 * 27 26 15 50 50 H 1.09004 * 109.39663 * 169.02564 * 28 6 5 51 51 H 1.09000 * 109.40040 * 288.85286 * 28 6 5 52 52 H 0.96992 * 117.95451 * 182.22688 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6094 1.9736 0.8488 5 6 3.5640 1.4398 0.1258 6 6 4.0779 2.8669 -0.1000 7 1 5.1461 2.9102 0.1122 8 6 3.3412 3.8205 0.8050 9 8 2.3840 4.4366 0.3865 10 7 3.7459 3.9886 2.0795 11 6 3.0294 4.9152 2.9595 12 1 2.6782 5.7687 2.3795 13 6 1.8329 4.1988 3.5885 14 6 1.0841 5.1666 4.5070 15 6 2.0253 5.6532 5.6109 16 1 2.3766 4.8000 6.1911 17 7 1.3086 6.5804 6.4900 18 6 0.5553 6.0972 7.5266 19 1 0.4893 5.0325 7.6956 20 6 -0.1242 6.9756 8.3593 21 7 -0.0441 8.2731 8.1530 22 14 -1.1523 6.3164 9.7728 23 1 -1.0787 4.8334 9.7887 24 1 -0.6311 6.8522 11.0559 25 1 -2.5648 6.7396 9.5969 26 6 3.2219 6.3696 4.9818 27 6 3.9705 5.4017 4.0633 28 6 3.8269 3.2459 -1.5617 29 6 2.4088 2.9243 -1.9367 30 8 1.9460 3.4436 -2.9303 31 7 1.6312 2.0980 -1.2361 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.9916 0.7743 -0.6242 38 1 3.8481 1.1022 1.1224 39 1 4.5113 3.4956 2.4143 40 1 1.1622 3.8526 2.8022 41 1 2.1840 3.3453 4.1684 42 1 0.2319 4.6561 4.9556 43 1 0.7329 6.0199 3.9268 44 1 1.3676 7.5366 6.3380 45 1 -0.5192 8.8869 8.7346 46 1 3.8921 6.7167 5.7683 47 1 2.8706 7.2229 4.4016 48 1 4.3219 4.5485 4.6435 49 1 4.8228 5.9122 3.6148 50 1 4.0034 4.3133 -1.6944 51 1 4.5061 2.6841 -2.2031 52 1 0.7377 1.9221 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034697319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:03 Heat of formation + Delta-G solvation = -119.417349 kcal Electronic energy + Delta-G solvation = -30569.948750 eV Core-core repulsion = 26566.838308 eV Total energy + Delta-G solvation = -4003.110443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06154 -40.50602 -39.22749 -37.92024 -36.35381 -34.92494 -34.51693 -33.01209 -32.33352 -31.68051 -30.00706 -29.06138 -26.41896 -25.44692 -24.25123 -23.61274 -22.72518 -22.31765 -21.63267 -21.05147 -19.96239 -19.05222 -18.32686 -17.60006 -17.45764 -17.09978 -16.76604 -16.41319 -16.17029 -15.73547 -15.39501 -15.27279 -15.10554 -14.94732 -14.78376 -14.71461 -14.38970 -14.13772 -13.97508 -13.54758 -13.44759 -13.16253 -13.08474 -12.93231 -12.89895 -12.82703 -12.42154 -12.34581 -12.27972 -12.11187 -12.09657 -12.02169 -11.85470 -11.73881 -11.65433 -11.45497 -11.18925 -10.88097 -10.79038 -10.63673 -10.02702 -9.96583 -8.99742 -7.93868 -5.22083 1.46219 1.47362 1.56998 1.66583 1.74187 2.18456 2.41282 2.56345 3.39366 3.52533 3.57287 3.60076 3.77409 3.78578 3.84043 3.91256 4.04320 4.18665 4.22779 4.30912 4.38869 4.41300 4.44510 4.52961 4.56749 4.60907 4.62471 4.66399 4.76368 4.80414 4.86580 4.87874 4.93783 5.02302 5.09121 5.10505 5.13928 5.17627 5.24990 5.26556 5.28768 5.37935 5.49040 5.55714 5.59372 5.65026 5.83315 6.29104 6.45128 6.67765 7.26506 7.34171 7.38623 8.12338 8.33916 9.30202 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.002479 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.204775 B =11293.875182 C =12099.911077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C 0.129 3.871 4 H 0.052 0.948 5 C -0.115 4.115 6 C -0.102 4.102 7 H 0.156 0.844 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.704 5.704 11 C 0.153 3.847 12 H 0.054 0.946 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.174 3.826 16 H 0.051 0.949 17 N -0.741 5.741 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.298 1.298 26 C -0.115 4.115 27 C -0.103 4.103 28 C -0.116 4.116 29 C 0.524 3.476 30 O -0.624 6.624 31 N -0.704 5.704 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.420 0.580 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.031 0.969 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.142 0.858 52 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.288 -21.922 -16.977 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.163 4.163 3 C 0.024 3.976 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.124 4.124 7 H 0.173 0.827 8 C 0.293 3.707 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.072 0.928 13 C -0.146 4.146 14 C -0.165 4.165 15 C 0.066 3.934 16 H 0.070 0.930 17 N -0.380 5.380 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.226 1.226 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.156 4.156 29 C 0.313 3.687 30 O -0.508 6.508 31 N -0.354 5.354 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.258 0.742 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.160 0.840 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 15.558 -21.332 -17.524 31.689 hybrid contribution -1.716 0.782 0.832 2.061 sum 13.842 -20.550 -16.691 29.875 Atomic orbital electron populations 1.21839 0.96488 1.02490 1.01105 1.21881 0.95707 0.94073 1.04646 1.21250 0.97068 0.93937 0.85309 0.92970 1.22045 0.92102 0.94077 1.07076 1.21571 1.03952 0.94772 0.92058 0.82670 1.21238 0.84049 0.82562 0.82878 1.90792 1.29997 1.49530 1.75791 1.45890 1.34077 1.44904 1.10711 1.20753 0.92214 0.91635 0.90598 0.92784 1.21713 0.96718 0.98489 0.97696 1.22039 0.99089 0.98056 0.97337 1.20494 0.90846 0.92447 0.89645 0.93049 1.42721 1.57177 1.05248 1.32862 1.19671 1.20202 0.92338 1.04316 0.90511 1.25563 1.03224 0.95637 1.02829 1.69829 1.48713 1.01947 1.41894 0.85111 0.77772 0.78071 0.79085 1.18759 1.21984 1.22557 1.21656 0.96743 0.98338 0.98679 1.21637 0.97337 0.99959 0.95237 1.21560 0.92318 1.04513 0.97159 1.20588 0.89865 0.76653 0.81582 1.90707 1.75854 1.53690 1.30572 1.45600 1.17558 1.46446 1.25790 0.93464 0.93772 0.91085 0.90077 0.88123 0.86804 0.85961 0.74213 0.93808 0.89967 0.94267 0.95059 0.79878 0.94188 0.91472 0.93505 0.88861 0.89389 0.89485 0.84047 0.77405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.75 71.98 0.70 -1.21 16 2 C -0.13 -1.02 5.58 30.60 0.17 -0.85 16 3 C 0.13 1.60 2.38 45.10 0.11 1.71 16 4 H 0.05 0.93 7.28 -2.39 -0.02 0.92 16 5 C -0.12 -0.54 4.93 30.68 0.15 -0.39 16 6 C -0.10 -0.87 3.07 -11.40 -0.03 -0.90 16 7 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 8 C 0.51 9.17 5.58 87.66 0.49 9.66 16 9 O -0.58 -17.80 14.32 -3.04 -0.04 -17.85 16 10 N -0.70 -9.95 5.08 -442.54 -2.25 -12.20 16 11 C 0.15 3.42 2.45 44.99 0.11 3.53 16 12 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 13 C -0.11 -2.83 5.49 30.59 0.17 -2.66 16 14 C -0.12 -4.50 5.50 30.59 0.17 -4.33 16 15 C 0.17 6.55 2.77 44.99 0.12 6.68 16 16 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 17 N -0.74 -37.43 5.12 -322.94 -1.65 -39.09 16 18 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 21 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 22 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 C -0.12 -3.45 5.39 30.59 0.16 -3.29 16 27 C -0.10 -2.01 5.39 30.59 0.16 -1.85 16 28 C -0.12 -1.71 5.20 29.71 0.15 -1.56 16 29 C 0.52 12.84 6.39 87.71 0.56 13.40 16 30 O -0.62 -22.06 17.78 -3.07 -0.05 -22.12 16 31 N -0.70 -13.87 4.93 -446.63 -2.20 -16.08 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.60 6.63 -2.39 -0.02 0.58 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.11 0.07 8.11 -2.39 -0.02 0.05 16 38 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.42 2.29 8.60 -92.70 -0.80 1.49 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.37 20.36 7.80 -92.71 -0.72 19.63 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 51 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.39 8.26 6.98 -92.71 -0.65 7.62 16 Total: -1.00 -85.84 403.90 -0.63 -86.47 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -1.24 Total: 30.98 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.50 Total: 1.64 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.82 Total: -127.56 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.10 Total: -39.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -85.84 -0.63 -86.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.944 kcal (2) G-P(sol) polarization free energy of solvation -85.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds