Wall clock time and date at job start Tue Mar 31 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 H 1.09002 * 109.49827 * 304.93143 * 3 2 1 5 5 C 1.53199 * 109.49798 * 64.99678 * 3 2 1 6 6 N 1.46921 * 108.77444 * 174.58860 * 5 3 2 7 7 C 1.34777 * 120.63078 * 126.36561 * 6 5 3 8 8 O 1.21280 * 120.00222 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00128 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47290 * 180.02562 * 9 7 6 11 11 N 1.46500 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.46766 * 124.34898 * 270.02565 * 11 10 9 13 13 C 1.54480 * 105.47221 * 162.98294 * 12 11 10 14 14 C 1.54627 * 101.76536 * 25.41761 * 13 12 11 15 15 C 1.34413 * 124.34944 * 90.02751 * 11 10 9 16 16 O 1.21279 * 124.94390 * 0.66828 * 15 11 10 17 17 C 1.46928 * 118.74110 * 306.63932 * 6 5 3 18 18 C 1.52765 * 109.00587 * 53.31043 * 17 6 5 19 19 C 1.53039 * 109.49894 * 184.83461 * 3 2 1 20 20 H 1.09001 * 109.46104 * 298.70264 * 19 3 2 21 21 N 1.46495 * 109.45911 * 58.66105 * 19 3 2 22 22 C 1.36945 * 119.99895 * 204.99971 * 21 19 3 23 23 H 1.07995 * 119.99959 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99716 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99979 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46861 * 90.00177 * 26 24 22 28 28 H 1.48503 * 109.46741 * 210.00150 * 26 24 22 29 29 H 1.48502 * 109.46751 * 329.99558 * 26 24 22 30 30 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47885 * 300.00653 * 1 2 3 32 32 H 1.09007 * 109.46842 * 60.00521 * 1 2 3 33 33 H 1.08997 * 109.47366 * 239.99912 * 2 1 3 34 34 H 1.09007 * 109.46842 * 119.99479 * 2 1 3 35 35 H 1.08997 * 109.58734 * 54.80066 * 5 3 2 36 36 H 1.09007 * 109.69944 * 294.44277 * 5 3 2 37 37 H 1.09009 * 109.46523 * 60.00548 * 9 7 6 38 38 H 1.08999 * 109.47447 * 300.00579 * 9 7 6 39 39 H 1.08996 * 109.46757 * 60.00701 * 10 9 7 40 40 H 1.08999 * 109.47254 * 300.00582 * 10 9 7 41 41 H 1.09003 * 110.24225 * 43.98865 * 12 11 10 42 42 H 1.08997 * 110.24733 * 281.98275 * 12 11 10 43 43 H 1.09003 * 110.97169 * 267.30075 * 13 12 11 44 44 H 1.08999 * 110.97225 * 143.53690 * 13 12 11 45 45 H 1.09004 * 110.48832 * 216.52571 * 14 13 12 46 46 H 1.08997 * 110.48725 * 93.87473 * 14 13 12 47 47 H 1.08998 * 109.58886 * 173.14153 * 17 6 5 48 48 H 1.08998 * 109.58753 * 293.57602 * 17 6 5 49 49 H 1.09001 * 109.56607 * 185.55267 * 18 17 6 50 50 H 1.09007 * 109.38468 * 65.51857 * 18 17 6 51 51 H 0.97004 * 120.00212 * 25.00514 * 21 19 3 52 52 H 0.97004 * 119.99961 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 -0.8424 5 6 1.6349 2.1280 1.3088 6 7 2.2414 3.4656 1.3493 7 6 1.4813 4.5580 1.5627 8 8 0.2849 4.4423 1.7239 9 6 2.1183 5.9232 1.6020 10 6 1.0426 6.9808 1.8579 11 7 1.6618 8.3080 1.8955 12 6 2.1842 8.9439 3.1108 13 6 3.1033 10.0832 2.6172 14 6 2.5061 10.3889 1.2240 15 6 1.8244 9.0997 0.8216 16 8 1.4714 8.8231 -0.3052 17 6 3.6913 3.5904 1.1467 18 6 4.0741 2.8880 -0.1547 19 6 3.5655 1.4449 -0.1216 20 1 3.9988 0.9268 0.7339 21 7 3.9578 0.7607 -1.3561 22 6 5.1963 0.1848 -1.4559 23 1 5.8839 0.2355 -0.6247 24 6 5.5681 -0.4630 -2.6260 25 7 4.7306 -0.5234 -3.6395 26 14 7.2572 -1.2491 -2.7619 27 1 7.1862 -2.6580 -2.2980 28 1 7.7062 -1.2159 -4.1770 29 1 8.2219 -0.4982 -1.9188 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9906 1.5398 2.1547 36 1 0.5496 2.2173 1.3563 37 1 2.6062 6.1241 0.6481 38 1 2.8576 5.9564 2.4023 39 1 0.5552 6.7797 2.8119 40 1 0.3031 6.9478 1.0579 41 1 2.7565 8.2246 3.6966 42 1 1.3660 9.3501 3.7054 43 1 4.1355 9.7430 2.5330 44 1 3.0328 10.9524 3.2711 45 1 3.2967 10.6393 0.5166 46 1 1.7806 11.1997 1.2896 47 1 3.9622 4.6444 1.0848 48 1 4.2180 3.1239 1.9791 49 1 5.1585 2.8891 -0.2648 50 1 3.6224 3.4137 -0.9960 51 1 3.3403 0.7156 -2.1029 52 1 4.9906 -0.9758 -4.4573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037974490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:59 Heat of formation + Delta-G solvation = -90.851794 kcal Electronic energy + Delta-G solvation = -30167.370432 eV Core-core repulsion = 26165.498685 eV Total energy + Delta-G solvation = -4001.871747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60930 -41.10678 -39.23007 -37.49747 -36.21410 -35.41376 -34.71864 -33.47099 -31.35786 -31.09703 -29.78945 -28.43264 -26.91675 -25.57329 -24.82840 -24.08962 -22.69059 -22.22899 -21.22127 -20.40348 -20.05218 -19.05758 -18.46477 -17.63377 -17.22340 -17.03146 -16.83055 -16.68142 -16.14592 -15.65833 -15.56630 -15.19464 -14.96341 -14.76253 -14.72140 -14.59681 -14.42269 -14.20724 -14.09309 -13.75814 -13.57981 -13.37037 -13.21660 -13.10857 -12.91116 -12.83684 -12.66933 -12.56108 -12.34969 -12.16778 -12.15242 -12.07064 -11.84907 -11.79566 -11.59748 -11.53605 -11.10858 -11.02149 -10.86822 -10.76098 -9.76772 -9.68316 -8.97088 -7.91327 -5.19259 1.47856 1.49096 1.50455 1.54523 1.57185 1.82501 2.20155 2.57615 3.41570 3.45024 3.51781 3.67854 3.74813 3.78378 3.88699 3.97519 4.00232 4.06301 4.10887 4.22440 4.27897 4.32489 4.38170 4.44031 4.45784 4.62117 4.64850 4.69878 4.74071 4.76369 4.79158 4.82329 4.88363 4.89665 4.93021 5.00056 5.04285 5.13953 5.14648 5.27479 5.27748 5.36122 5.45315 5.50704 5.55017 5.57135 5.64632 6.14487 6.29558 6.37959 7.07471 7.14241 7.35944 8.12145 8.35310 9.32387 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002602 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.838708 B =10759.261516 C =12056.845929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.045 0.955 5 C 0.126 3.874 6 N -0.607 5.607 7 C 0.516 3.484 8 O -0.583 6.583 9 C -0.145 4.145 10 C 0.145 3.855 11 N -0.618 5.618 12 C 0.092 3.908 13 C -0.119 4.119 14 C -0.150 4.150 15 C 0.496 3.504 16 O -0.593 6.593 17 C 0.116 3.884 18 C -0.146 4.146 19 C 0.180 3.820 20 H 0.052 0.948 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.973 5.973 26 Si 0.969 3.031 27 H -0.290 1.290 28 H -0.302 1.302 29 H -0.266 1.266 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.037 0.963 51 H 0.369 0.631 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 20.620 21.311 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.339 5.339 7 C 0.306 3.694 8 O -0.463 6.463 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.351 5.351 12 C -0.029 4.029 13 C -0.157 4.157 14 C -0.190 4.190 15 C 0.286 3.714 16 O -0.474 6.474 17 C -0.007 4.007 18 C -0.187 4.187 19 C 0.071 3.929 20 H 0.070 0.930 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.624 5.624 26 Si 0.798 3.202 27 H -0.217 1.217 28 H -0.229 1.229 29 H -0.191 1.191 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.122 0.878 48 H 0.111 0.889 49 H 0.087 0.913 50 H 0.056 0.944 51 H 0.200 0.800 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.691 20.293 20.911 29.372 hybrid contribution 0.491 -0.999 -1.570 1.924 sum -3.200 19.295 19.341 27.506 Atomic orbital electron populations 1.21778 0.94994 1.01916 1.01606 1.21349 0.95966 0.95145 1.01992 1.21640 0.95943 0.96501 0.97359 0.93693 1.21630 0.99299 0.82010 0.96780 1.48256 1.09144 1.06558 1.69913 1.20903 0.86439 0.86834 0.75250 1.90667 1.16274 1.87237 1.52170 1.21988 1.00687 0.90297 1.05551 1.20924 0.93566 0.79743 1.03588 1.48517 1.59711 1.16530 1.10344 1.22481 0.98465 0.96163 0.85798 1.22658 0.99452 0.99202 0.94364 1.22390 1.01969 0.94404 1.00265 1.21935 0.78022 0.87753 0.83720 1.90726 1.54249 1.78851 1.23593 1.21821 0.78713 1.02589 0.97558 1.22429 1.01391 0.97857 0.97004 1.20416 0.92216 0.91202 0.89044 0.92995 1.42618 1.15560 1.64968 1.13948 1.19609 0.92541 1.25565 0.98339 0.90230 1.25521 1.01699 1.03316 0.96548 1.69833 1.37248 1.50156 1.05152 0.85200 0.80330 0.78404 0.76218 1.21692 1.22896 1.19074 0.92000 0.91620 0.93974 0.93636 0.91372 0.89645 0.89678 0.89431 0.85055 0.87987 0.92858 0.88230 0.89361 0.89041 0.86239 0.87706 0.86445 0.87795 0.88866 0.91253 0.94437 0.79977 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.67 71.98 0.70 -3.39 16 2 C -0.11 -3.51 5.31 30.59 0.16 -3.35 16 3 C -0.09 -3.14 1.93 -10.72 -0.02 -3.16 16 4 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 5 C 0.13 3.47 5.32 86.37 0.46 3.93 16 6 N -0.61 -15.63 2.98 -819.72 -2.44 -18.07 16 7 C 0.52 13.65 7.70 87.66 0.67 14.32 16 8 O -0.58 -19.30 15.39 -3.03 -0.05 -19.35 16 9 C -0.14 -2.78 4.37 29.85 0.13 -2.65 16 10 C 0.14 2.92 5.22 86.38 0.45 3.37 16 11 N -0.62 -10.03 2.93 -817.99 -2.40 -12.43 16 12 C 0.09 0.55 7.35 86.83 0.64 1.19 16 13 C -0.12 -0.38 7.18 31.65 0.23 -0.16 16 14 C -0.15 -1.54 6.86 30.59 0.21 -1.33 16 15 C 0.50 10.68 8.02 87.90 0.71 11.38 16 16 O -0.59 -19.96 17.59 -3.03 -0.05 -20.02 16 17 C 0.12 2.60 6.31 86.22 0.54 3.14 16 18 C -0.15 -4.73 5.64 30.53 0.17 -4.56 16 19 C 0.18 6.69 2.19 45.02 0.10 6.79 16 20 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 21 N -0.73 -35.87 4.33 -322.82 -1.40 -37.27 16 22 C -0.23 -12.24 9.93 84.03 0.83 -11.41 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 25 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 26 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.63 6.70 -2.39 -0.02 1.62 16 32 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.04 1.86 7.22 -2.39 -0.02 1.84 16 34 H 0.07 2.07 8.14 -2.38 -0.02 2.06 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.50 5.73 -2.38 -0.01 2.49 16 37 H 0.09 1.94 7.68 -2.38 -0.02 1.92 16 38 H 0.13 1.55 7.95 -2.39 -0.02 1.53 16 39 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.05 1.48 7.88 -2.39 -0.02 1.46 16 41 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 1.81 5.93 -2.39 -0.01 1.80 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 51 H 0.37 20.16 7.51 -92.70 -0.70 19.46 16 52 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -78.97 408.58 2.63 -76.34 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.20 Total: 32.57 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.45 Total: 10.10 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -5.96 Total: -127.39 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.10 Total: -39.37 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.97 2.63 -76.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.509 kcal (2) G-P(sol) polarization free energy of solvation -78.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds