Wall clock time and date at job start Tue Mar 31 2020 20:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47077 * 2 1 4 4 H 1.09001 * 109.49454 * 305.06232 * 3 2 1 5 5 C 1.53621 * 109.43044 * 65.29231 * 3 2 1 6 6 N 1.46929 * 108.54028 * 174.72505 * 5 3 2 7 7 C 1.34777 * 120.63103 * 126.36847 * 6 5 3 8 8 O 1.21281 * 119.99733 * 359.71442 * 7 6 5 9 9 C 1.50703 * 119.99902 * 179.71605 * 7 6 5 10 10 N 1.46500 * 109.47000 * 179.97438 * 9 7 6 11 11 C 1.45756 * 117.94952 * 270.02482 * 10 9 7 12 12 C 1.52904 * 110.49853 * 160.93769 * 11 10 9 13 13 C 1.53347 * 108.68532 * 50.72473 * 12 11 10 14 14 C 1.53076 * 108.42242 * 292.48235 * 13 12 11 15 15 C 1.33347 * 117.94744 * 89.99903 * 10 9 7 16 16 O 1.21282 * 118.24464 * 2.20551 * 15 10 9 17 17 C 1.46931 * 118.73817 * 306.08634 * 6 5 3 18 18 C 1.53199 * 108.77007 * 53.86607 * 17 6 5 19 19 C 1.53039 * 109.30970 * 305.36065 * 18 17 6 20 20 H 1.09001 * 109.45603 * 181.37339 * 19 18 17 21 21 N 1.46496 * 109.46180 * 301.34518 * 19 18 17 22 22 C 1.36939 * 120.00202 * 275.00204 * 21 19 18 23 23 H 1.07998 * 119.99737 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99929 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99980 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99954 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46972 * 90.00251 * 26 24 22 28 28 H 1.48498 * 109.47105 * 210.00082 * 26 24 22 29 29 H 1.48502 * 109.47423 * 330.00542 * 26 24 22 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46845 * 300.00011 * 1 2 3 32 32 H 1.09000 * 109.47195 * 60.00089 * 1 2 3 33 33 H 1.09003 * 109.46845 * 239.99989 * 2 1 3 34 34 H 1.09000 * 109.47195 * 119.99911 * 2 1 3 35 35 H 1.08995 * 109.74242 * 54.98378 * 5 3 2 36 36 H 1.09003 * 109.66184 * 294.41380 * 5 3 2 37 37 H 1.09001 * 109.46961 * 60.00155 * 9 7 6 38 38 H 1.08996 * 109.47249 * 300.00106 * 9 7 6 39 39 H 1.08995 * 109.29964 * 281.23999 * 11 10 9 40 40 H 1.09001 * 109.30058 * 40.81925 * 11 10 9 41 41 H 1.08997 * 109.59044 * 290.97160 * 12 11 10 42 42 H 1.08997 * 109.60802 * 170.48810 * 12 11 10 43 43 H 1.08991 * 109.67511 * 172.75158 * 13 12 11 44 44 H 1.09004 * 109.67114 * 52.21126 * 13 12 11 45 45 H 1.08999 * 109.39845 * 169.02952 * 14 13 12 46 46 H 1.08998 * 109.40193 * 288.85205 * 14 13 12 47 47 H 1.08999 * 109.58136 * 173.64811 * 17 6 5 48 48 H 1.08999 * 109.58804 * 293.93777 * 17 6 5 49 49 H 1.09001 * 109.49698 * 65.31513 * 18 17 6 50 50 H 1.09000 * 109.49327 * 185.37823 * 18 17 6 51 51 H 0.97000 * 119.99824 * 95.00281 * 21 19 18 52 52 H 0.96995 * 120.00142 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 -0.8411 5 6 1.6394 2.1262 1.3161 6 7 2.2452 3.4643 1.3507 7 6 1.4859 4.5564 1.5682 8 8 0.2899 4.4405 1.7325 9 6 2.1231 5.9216 1.6071 10 7 1.0938 6.9339 1.8559 11 6 0.4277 7.5285 0.7038 12 6 -0.8914 8.1777 1.1240 13 6 -0.6256 9.1012 2.3190 14 6 -0.2378 8.2369 3.5214 15 6 0.8246 7.2534 3.1223 16 8 1.4721 6.7209 3.9986 17 6 3.6954 3.5887 1.1499 18 6 4.0737 2.8881 -0.1589 19 6 3.5653 1.4450 -0.1257 20 1 3.8544 0.9369 -1.0457 21 7 4.1508 0.7475 1.0218 22 6 5.3880 0.1705 0.9139 23 1 5.9323 0.2301 -0.0170 24 6 5.9426 -0.4909 2.0012 25 7 7.1314 -1.0458 1.8974 26 14 5.0014 -0.5932 3.6115 27 1 4.1574 -1.8151 3.6147 28 1 5.9613 -0.6517 4.7430 29 1 4.1372 0.6056 3.7569 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0008 1.5395 2.1606 36 1 0.5543 2.2149 1.3678 37 1 2.6076 6.1237 0.6519 38 1 2.8651 5.9536 2.4049 39 1 1.0770 8.2849 0.2631 40 1 0.2250 6.7530 -0.0349 41 1 -1.6042 7.4046 1.4107 42 1 -1.2932 8.7595 0.2945 43 1 -1.5262 9.6696 2.5509 44 1 0.1892 9.7848 2.0804 45 1 0.1414 8.8757 4.3191 46 1 -1.1150 7.6963 3.8767 47 1 3.9671 4.6427 1.0919 48 1 4.2210 3.1211 1.9824 49 1 3.6193 3.4148 -0.9981 50 1 5.1578 2.8899 -0.2723 51 1 3.6621 0.6943 1.8580 52 1 7.5191 -1.5076 2.6571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037879408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:17 Heat of formation + Delta-G solvation = -83.322557 kcal Electronic energy + Delta-G solvation = -31362.831405 eV Core-core repulsion = 27361.286150 eV Total energy + Delta-G solvation = -4001.545255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97644 -40.98820 -39.19842 -37.50216 -35.99670 -35.47986 -34.96190 -33.57906 -31.48432 -30.81610 -30.45921 -28.89688 -26.34837 -25.38286 -25.06500 -24.96352 -23.28614 -22.17499 -21.08194 -19.94934 -19.72801 -19.49372 -18.39742 -17.81358 -17.61040 -16.94772 -16.75098 -16.37893 -16.24877 -15.95056 -15.54007 -15.19383 -15.04737 -14.96879 -14.86097 -14.66434 -14.39974 -14.30143 -14.23923 -14.12636 -13.79080 -13.36026 -13.14162 -13.02823 -12.94923 -12.73470 -12.65088 -12.49035 -12.25056 -12.20270 -12.07187 -11.88735 -11.86114 -11.82293 -11.63089 -11.55385 -11.18860 -11.12438 -10.89314 -10.76522 -9.78409 -9.68541 -9.24321 -8.00501 -5.30059 1.33291 1.34480 1.40272 1.41745 1.52970 1.83153 2.17121 2.46021 3.32134 3.42987 3.56993 3.60438 3.75282 3.84467 3.90051 3.92314 3.93410 3.97288 4.11396 4.22357 4.26866 4.32617 4.34756 4.40667 4.50665 4.55385 4.55832 4.60523 4.63775 4.78009 4.82479 4.86106 4.93250 4.94484 5.01195 5.05381 5.12463 5.14338 5.16226 5.19742 5.25744 5.30847 5.35434 5.38553 5.46171 5.61968 5.83423 6.24391 6.35341 6.39496 7.01884 7.10937 7.11226 7.88724 8.05659 9.21538 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.003263 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.125269 B = 8580.150763 C = 9271.662821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.090 4.090 4 H 0.095 0.905 5 C 0.120 3.880 6 N -0.603 5.603 7 C 0.498 3.502 8 O -0.577 6.577 9 C 0.088 3.912 10 N -0.584 5.584 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.130 4.130 15 C 0.508 3.492 16 O -0.609 6.609 17 C 0.113 3.887 18 C -0.140 4.140 19 C 0.175 3.825 20 H 0.055 0.945 21 N -0.744 5.744 22 C -0.207 4.207 23 H 0.067 0.933 24 C -0.057 4.057 25 N -0.982 5.982 26 Si 0.934 3.066 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.068 0.932 51 H 0.359 0.641 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 22.550 -7.119 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.110 4.110 4 H 0.113 0.887 5 C -0.003 4.003 6 N -0.335 5.335 7 C 0.286 3.714 8 O -0.457 6.457 9 C -0.039 4.039 10 N -0.314 5.314 11 C -0.014 4.014 12 C -0.171 4.171 13 C -0.151 4.151 14 C -0.170 4.170 15 C 0.298 3.702 16 O -0.491 6.491 17 C -0.009 4.009 18 C -0.180 4.180 19 C 0.067 3.933 20 H 0.073 0.927 21 N -0.388 5.388 22 C -0.338 4.338 23 H 0.085 0.915 24 C -0.248 4.248 25 N -0.634 5.634 26 Si 0.764 3.236 27 H -0.209 1.209 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.166 0.834 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.127 0.873 48 H 0.067 0.933 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.193 0.807 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.202 22.202 -6.703 29.482 hybrid contribution 0.235 -1.165 1.606 1.998 sum -17.967 21.037 -5.098 28.131 Atomic orbital electron populations 1.21786 0.94664 1.01994 1.01918 1.21417 0.96222 0.95275 1.02038 1.21765 0.95478 0.96530 0.97250 0.88671 1.21643 0.98895 0.82224 0.97505 1.48213 1.09019 1.06241 1.70071 1.21591 0.86951 0.87481 0.75339 1.90624 1.16417 1.87091 1.51535 1.21497 0.91716 0.84398 1.06259 1.47121 1.38732 1.38597 1.06956 1.21753 0.94999 0.98270 0.86367 1.21895 0.95734 0.99284 1.00184 1.21666 1.03787 0.97237 0.92454 1.21693 0.96813 0.97004 1.01450 1.21000 0.84417 0.82945 0.81808 1.90705 1.52393 1.56524 1.49500 1.21777 0.78281 1.02228 0.98588 1.22370 1.01708 0.97198 0.96773 1.20473 0.90950 0.91663 0.90203 0.92736 1.42872 1.18350 1.65903 1.11689 1.19023 0.93003 1.24212 0.97588 0.91494 1.25215 0.97423 1.01543 1.00643 1.69828 1.18356 1.43600 1.31639 0.85737 0.78142 0.78224 0.81516 1.20884 1.22730 1.19121 0.92143 0.93406 0.91574 0.91391 0.93773 0.94061 0.89522 0.83420 0.87669 0.88437 0.90824 0.92529 0.86768 0.88321 0.89838 0.87580 0.88429 0.87312 0.93263 0.89373 0.91349 0.80692 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.68 71.98 0.70 -2.76 16 2 C -0.11 -3.20 5.19 30.60 0.16 -3.04 16 3 C -0.09 -2.59 2.15 -10.57 -0.02 -2.61 16 4 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 3.81 5.05 86.51 0.44 4.24 16 6 N -0.60 -17.86 2.97 -818.04 -2.43 -20.28 16 7 C 0.50 14.75 7.75 87.66 0.68 15.43 16 8 O -0.58 -20.65 15.83 -3.03 -0.05 -20.70 16 9 C 0.09 1.96 4.05 85.63 0.35 2.31 16 10 N -0.58 -12.27 2.30 -831.03 -1.92 -14.19 16 11 C 0.11 1.32 6.32 86.49 0.55 1.87 16 12 C -0.13 -1.25 6.02 30.68 0.18 -1.06 16 13 C -0.11 -0.97 6.03 30.74 0.19 -0.78 16 14 C -0.13 -2.12 6.03 29.71 0.18 -1.94 16 15 C 0.51 13.05 7.44 87.71 0.65 13.70 16 16 O -0.61 -21.90 16.18 -3.04 -0.05 -21.95 16 17 C 0.11 3.16 6.08 86.36 0.52 3.69 16 18 C -0.14 -3.92 5.78 30.67 0.18 -3.74 16 19 C 0.17 5.89 2.53 45.02 0.11 6.00 16 20 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 21 N -0.74 -32.27 3.53 -322.81 -1.14 -33.41 16 22 C -0.21 -11.09 10.41 84.03 0.87 -10.22 16 23 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 24 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 25 N -0.98 -62.14 13.97 21.65 0.30 -61.84 16 26 Si 0.93 46.52 27.74 68.60 1.90 48.42 16 27 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 29 H -0.27 -12.47 6.52 99.48 0.65 -11.83 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.17 6.70 -2.39 -0.02 1.16 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.49 7.70 -2.39 -0.02 1.48 16 35 H 0.04 1.50 6.63 -2.39 -0.02 1.48 16 36 H 0.09 2.79 5.73 -2.39 -0.01 2.77 16 37 H 0.15 2.00 7.56 -2.39 -0.02 1.98 16 38 H 0.11 2.67 6.94 -2.39 -0.02 2.66 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 41 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.55 8.13 -2.39 -0.02 0.53 16 45 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.11 2.21 5.93 -2.39 -0.01 2.20 16 48 H 0.05 1.72 7.74 -2.39 -0.02 1.70 16 49 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.36 15.95 3.80 -92.71 -0.35 15.59 16 52 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.29 396.37 3.32 -75.96 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.49 Total: 29.73 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.20 Total: 18.25 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.18 Total: -129.72 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.10 Total: -42.65 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -79.29 3.32 -75.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037879408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.359 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds