Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 H 1.09001 * 109.87368 * 306.50483 * 3 2 1 5 5 C 1.54320 * 109.88204 * 67.67429 * 3 2 1 6 6 C 1.55161 * 102.94439 * 141.60985 * 5 3 2 7 7 C 1.55131 * 101.48526 * 324.33643 * 6 5 3 8 8 N 1.47023 * 109.88633 * 185.48347 * 3 2 1 9 9 C 1.34778 * 125.64672 * 61.60587 * 8 3 2 10 10 O 1.21347 * 119.99686 * 355.38996 * 9 8 3 11 11 C 1.49446 * 119.99830 * 175.39098 * 9 8 3 12 12 O 1.21351 * 120.00134 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99830 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99884 * 179.97438 * 13 11 9 15 15 H 1.08992 * 109.47553 * 35.00069 * 14 13 11 16 16 C 1.53000 * 109.47022 * 155.00358 * 14 13 11 17 17 C 1.53001 * 109.47191 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46753 * 299.99684 * 17 16 14 19 19 H 1.09003 * 109.47223 * 299.99527 * 18 17 16 20 20 N 1.46507 * 109.47161 * 179.97438 * 18 17 16 21 21 C 1.36935 * 120.00061 * 154.99448 * 20 18 17 22 22 H 1.07998 * 119.99829 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99623 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00498 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99792 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46737 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47274 * 119.99690 * 25 23 21 28 28 H 1.48500 * 109.46782 * 240.00275 * 25 23 21 29 29 C 1.52997 * 109.47510 * 60.00047 * 18 17 16 30 30 C 1.52993 * 109.46922 * 300.00170 * 29 18 17 31 31 H 1.09003 * 109.46977 * 184.95573 * 1 2 3 32 32 H 1.08992 * 109.46896 * 304.95775 * 1 2 3 33 33 H 1.09002 * 109.46809 * 64.96035 * 1 2 3 34 34 H 1.09002 * 109.47195 * 240.00229 * 2 1 3 35 35 H 1.09000 * 109.47213 * 120.00260 * 2 1 3 36 36 H 1.08997 * 110.72165 * 259.97392 * 5 3 2 37 37 H 1.09004 * 110.72307 * 23.25039 * 5 3 2 38 38 H 1.08999 * 111.00302 * 82.57366 * 6 5 3 39 39 H 1.08997 * 111.00626 * 206.38735 * 6 5 3 40 40 H 1.09002 * 110.49353 * 278.45403 * 7 6 5 41 41 H 1.08995 * 110.34343 * 156.05574 * 7 6 5 42 42 H 0.97001 * 120.00219 * 0.02562 * 13 11 9 43 43 H 1.08993 * 109.47718 * 59.99500 * 16 14 13 44 44 H 1.09002 * 109.46916 * 299.99226 * 16 14 13 45 45 H 1.09003 * 109.47319 * 59.99140 * 17 16 14 46 46 H 1.09003 * 109.47342 * 179.97438 * 17 16 14 47 47 H 0.96998 * 119.99395 * 335.00448 * 20 18 17 48 48 H 0.96998 * 120.00397 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.47176 * 179.97438 * 29 18 17 50 50 H 1.09003 * 109.46776 * 59.99538 * 29 18 17 51 51 H 1.09002 * 109.47329 * 299.99594 * 30 29 18 52 52 H 1.09003 * 109.47190 * 179.97438 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9951 -0.8240 5 6 1.6952 2.1210 1.3424 6 6 2.9525 2.9841 1.6286 7 6 4.0823 2.0780 1.0726 8 7 3.5043 1.4552 -0.1321 9 6 4.2027 0.9721 -1.1787 10 8 3.6267 0.3987 -2.0798 11 6 5.6865 1.1426 -1.2294 12 8 6.2625 1.7165 -0.3285 13 7 6.3850 0.6591 -2.2757 14 6 7.8396 0.8268 -2.3257 15 1 8.2479 0.7601 -1.3174 16 6 8.4500 -0.2728 -3.1969 17 6 9.9692 -0.0982 -3.2486 18 6 10.3051 1.2703 -3.8448 19 1 9.8972 1.3372 -4.8535 20 7 11.7597 1.4379 -3.8938 21 6 12.3203 2.2904 -4.8070 22 1 11.6901 2.8396 -5.4909 23 6 13.6986 2.4488 -4.8537 24 7 14.4666 1.7792 -4.0207 25 14 14.4634 3.6124 -6.0990 26 1 13.3917 4.2393 -6.9139 27 1 15.2259 4.6686 -5.3864 28 1 15.3802 2.8537 -6.9873 29 6 9.6946 2.3700 -2.9738 30 6 8.1756 2.1952 -2.9220 31 1 -0.3633 -1.0239 0.0888 32 1 -0.3633 0.5888 0.8422 33 1 -0.3633 0.4350 -0.9311 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.8108 2.7499 1.2407 37 1 1.5523 1.3764 2.1255 38 1 2.9067 3.9313 1.0913 39 1 3.0773 3.1499 2.6987 40 1 4.3527 1.3143 1.8018 41 1 4.9535 2.6774 0.8089 42 1 5.9246 0.2008 -2.9961 43 1 8.0418 -0.2063 -4.2053 44 1 8.2111 -1.2477 -2.7718 45 1 10.3772 -0.1650 -2.2400 46 1 10.4042 -0.8818 -3.8689 47 1 12.3256 0.9448 -3.2794 48 1 15.4297 1.8901 -4.0531 49 1 9.9343 3.3448 -3.3983 50 1 10.1026 2.3030 -1.9652 51 1 7.7675 2.2621 -3.9306 52 1 7.7407 2.9784 -2.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034773495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = -94.436961 kcal Electronic energy + Delta-G solvation = -29726.698930 eV Core-core repulsion = 25724.671718 eV Total energy + Delta-G solvation = -4002.027212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03205 -40.55790 -39.23491 -38.69491 -36.48660 -34.76132 -34.40117 -32.61405 -32.45644 -31.72136 -29.28140 -28.80595 -26.66655 -25.47495 -24.15998 -23.64002 -23.11446 -22.29198 -21.69476 -21.13223 -20.43681 -19.15963 -18.63131 -18.24639 -17.31022 -17.10556 -16.85907 -16.48711 -15.90447 -15.64411 -15.47338 -15.38064 -15.11226 -15.05700 -14.77115 -14.50844 -14.35415 -14.05379 -14.03948 -13.49458 -13.43937 -13.20686 -13.11037 -12.99103 -12.86644 -12.79420 -12.62306 -12.39520 -12.34254 -12.13029 -12.11112 -12.04283 -11.96862 -11.64877 -11.61354 -11.49477 -11.42464 -11.23094 -10.86923 -10.53418 -10.23472 -9.83211 -8.98723 -7.93221 -5.21028 0.30186 1.19132 1.47086 1.47457 1.57365 2.08158 2.40621 2.56845 3.22840 3.39722 3.59414 3.66097 3.71454 3.80614 3.85362 3.86912 4.17472 4.21487 4.26012 4.32706 4.34412 4.36432 4.46561 4.48218 4.55165 4.57220 4.62069 4.73412 4.79669 4.90015 4.92569 4.97057 4.98365 5.05936 5.08893 5.10124 5.13032 5.15152 5.23395 5.24816 5.26145 5.31923 5.35400 5.45950 5.50214 5.54846 5.63666 6.01125 6.21842 6.29817 6.64193 6.91285 7.35422 8.13035 8.35448 9.30565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028245 B = 0.001944 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.105268 B =14401.518818 C =14800.793694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.074 0.926 5 C -0.118 4.118 6 C -0.129 4.129 7 C 0.085 3.915 8 N -0.586 5.586 9 C 0.518 3.482 10 O -0.542 6.542 11 C 0.506 3.494 12 O -0.536 6.536 13 N -0.683 5.683 14 C 0.152 3.848 15 H 0.080 0.920 16 C -0.108 4.108 17 C -0.111 4.111 18 C 0.170 3.830 19 H 0.046 0.954 20 N -0.738 5.738 21 C -0.234 4.234 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.294 1.294 29 C -0.121 4.121 30 C -0.113 4.113 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.419 0.581 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.043 0.957 50 H 0.045 0.955 51 H 0.072 0.928 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.592 -2.498 12.153 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.156 4.156 6 C -0.167 4.167 7 C -0.037 4.037 8 N -0.319 5.319 9 C 0.300 3.700 10 O -0.420 6.420 11 C 0.287 3.713 12 O -0.413 6.413 13 N -0.335 5.335 14 C 0.048 3.952 15 H 0.098 0.902 16 C -0.146 4.146 17 C -0.150 4.150 18 C 0.062 3.938 19 H 0.064 0.936 20 N -0.378 5.378 21 C -0.366 4.366 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.221 1.221 29 C -0.161 4.161 30 C -0.152 4.152 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.256 0.744 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.204 0.796 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -31.439 -2.304 12.090 33.762 hybrid contribution 1.221 0.296 -0.836 1.509 sum -30.217 -2.008 11.254 32.307 Atomic orbital electron populations 1.21688 0.93208 1.02578 1.02581 1.21871 0.97811 0.95484 1.02046 1.22030 0.77861 0.97482 1.00103 0.90770 1.22778 0.98984 0.99430 0.94388 1.22889 0.92936 0.97738 1.03095 1.22907 0.98400 0.97025 0.85332 1.48537 1.08435 1.56771 1.18191 1.19808 0.87778 0.80057 0.82312 1.90729 1.71239 1.42115 1.37915 1.20187 0.88140 0.79904 0.83056 1.90710 1.71224 1.41641 1.37716 1.45844 1.08238 1.56505 1.22890 1.21068 0.77778 0.95595 1.00744 0.90217 1.21673 0.94276 0.98019 1.00677 1.21626 0.95504 0.96813 1.01088 1.20509 0.83187 0.93380 0.96713 0.93634 1.42660 1.02077 1.51690 1.41329 1.19654 0.90435 1.16506 1.10032 0.90737 1.25531 0.96912 1.02736 1.01908 1.69817 1.03595 1.47166 1.41566 0.85124 0.78301 0.78197 0.78482 1.19084 1.22309 1.22082 1.22004 0.94148 0.99942 1.00056 1.21776 0.95644 0.96531 1.01277 0.92129 0.90644 0.92846 0.93072 0.91610 0.87758 0.88965 0.90427 0.87460 0.90606 0.89319 0.74365 0.89698 0.89302 0.92350 0.91403 0.79635 0.94154 0.93861 0.93636 0.90885 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.83 71.98 0.71 -0.66 16 2 C -0.13 -1.91 5.41 30.59 0.17 -1.75 16 3 C 0.13 1.80 2.92 45.34 0.13 1.93 16 4 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.12 -0.87 5.55 31.78 0.18 -0.69 16 6 C -0.13 -1.15 7.10 32.07 0.23 -0.92 16 7 C 0.08 1.35 6.25 86.93 0.54 1.89 16 8 N -0.59 -11.21 3.06 -789.20 -2.42 -13.63 16 9 C 0.52 12.34 7.73 87.27 0.67 13.02 16 10 O -0.54 -14.54 15.27 -3.24 -0.05 -14.59 16 11 C 0.51 12.69 7.82 87.27 0.68 13.37 16 12 O -0.54 -15.41 13.37 -3.25 -0.04 -15.46 16 13 N -0.68 -15.26 5.07 -443.87 -2.25 -17.51 16 14 C 0.15 3.77 2.45 44.99 0.11 3.88 16 15 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 16 C -0.11 -2.44 5.39 30.59 0.16 -2.28 16 17 C -0.11 -3.41 5.39 30.59 0.16 -3.24 16 18 C 0.17 6.54 2.77 44.99 0.12 6.66 16 19 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 20 N -0.74 -37.18 5.12 -322.93 -1.65 -38.84 16 21 C -0.23 -13.05 9.93 84.03 0.83 -12.22 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 25 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 29 C -0.12 -4.32 5.50 30.59 0.17 -4.15 16 30 C -0.11 -3.19 5.50 30.59 0.17 -3.02 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.45 7.36 -2.39 -0.02 0.43 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 1.04 6.55 -2.39 -0.02 1.02 16 35 H 0.07 0.90 8.01 -2.39 -0.02 0.88 16 36 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.51 7.76 -2.38 -0.02 0.49 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.80 5.88 -2.39 -0.01 1.79 16 42 H 0.42 8.02 8.08 -92.71 -0.75 7.27 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.37 20.17 7.80 -92.71 -0.72 19.45 16 48 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.89 406.22 0.85 -69.04 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.56 Total: 34.25 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.51 Total: 7.71 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -6.04 Total: -129.64 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.09 Total: -30.05 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -69.89 0.85 -69.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034773495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.396 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds