Wall clock time and date at job start Tue Mar 31 2020 20:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49598 * 55.00247 * 3 2 1 5 5 C 1.53196 * 109.49885 * 294.93995 * 3 2 1 6 6 N 1.46919 * 108.77266 * 185.41441 * 5 3 2 7 7 C 1.34780 * 120.63139 * 233.58335 * 6 5 3 8 8 O 1.21284 * 119.99419 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00289 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.46924 * 180.02562 * 9 7 6 11 11 C 1.45742 * 117.95021 * 90.00222 * 10 9 7 12 12 C 1.52921 * 110.49288 * 160.92309 * 11 10 9 13 13 C 1.53347 * 108.67204 * 50.75078 * 12 11 10 14 14 C 1.53072 * 108.42329 * 292.46867 * 13 12 11 15 15 C 1.33356 * 117.94077 * 269.73512 * 10 9 7 16 16 O 1.21278 * 118.25061 * 2.22459 * 15 10 9 17 17 C 1.46929 * 118.74296 * 53.60862 * 6 5 3 18 18 C 1.53193 * 108.77324 * 306.38918 * 17 6 5 19 19 C 1.53037 * 109.49694 * 175.06518 * 3 2 1 20 20 H 1.09002 * 109.45947 * 61.29881 * 19 3 2 21 21 N 1.46500 * 109.46163 * 301.33960 * 19 3 2 22 22 C 1.36941 * 119.99966 * 154.99932 * 21 19 3 23 23 H 1.07999 * 120.00158 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99807 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47481 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47477 * 119.99984 * 26 24 22 29 29 H 1.48508 * 109.47084 * 239.99706 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 35 35 H 1.08998 * 109.58251 * 305.20057 * 5 3 2 36 36 H 1.08996 * 109.58381 * 65.62524 * 5 3 2 37 37 H 1.08997 * 109.47255 * 299.99631 * 9 7 6 38 38 H 1.09001 * 109.47249 * 59.99917 * 9 7 6 39 39 H 1.09000 * 109.30205 * 281.23497 * 11 10 9 40 40 H 1.09003 * 109.30717 * 40.60516 * 11 10 9 41 41 H 1.08997 * 109.60923 * 170.50377 * 12 11 10 42 42 H 1.08994 * 109.60200 * 290.83572 * 12 11 10 43 43 H 1.08996 * 109.67294 * 52.20469 * 13 12 11 44 44 H 1.09006 * 109.67366 * 172.70366 * 13 12 11 45 45 H 1.09007 * 109.39839 * 169.02546 * 14 13 12 46 46 H 1.08991 * 109.40304 * 288.77230 * 14 13 12 47 47 H 1.08998 * 109.58533 * 66.17365 * 17 6 5 48 48 H 1.09001 * 109.58873 * 186.45849 * 17 6 5 49 49 H 1.08994 * 109.49546 * 174.58556 * 18 17 6 50 50 H 1.08998 * 109.49473 * 294.68304 * 18 17 6 51 51 H 0.96996 * 119.99915 * 334.99896 * 21 19 3 52 52 H 0.97000 * 119.99980 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4651 -1.3498 7 6 1.4833 4.5574 -1.5653 8 8 0.2870 4.4415 -1.7278 9 6 2.1203 5.9225 -1.6045 10 7 1.0906 6.9350 -1.8509 11 6 0.4269 7.5292 -0.6974 12 6 -0.2407 8.8492 -1.0851 13 6 -1.1029 8.6158 -2.3315 14 6 -0.1759 8.3087 -3.5103 15 6 0.8232 7.2591 -3.1165 16 8 1.4150 6.6713 -3.9969 17 6 3.6934 3.5894 -1.1513 18 6 4.0740 2.8880 0.1564 19 6 3.5654 1.4449 0.1241 20 1 4.0001 0.9263 -0.7304 21 7 3.9557 0.7614 1.3597 22 6 5.1939 0.1856 1.4619 23 1 5.8830 0.2357 0.6317 24 6 5.5636 -0.4625 2.6324 25 7 4.7237 -0.5240 3.6439 26 14 7.2529 -1.2473 2.7720 27 1 8.0009 -1.0406 1.5060 28 1 7.9975 -0.6230 3.8950 29 1 7.1030 -2.7028 3.0260 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.9930 1.5390 -2.1547 36 1 0.5511 2.2169 -1.3556 37 1 2.6065 6.1241 -0.6500 38 1 2.8610 5.9551 -2.4035 39 1 -0.3292 6.8396 -0.3221 40 1 1.1621 7.7137 0.0859 41 1 -0.8697 9.1956 -0.2651 42 1 0.5233 9.5960 -1.3006 43 1 -1.7725 7.7727 -2.1619 44 1 -1.6868 9.5108 -2.5467 45 1 -0.7679 7.9508 -4.3527 46 1 0.3532 9.2163 -3.8009 47 1 4.2177 3.1201 -1.9836 48 1 3.9656 4.6434 -1.0956 49 1 5.1582 2.8892 0.2677 50 1 3.6209 3.4142 0.9966 51 1 3.3370 0.7167 2.1054 52 1 4.9820 -0.9765 4.4621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037879409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:20 Heat of formation + Delta-G solvation = -88.922270 kcal Electronic energy + Delta-G solvation = -30771.350688 eV Core-core repulsion = 26769.562611 eV Total energy + Delta-G solvation = -4001.788077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93214 -40.87970 -39.05929 -37.48250 -36.20155 -35.42977 -34.93458 -33.45211 -31.08046 -30.82258 -30.45014 -28.77009 -26.49815 -25.40148 -25.04694 -24.39021 -23.21194 -22.22586 -21.31949 -20.45899 -19.34572 -19.04254 -18.50855 -17.78804 -17.57373 -16.87770 -16.75553 -16.41679 -16.20534 -15.65233 -15.52780 -15.22441 -15.17569 -14.76906 -14.73282 -14.61469 -14.37209 -14.23468 -14.22277 -14.02244 -13.61805 -13.14713 -13.07527 -13.02765 -12.86878 -12.72840 -12.66299 -12.55222 -12.21449 -12.13231 -12.04955 -11.86313 -11.84954 -11.80896 -11.59737 -11.53989 -11.14729 -11.10407 -10.83088 -10.74063 -9.77744 -9.68762 -8.95095 -7.90438 -5.17615 1.45616 1.48509 1.49602 1.54885 1.58595 1.84866 2.18917 2.58361 3.42465 3.46566 3.58558 3.75930 3.79548 3.84292 3.90527 3.94736 3.99316 4.03963 4.16738 4.23643 4.32789 4.33486 4.38618 4.45335 4.47965 4.55366 4.61780 4.62446 4.73402 4.78666 4.82400 4.85415 4.88505 4.92647 4.99451 5.04915 5.09132 5.11268 5.14615 5.24135 5.31694 5.36429 5.37576 5.45748 5.52141 5.58216 5.65439 6.31038 6.36203 6.41117 7.04481 7.13496 7.38035 8.13773 8.37255 9.33220 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002586 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.596040 B =10826.593124 C =11367.210997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.089 4.089 4 H 0.055 0.945 5 C 0.127 3.873 6 N -0.606 5.606 7 C 0.498 3.502 8 O -0.579 6.579 9 C 0.088 3.912 10 N -0.584 5.584 11 C 0.104 3.896 12 C -0.127 4.127 13 C -0.121 4.121 14 C -0.128 4.128 15 C 0.509 3.491 16 O -0.604 6.604 17 C 0.113 3.887 18 C -0.140 4.140 19 C 0.178 3.822 20 H 0.044 0.956 21 N -0.730 5.730 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.299 1.299 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.070 0.930 50 H 0.052 0.948 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 21.082 -10.919 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.109 4.109 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.339 5.339 7 C 0.286 3.714 8 O -0.459 6.459 9 C -0.038 4.038 10 N -0.314 5.314 11 C -0.018 4.018 12 C -0.165 4.165 13 C -0.158 4.158 14 C -0.167 4.167 15 C 0.300 3.700 16 O -0.486 6.486 17 C -0.010 4.010 18 C -0.181 4.181 19 C 0.070 3.930 20 H 0.062 0.938 21 N -0.369 5.369 22 C -0.359 4.359 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.190 1.190 28 H -0.224 1.224 29 H -0.227 1.227 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.138 0.862 47 H 0.099 0.901 48 H 0.128 0.872 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.883 20.700 -11.511 25.664 hybrid contribution 0.759 -1.262 0.863 1.707 sum -9.124 19.438 -10.648 23.968 Atomic orbital electron populations 1.21767 0.94982 1.01880 1.01574 1.21363 0.95991 0.95352 1.01889 1.21598 0.95980 0.96293 0.97051 0.92673 1.21573 0.99051 0.82126 0.96891 1.48250 1.09159 1.06355 1.70140 1.21628 0.86946 0.87561 0.75276 1.90633 1.16607 1.87063 1.51586 1.21545 0.91672 0.84398 1.06223 1.47087 1.38963 1.38444 1.06943 1.21742 0.97618 0.95520 0.86933 1.21892 1.00039 0.95320 0.99228 1.21669 0.97476 1.03285 0.93402 1.21676 0.96426 0.97827 1.00789 1.20966 0.83266 0.84110 0.81654 1.90685 1.53585 1.55353 1.48996 1.21945 0.78434 1.02889 0.97724 1.22458 1.01533 0.97440 0.96693 1.20404 0.92172 0.91588 0.88872 0.93828 1.42572 1.15460 1.64998 1.13851 1.19609 0.92492 1.25526 0.98240 0.90531 1.25454 1.01468 1.03262 0.96636 1.69821 1.36929 1.50189 1.05198 0.85179 0.80386 0.77321 0.77536 1.18961 1.22402 1.22682 0.93405 0.92174 0.92088 0.93221 0.92014 0.90902 0.90026 0.84169 0.86635 0.92803 0.88320 0.87494 0.89504 0.92521 0.87829 0.88672 0.86162 0.90117 0.87195 0.91132 0.92922 0.79725 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.67 71.98 0.70 -3.36 16 2 C -0.11 -3.57 5.31 30.60 0.16 -3.40 16 3 C -0.09 -2.92 1.92 -10.72 -0.02 -2.94 16 4 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 5 C 0.13 3.74 5.33 86.37 0.46 4.20 16 6 N -0.61 -16.61 2.97 -818.91 -2.43 -19.05 16 7 C 0.50 14.32 7.75 87.66 0.68 15.00 16 8 O -0.58 -20.89 15.84 -3.04 -0.05 -20.93 16 9 C 0.09 1.86 4.03 85.63 0.35 2.21 16 10 N -0.58 -12.04 2.30 -831.03 -1.91 -13.95 16 11 C 0.10 1.43 6.39 86.50 0.55 1.98 16 12 C -0.13 -1.01 6.02 30.68 0.18 -0.82 16 13 C -0.12 -1.22 6.04 30.73 0.19 -1.03 16 14 C -0.13 -1.90 6.03 29.71 0.18 -1.72 16 15 C 0.51 12.22 7.45 87.71 0.65 12.88 16 16 O -0.60 -19.92 16.21 -3.02 -0.05 -19.97 16 17 C 0.11 2.61 6.34 86.36 0.55 3.16 16 18 C -0.14 -4.30 5.66 30.67 0.17 -4.13 16 19 C 0.18 6.54 2.19 45.02 0.10 6.64 16 20 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 21 N -0.73 -34.74 4.33 -322.81 -1.40 -36.14 16 22 C -0.23 -11.96 9.93 84.03 0.83 -11.12 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 25 N -0.97 -58.29 13.06 21.65 0.28 -58.00 16 26 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.56 6.70 -2.39 -0.02 1.54 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.99 7.22 -2.39 -0.02 1.98 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 2.58 5.72 -2.39 -0.01 2.57 16 37 H 0.14 1.97 7.41 -2.39 -0.02 1.95 16 38 H 0.12 2.48 7.00 -2.39 -0.02 2.47 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.93 7.92 -2.39 -0.02 0.91 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.50 8.13 -2.39 -0.02 0.49 16 43 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 44 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.11 1.83 5.93 -2.39 -0.01 1.82 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.37 19.48 7.51 -92.71 -0.70 18.78 16 52 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.02 402.87 2.87 -73.15 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.21 Total: 33.87 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.20 Total: 13.74 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -5.46 Total: -127.13 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.02 2.87 -73.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037879409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.775 kcal (2) G-P(sol) polarization free energy of solvation -76.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds