Wall clock time and date at job start Tue Mar 31 2020 20:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 H 1.09001 * 109.87368 * 306.50483 * 3 2 1 5 5 C 1.54320 * 109.88204 * 67.67429 * 3 2 1 6 6 C 1.55161 * 102.94439 * 141.60985 * 5 3 2 7 7 C 1.55131 * 101.48526 * 324.33643 * 6 5 3 8 8 N 1.47023 * 109.88633 * 185.48347 * 3 2 1 9 9 C 1.34778 * 125.64672 * 61.60587 * 8 3 2 10 10 O 1.21347 * 119.99686 * 355.38996 * 9 8 3 11 11 C 1.49446 * 119.99830 * 175.39098 * 9 8 3 12 12 O 1.21351 * 120.00134 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99830 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99884 * 179.97438 * 13 11 9 15 15 H 1.08992 * 109.47553 * 35.00069 * 14 13 11 16 16 C 1.53000 * 109.47022 * 155.00358 * 14 13 11 17 17 C 1.53001 * 109.47191 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46753 * 299.99684 * 17 16 14 19 19 H 1.09003 * 109.47223 * 299.99527 * 18 17 16 20 20 N 1.46507 * 109.47161 * 179.97438 * 18 17 16 21 21 C 1.36935 * 120.00061 * 154.99448 * 20 18 17 22 22 H 1.07998 * 119.99829 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99623 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00498 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99792 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46737 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47274 * 119.99690 * 25 23 21 28 28 H 1.48500 * 109.46782 * 240.00275 * 25 23 21 29 29 C 1.52997 * 109.47510 * 60.00047 * 18 17 16 30 30 C 1.52993 * 109.46922 * 300.00170 * 29 18 17 31 31 H 1.09003 * 109.46977 * 184.95573 * 1 2 3 32 32 H 1.08992 * 109.46896 * 304.95775 * 1 2 3 33 33 H 1.09002 * 109.46809 * 64.96035 * 1 2 3 34 34 H 1.09002 * 109.47195 * 240.00229 * 2 1 3 35 35 H 1.09000 * 109.47213 * 120.00260 * 2 1 3 36 36 H 1.08997 * 110.72165 * 259.97392 * 5 3 2 37 37 H 1.09004 * 110.72307 * 23.25039 * 5 3 2 38 38 H 1.08999 * 111.00302 * 82.57366 * 6 5 3 39 39 H 1.08997 * 111.00626 * 206.38735 * 6 5 3 40 40 H 1.09002 * 110.49353 * 278.45403 * 7 6 5 41 41 H 1.08995 * 110.34343 * 156.05574 * 7 6 5 42 42 H 0.97001 * 120.00219 * 0.02562 * 13 11 9 43 43 H 1.08993 * 109.47718 * 59.99500 * 16 14 13 44 44 H 1.09002 * 109.46916 * 299.99226 * 16 14 13 45 45 H 1.09003 * 109.47319 * 59.99140 * 17 16 14 46 46 H 1.09003 * 109.47342 * 179.97438 * 17 16 14 47 47 H 0.96998 * 119.99395 * 335.00448 * 20 18 17 48 48 H 0.96998 * 120.00397 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.47176 * 179.97438 * 29 18 17 50 50 H 1.09003 * 109.46776 * 59.99538 * 29 18 17 51 51 H 1.09002 * 109.47329 * 299.99594 * 30 29 18 52 52 H 1.09003 * 109.47190 * 179.97438 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9951 -0.8240 5 6 1.6952 2.1210 1.3424 6 6 2.9525 2.9841 1.6286 7 6 4.0823 2.0780 1.0726 8 7 3.5043 1.4552 -0.1321 9 6 4.2027 0.9721 -1.1787 10 8 3.6267 0.3987 -2.0798 11 6 5.6865 1.1426 -1.2294 12 8 6.2625 1.7165 -0.3285 13 7 6.3850 0.6591 -2.2757 14 6 7.8396 0.8268 -2.3257 15 1 8.2479 0.7601 -1.3174 16 6 8.4500 -0.2728 -3.1969 17 6 9.9692 -0.0982 -3.2486 18 6 10.3051 1.2703 -3.8448 19 1 9.8972 1.3372 -4.8535 20 7 11.7597 1.4379 -3.8938 21 6 12.3203 2.2904 -4.8070 22 1 11.6901 2.8396 -5.4909 23 6 13.6986 2.4488 -4.8537 24 7 14.4666 1.7792 -4.0207 25 14 14.4634 3.6124 -6.0990 26 1 13.3917 4.2393 -6.9139 27 1 15.2259 4.6686 -5.3864 28 1 15.3802 2.8537 -6.9873 29 6 9.6946 2.3700 -2.9738 30 6 8.1756 2.1952 -2.9220 31 1 -0.3633 -1.0239 0.0888 32 1 -0.3633 0.5888 0.8422 33 1 -0.3633 0.4350 -0.9311 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.8108 2.7499 1.2407 37 1 1.5523 1.3764 2.1255 38 1 2.9067 3.9313 1.0913 39 1 3.0773 3.1499 2.6987 40 1 4.3527 1.3143 1.8018 41 1 4.9535 2.6774 0.8089 42 1 5.9246 0.2008 -2.9961 43 1 8.0418 -0.2063 -4.2053 44 1 8.2111 -1.2477 -2.7718 45 1 10.3772 -0.1650 -2.2400 46 1 10.4042 -0.8818 -3.8689 47 1 12.3256 0.9448 -3.2794 48 1 15.4297 1.8901 -4.0531 49 1 9.9343 3.3448 -3.3983 50 1 10.1026 2.3030 -1.9652 51 1 7.7675 2.2621 -3.9306 52 1 7.7407 2.9784 -2.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034773495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:14 Heat of formation + Delta-G solvation = -74.099324 kcal Electronic energy + Delta-G solvation = -29725.817024 eV Core-core repulsion = 25724.671718 eV Total energy + Delta-G solvation = -4001.145306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12490 -39.59330 -38.08521 -37.75129 -35.02273 -33.85650 -33.05432 -31.93846 -30.69041 -30.43667 -28.30757 -27.69408 -25.64981 -23.89583 -23.18389 -22.47633 -22.30767 -21.26504 -20.71914 -20.01283 -19.31818 -17.88265 -17.37901 -16.99002 -16.42467 -16.05754 -15.65953 -15.18189 -15.00643 -14.61840 -14.37489 -14.06270 -13.87468 -13.83679 -13.70852 -13.54115 -13.47470 -13.04259 -12.78643 -12.61368 -12.50031 -12.07403 -12.04761 -11.98334 -11.83446 -11.63385 -11.40603 -11.35729 -11.15577 -11.07144 -10.85081 -10.82356 -10.77295 -10.65917 -10.17001 -10.12589 -9.78456 -9.67892 -9.51480 -9.15540 -9.02065 -8.85757 -6.93562 -5.75064 -3.03489 1.27656 2.07404 3.05608 3.28158 3.44089 3.49842 3.51930 4.04134 4.14165 4.32445 4.36963 4.60175 4.71490 4.76944 4.83956 4.86500 4.97314 4.99907 5.07017 5.24315 5.25531 5.32337 5.46747 5.49351 5.51234 5.55116 5.58314 5.64165 5.66343 5.70275 5.71784 5.74154 5.80939 5.84823 5.85304 5.98716 6.03660 6.18483 6.22279 6.27611 6.43105 6.53401 6.59413 6.69913 6.89006 6.98036 7.13187 7.14253 7.54867 7.72400 7.88122 8.43779 9.54894 10.13353 10.47892 11.47734 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028245 B = 0.001944 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.105268 B =14401.518818 C =14800.793694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.135 3.865 4 H 0.080 0.920 5 C -0.128 4.128 6 C -0.137 4.137 7 C 0.091 3.909 8 N -0.589 5.589 9 C 0.521 3.479 10 O -0.521 6.521 11 C 0.508 3.492 12 O -0.516 6.516 13 N -0.692 5.692 14 C 0.144 3.856 15 H 0.092 0.908 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.176 3.824 19 H 0.047 0.953 20 N -0.725 5.725 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.131 4.131 30 C -0.124 4.124 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.410 0.590 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.897 -2.642 11.706 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.166 4.166 6 C -0.175 4.175 7 C -0.031 4.031 8 N -0.323 5.323 9 C 0.304 3.696 10 O -0.398 6.398 11 C 0.288 3.712 12 O -0.392 6.392 13 N -0.344 5.344 14 C 0.040 3.960 15 H 0.110 0.890 16 C -0.158 4.158 17 C -0.159 4.159 18 C 0.066 3.934 19 H 0.065 0.935 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.172 4.172 30 C -0.164 4.164 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.245 0.755 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.667 -2.455 11.641 31.037 hybrid contribution 0.453 0.333 -0.744 0.933 sum -28.214 -2.122 10.897 30.319 Atomic orbital electron populations 1.21715 0.94910 1.01990 1.01921 1.21933 0.96380 0.95911 1.03411 1.21783 0.79337 0.97111 0.98512 0.90219 1.22758 0.98604 0.99264 0.95967 1.22894 0.94110 0.98439 1.02043 1.22813 0.97849 0.96668 0.85804 1.48358 1.07301 1.58060 1.18590 1.19953 0.88153 0.79680 0.81776 1.90740 1.71109 1.40893 1.37020 1.19961 0.87653 0.80335 0.83255 1.90707 1.70741 1.40790 1.36984 1.45998 1.08899 1.56753 1.22740 1.21290 0.76972 0.96313 1.01379 0.89001 1.21766 0.97137 0.97224 0.99704 1.21755 0.92936 0.99348 1.01829 1.20253 0.86084 0.90862 0.96192 0.93511 1.42433 0.99834 1.52235 1.42050 1.19291 0.90144 1.17048 1.10253 0.91156 1.24740 0.96212 1.00538 0.99610 1.69666 1.03771 1.45184 1.39545 0.86143 0.79166 0.80348 0.80706 1.20585 1.21926 1.21926 1.22223 0.91777 1.01766 1.01457 1.21914 0.98425 0.95517 1.00499 0.92415 0.92531 0.92538 0.90187 0.91805 0.89831 0.90179 0.90408 0.89523 0.90975 0.87330 0.75460 0.91284 0.91664 0.91899 0.91196 0.78298 0.93608 0.91663 0.92410 0.92051 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.83 37.16 0.37 -0.48 16 2 C -0.14 -1.07 5.41 -26.73 -0.14 -1.21 16 3 C 0.14 1.06 2.92 -66.96 -0.20 0.86 16 4 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -0.66 5.55 -24.90 -0.14 -0.80 16 6 C -0.14 -0.78 7.10 -24.46 -0.17 -0.95 16 7 C 0.09 0.77 6.25 -2.41 -0.02 0.75 16 8 N -0.59 -5.86 3.06 -163.39 -0.50 -6.36 16 9 C 0.52 6.32 7.73 -11.59 -0.09 6.23 16 10 O -0.52 -7.07 15.27 5.50 0.08 -6.99 16 11 C 0.51 6.50 7.82 -11.59 -0.09 6.41 16 12 O -0.52 -7.47 13.37 5.50 0.07 -7.39 16 13 N -0.69 -8.19 5.07 -54.24 -0.28 -8.46 16 14 C 0.14 1.87 2.45 -67.93 -0.17 1.71 16 15 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 16 C -0.12 -1.48 5.39 -26.73 -0.14 -1.63 16 17 C -0.12 -1.88 5.39 -26.73 -0.14 -2.03 16 18 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.73 -17.97 5.12 -53.42 -0.27 -18.24 16 21 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 25 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 C -0.13 -2.33 5.50 -26.74 -0.15 -2.48 16 30 C -0.12 -1.81 5.50 -26.73 -0.15 -1.95 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.25 7.36 -51.93 -0.38 -0.13 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.82 6.55 -51.93 -0.34 0.48 16 35 H 0.06 0.48 8.01 -51.93 -0.42 0.06 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.36 7.76 -51.93 -0.40 -0.04 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.11 1.11 5.88 -51.93 -0.31 0.81 16 42 H 0.41 4.28 8.08 -40.82 -0.33 3.95 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 406.22 15.07 6.12 6.12 Total: -1.00 -31.80 406.22 -9.93 -41.72 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -9.19 Total: 9.23 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.66 Total: 0.42 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.32 Total: -60.56 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.16 Total: -14.38 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.80 -9.93 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034773495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.375 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds