Wall clock time and date at job start Tue Mar 31 2020 20:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.49961 * 305.00645 * 3 2 1 5 5 C 1.53196 * 109.49598 * 65.06552 * 3 2 1 6 6 N 1.46934 * 108.77223 * 174.55466 * 5 3 2 7 7 C 1.34782 * 120.60162 * 126.42309 * 6 5 3 8 8 O 1.21279 * 120.00125 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.46855 * 180.02562 * 9 7 6 11 11 C 1.45754 * 117.94812 * 89.99952 * 10 9 7 12 12 C 1.52922 * 110.48375 * 160.92419 * 11 10 9 13 13 C 1.53341 * 108.67729 * 50.75132 * 12 11 10 14 14 C 1.53070 * 108.42656 * 292.46771 * 13 12 11 15 15 C 1.33354 * 117.94492 * 269.73423 * 10 9 7 16 16 O 1.21284 * 118.24106 * 2.22251 * 15 10 9 17 17 C 1.46924 * 118.76578 * 306.44423 * 6 5 3 18 18 C 1.53193 * 108.77426 * 53.58963 * 17 6 5 19 19 C 1.53038 * 109.50012 * 184.93683 * 3 2 1 20 20 H 1.09001 * 109.46364 * 298.70269 * 19 3 2 21 21 N 1.46495 * 109.46285 * 58.66757 * 19 3 2 22 22 C 1.36935 * 120.00175 * 205.00297 * 21 19 3 23 23 H 1.08001 * 119.99905 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99966 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99859 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00208 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47111 * 90.00071 * 26 24 22 28 28 H 1.48503 * 109.47226 * 209.99678 * 26 24 22 29 29 H 1.48500 * 109.47278 * 329.99966 * 26 24 22 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.09001 * 109.58552 * 294.37777 * 5 3 2 36 36 H 1.09004 * 109.58283 * 54.79884 * 5 3 2 37 37 H 1.09004 * 109.47079 * 299.99592 * 9 7 6 38 38 H 1.08995 * 109.47337 * 59.99822 * 9 7 6 39 39 H 1.08997 * 109.29564 * 281.23120 * 11 10 9 40 40 H 1.08997 * 109.30233 * 40.60934 * 11 10 9 41 41 H 1.09008 * 109.60105 * 170.50663 * 12 11 10 42 42 H 1.09003 * 109.60306 * 290.98878 * 12 11 10 43 43 H 1.09000 * 109.67386 * 52.20177 * 13 12 11 44 44 H 1.09004 * 109.67354 * 172.73326 * 13 12 11 45 45 H 1.08994 * 109.40478 * 169.03112 * 14 13 12 46 46 H 1.09006 * 109.39942 * 288.86227 * 14 13 12 47 47 H 1.09002 * 109.58724 * 293.79962 * 17 6 5 48 48 H 1.09003 * 109.58827 * 173.37552 * 17 6 5 49 49 H 1.09004 * 109.49602 * 185.41377 * 18 17 6 50 50 H 1.08998 * 109.49620 * 65.31619 * 18 17 6 51 51 H 0.96999 * 120.00268 * 24.99666 * 21 19 3 52 52 H 0.97002 * 120.00115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2437 3.4648 1.3502 7 6 1.4840 4.5570 1.5661 8 8 0.2878 4.4411 1.7293 9 6 2.1210 5.9223 1.6046 10 7 1.0915 6.9346 1.8527 11 6 0.7968 7.2843 3.2366 12 6 0.0830 8.6349 3.3069 13 6 -1.1019 8.6153 2.3338 14 6 -0.5542 8.5593 0.9056 15 6 0.4865 7.4822 0.7979 16 8 0.7896 7.0856 -0.3074 17 6 3.6940 3.5892 1.1509 18 6 4.0738 2.8881 -0.1572 19 6 3.5653 1.4450 -0.1241 20 1 4.0001 0.9263 0.7303 21 7 3.9556 0.7617 -1.3598 22 6 5.1938 0.1859 -1.4621 23 1 5.8828 0.2359 -0.6319 24 6 5.5634 -0.4620 -2.6327 25 7 6.7537 -1.0150 -2.7312 26 14 4.3714 -0.5491 -4.0683 27 1 4.5720 0.6286 -4.9504 28 1 4.6169 -1.7935 -4.8408 29 1 2.9779 -0.5518 -3.5553 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.5511 2.2168 1.3558 36 1 1.9931 1.5388 2.1548 37 1 2.8621 5.9550 2.4032 38 1 2.6065 6.1237 0.6498 39 1 0.1589 6.5165 3.6742 40 1 1.7280 7.3391 3.8005 41 1 -0.2793 8.8047 4.3209 42 1 0.7745 9.4291 3.0253 43 1 -1.7192 7.7375 2.5248 44 1 -1.6979 9.5188 2.4631 45 1 -1.3693 8.3493 0.2131 46 1 -0.1027 9.5187 0.6530 47 1 4.2188 3.1197 1.9829 48 1 3.9659 4.6432 1.0928 49 1 5.1581 2.8894 -0.2691 50 1 3.6203 3.4145 -0.9970 51 1 3.3370 0.7170 -2.1055 52 1 7.0122 -1.4675 -3.5494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037879406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:12 Heat of formation + Delta-G solvation = -63.114739 kcal Electronic energy + Delta-G solvation = -30918.052734 eV Core-core repulsion = 26917.383755 eV Total energy + Delta-G solvation = -4000.668978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00189 -39.79847 -37.81192 -36.68436 -34.83831 -34.35837 -33.82696 -31.77146 -30.09466 -29.88646 -29.48577 -27.78038 -25.12316 -24.54957 -23.92739 -22.73718 -22.30576 -20.82573 -20.16430 -19.40738 -18.54098 -17.67408 -17.31759 -16.88573 -16.74326 -15.80766 -15.60221 -15.19267 -14.87019 -14.57316 -14.39355 -14.23594 -13.93878 -13.75712 -13.68492 -13.51134 -13.35318 -13.16516 -13.01869 -12.68705 -12.42518 -12.14218 -12.06772 -11.95109 -11.79794 -11.62476 -11.40402 -11.35216 -11.33831 -11.01962 -10.99778 -10.77407 -10.40597 -10.30757 -10.19479 -10.02672 -9.86194 -9.73082 -9.57526 -8.94761 -8.85220 -8.51590 -7.27103 -5.78143 -3.13261 2.37727 2.64346 2.66666 3.19301 3.38045 3.42032 3.46381 4.24017 4.32224 4.34722 4.45057 4.48833 4.58955 4.86322 4.93047 5.01469 5.03949 5.06899 5.10260 5.15571 5.23415 5.26272 5.34437 5.36868 5.42904 5.48878 5.50762 5.53212 5.54876 5.60500 5.60710 5.79544 5.80446 5.92862 6.00325 6.02613 6.06556 6.12152 6.27197 6.30201 6.35406 6.48053 6.58224 6.72541 6.81967 6.96863 7.20309 7.46216 7.97471 7.97677 8.20861 8.41162 9.19522 9.92606 10.12710 11.40133 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.002770 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.977607 B =10106.201553 C =10430.381937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.069 0.931 5 C 0.122 3.878 6 N -0.606 5.606 7 C 0.503 3.497 8 O -0.541 6.541 9 C 0.089 3.911 10 N -0.586 5.586 11 C 0.113 3.887 12 C -0.134 4.134 13 C -0.125 4.125 14 C -0.131 4.131 15 C 0.520 3.480 16 O -0.549 6.549 17 C 0.107 3.893 18 C -0.153 4.153 19 C 0.190 3.810 20 H 0.057 0.943 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 19.216 15.810 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.340 5.340 7 C 0.289 3.711 8 O -0.419 6.419 9 C -0.038 4.038 10 N -0.318 5.318 11 C -0.010 4.010 12 C -0.172 4.172 13 C -0.162 4.162 14 C -0.170 4.170 15 C 0.309 3.691 16 O -0.426 6.426 17 C -0.017 4.017 18 C -0.194 4.194 19 C 0.080 3.920 20 H 0.075 0.925 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.697 18.871 15.362 27.923 hybrid contribution -0.562 -0.200 -1.167 1.311 sum -14.259 18.671 14.195 27.448 Atomic orbital electron populations 1.21849 0.96682 1.01105 1.01430 1.21460 0.94515 0.95721 1.03388 1.21833 0.97628 0.96250 0.97188 0.91283 1.21697 0.99415 0.81488 0.97502 1.48190 1.08577 1.06688 1.70517 1.20988 0.87320 0.86367 0.76415 1.90651 1.14764 1.86377 1.50080 1.21431 0.90884 0.86129 1.05331 1.46889 1.39285 1.38939 1.06732 1.21465 1.00733 0.97161 0.81625 1.21875 0.97754 0.96620 1.00923 1.21665 0.97868 1.03346 0.93356 1.21619 0.98055 0.98145 0.99208 1.20166 0.82129 0.83056 0.83785 1.90754 1.63795 1.62347 1.25719 1.21886 0.79304 1.01096 0.99369 1.22656 1.02649 0.98805 0.95322 1.20142 0.90645 0.90626 0.90610 0.92549 1.42780 1.16480 1.66268 1.13148 1.19040 0.90383 1.27232 1.00432 0.89202 1.24647 0.96414 1.00274 0.97681 1.69696 1.19271 1.41657 1.27545 0.86600 0.81190 0.77309 0.83719 1.21156 1.21816 1.20261 0.93006 0.93060 0.93103 0.91969 0.90435 0.89236 0.91541 0.87625 0.86520 0.91151 0.90632 0.89629 0.90881 0.90788 0.90508 0.88137 0.88373 0.91056 0.90562 0.89979 0.92107 0.80595 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 3 C -0.11 -1.75 1.92 -90.50 -0.17 -1.93 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.74 5.32 -3.70 -0.02 1.72 16 6 N -0.61 -8.32 2.97 -172.75 -0.51 -8.83 16 7 C 0.50 7.21 7.75 -10.98 -0.09 7.12 16 8 O -0.54 -9.47 15.84 5.56 0.09 -9.38 16 9 C 0.09 0.98 4.03 -5.19 -0.02 0.96 16 10 N -0.59 -6.28 2.30 -176.35 -0.41 -6.69 16 11 C 0.11 0.80 6.39 -4.48 -0.03 0.77 16 12 C -0.13 -0.66 6.02 -26.59 -0.16 -0.82 16 13 C -0.12 -0.74 6.03 -26.52 -0.16 -0.90 16 14 C -0.13 -1.09 6.03 -28.11 -0.17 -1.26 16 15 C 0.52 6.55 7.45 -11.88 -0.09 6.47 16 16 O -0.55 -9.43 16.21 5.55 0.09 -9.34 16 17 C 0.11 1.31 6.34 -3.71 -0.02 1.28 16 18 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 19 C 0.19 3.45 2.19 -67.89 -0.15 3.30 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.74 -16.96 4.14 -53.39 -0.22 -17.18 16 22 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 23 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 26 Si 0.88 22.17 27.73 -169.99 -4.71 17.45 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 30 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.42 7.22 -51.93 -0.37 1.04 16 35 H 0.09 1.37 5.72 -51.93 -0.30 1.07 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 0.78 7.66 -51.93 -0.40 0.39 16 38 H 0.12 1.42 6.75 -51.93 -0.35 1.07 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 41 H 0.09 0.28 8.14 -51.92 -0.42 -0.15 16 42 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 43 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 49 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.36 8.36 5.37 -40.82 -0.22 8.14 16 52 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -35.77 399.75 -9.20 -44.97 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -9.06 Total: 7.35 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.26 Total: 3.81 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.37 Total: -60.89 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.77 -9.20 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037879406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.148 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds