Wall clock time and date at job start Tue Mar 31 2020 20:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.09001 * 109.52290 * 54.91519 * 3 2 1 5 5 C 1.53194 * 109.49492 * 294.83467 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.41415 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 C 1.53003 * 109.47058 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47446 * 179.97438 * 10 9 7 12 12 C 1.46762 * 124.34840 * 89.99680 * 11 10 9 13 13 C 1.54480 * 105.47510 * 197.01706 * 12 11 10 14 14 C 1.54630 * 101.76490 * 334.58688 * 13 12 11 15 15 C 1.34414 * 124.35088 * 269.70336 * 11 10 9 16 16 O 1.21285 * 124.94352 * 359.56583 * 15 11 10 17 17 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 18 18 C 1.53185 * 108.77524 * 306.39104 * 17 6 5 19 19 C 1.53038 * 109.49548 * 175.00150 * 3 2 1 20 20 H 1.08999 * 109.45649 * 301.32867 * 19 3 2 21 21 N 1.46495 * 109.46163 * 61.29682 * 19 3 2 22 22 C 1.36944 * 119.99717 * 205.06709 * 21 19 3 23 23 H 1.08001 * 119.99982 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99812 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00085 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99931 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46810 * 90.00225 * 26 24 22 28 28 H 1.48498 * 109.46959 * 210.00029 * 26 24 22 29 29 H 1.48497 * 109.47412 * 329.99891 * 26 24 22 30 30 H 1.09003 * 109.47109 * 60.00630 * 1 2 3 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46902 * 299.99964 * 1 2 3 33 33 H 1.08999 * 109.46902 * 240.00036 * 2 1 3 34 34 H 1.08996 * 109.47320 * 119.99686 * 2 1 3 35 35 H 1.09004 * 109.58535 * 65.62755 * 5 3 2 36 36 H 1.08994 * 109.59149 * 305.20232 * 5 3 2 37 37 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 38 38 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 39 39 H 1.09003 * 109.46906 * 300.00171 * 10 9 7 40 40 H 1.09002 * 109.47351 * 59.99533 * 10 9 7 41 41 H 1.09004 * 110.25024 * 316.02293 * 12 11 10 42 42 H 1.08998 * 110.24366 * 77.93058 * 12 11 10 43 43 H 1.09005 * 110.96469 * 92.70289 * 13 12 11 44 44 H 1.08999 * 110.97504 * 216.42691 * 13 12 11 45 45 H 1.08999 * 110.48360 * 143.46986 * 14 13 12 46 46 H 1.08996 * 110.48501 * 266.11711 * 14 13 12 47 47 H 1.09001 * 109.58178 * 66.18066 * 17 6 5 48 48 H 1.08998 * 109.58625 * 186.46082 * 17 6 5 49 49 H 1.08998 * 109.50031 * 174.58725 * 18 17 6 50 50 H 1.09001 * 109.49616 * 294.65180 * 18 17 6 51 51 H 0.97001 * 120.00349 * 25.06336 * 21 19 3 52 52 H 0.96995 * 120.00064 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4643 -1.3508 7 6 1.4849 4.5570 -1.5624 8 8 0.2889 4.4410 -1.7268 9 6 2.1210 5.9227 -1.5946 10 6 1.0452 6.9806 -1.8485 11 7 1.6634 8.3083 -1.8793 12 6 2.1876 8.9499 -3.0907 13 6 3.1050 10.0877 -2.5906 14 6 2.5051 10.3870 -1.1972 15 6 1.8184 9.0979 -0.8026 16 8 1.4619 8.8169 0.3221 17 6 3.6953 3.5888 -1.1499 18 6 4.0736 2.8882 0.1588 19 6 3.5652 1.4450 0.1257 20 1 3.8546 0.9370 1.0456 21 7 4.1507 0.7476 -1.0218 22 6 5.3880 0.1706 -0.9140 23 1 5.9323 0.2302 0.0169 24 6 5.9425 -0.4907 -2.0012 25 7 7.1316 -1.0457 -1.8974 26 14 5.0007 -0.5944 -3.6110 27 1 5.3448 0.5732 -4.4618 28 1 5.3666 -1.8475 -4.3187 29 1 3.5421 -0.5911 -3.3324 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5533 2.2160 -1.3586 36 1 1.9965 1.5377 -2.1549 37 1 2.6058 6.1204 -0.6386 38 1 2.8626 5.9594 -2.3925 39 1 0.5599 6.7831 -2.8044 40 1 0.3038 6.9438 -1.0503 41 1 2.7614 8.2336 -3.6788 42 1 1.3701 9.3567 -3.6859 43 1 4.1372 9.7478 -2.5060 44 1 3.0355 10.9594 -3.2412 45 1 3.2942 10.6348 -0.4874 46 1 1.7792 11.1976 -1.2605 47 1 4.2209 3.1189 -1.9812 48 1 3.9673 4.6428 -1.0945 49 1 5.1577 2.8895 0.2719 50 1 3.6197 3.4152 0.9980 51 1 3.6620 0.6943 -1.8580 52 1 7.5189 -1.5081 -2.6569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:03 Heat of formation + Delta-G solvation = -63.334636 kcal Electronic energy + Delta-G solvation = -30690.123481 eV Core-core repulsion = 26689.444967 eV Total energy + Delta-G solvation = -4000.678514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74555 -40.12406 -38.07244 -36.66807 -34.60311 -34.11874 -33.80139 -31.79427 -30.49735 -29.85905 -28.67046 -27.90927 -25.71859 -24.15665 -23.63507 -23.10892 -22.24693 -20.88339 -19.79818 -19.47557 -18.28983 -17.94590 -17.39203 -16.95230 -16.27643 -16.00604 -15.81103 -15.31008 -14.81980 -14.47763 -14.24424 -14.08227 -14.03740 -13.81214 -13.61504 -13.51591 -13.36746 -13.13403 -13.00313 -12.72637 -12.48392 -12.45537 -12.40646 -11.91000 -11.85716 -11.61974 -11.43804 -11.32599 -11.27368 -11.13234 -10.96901 -10.84864 -10.40251 -10.34980 -10.24435 -10.05470 -9.85139 -9.72231 -9.58792 -9.03508 -8.98531 -8.39121 -7.31972 -5.82445 -3.17761 2.30775 2.61909 2.68588 3.21769 3.30278 3.33138 3.40130 3.99853 4.08127 4.40208 4.52647 4.56621 4.65921 4.71789 4.80985 4.99149 5.08636 5.09525 5.12073 5.20152 5.25544 5.29257 5.31830 5.37736 5.41446 5.49524 5.54175 5.55546 5.56049 5.63746 5.65090 5.73959 5.76596 5.87457 6.01591 6.04662 6.18439 6.22806 6.26094 6.30502 6.43206 6.49639 6.54844 6.65282 6.75121 6.83463 6.87183 7.55534 7.90176 7.94149 8.23448 8.36734 9.14890 9.87464 10.07445 11.36008 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.003019 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.875044 B = 9272.330885 C =10253.401615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.072 0.928 5 C 0.117 3.883 6 N -0.603 5.603 7 C 0.519 3.481 8 O -0.554 6.554 9 C -0.156 4.156 10 C 0.143 3.857 11 N -0.621 5.621 12 C 0.099 3.901 13 C -0.132 4.132 14 C -0.156 4.156 15 C 0.514 3.486 16 O -0.530 6.530 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.185 3.815 20 H 0.060 0.940 21 N -0.743 5.743 22 C -0.240 4.240 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.053 0.947 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 20.233 -2.043 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.335 5.335 7 C 0.306 3.694 8 O -0.433 6.433 9 C -0.197 4.197 10 C 0.021 3.979 11 N -0.355 5.355 12 C -0.024 4.024 13 C -0.170 4.170 14 C -0.196 4.196 15 C 0.301 3.699 16 O -0.406 6.406 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.075 3.925 20 H 0.078 0.922 21 N -0.387 5.387 22 C -0.370 4.370 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.708 3.292 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.692 19.843 -1.464 22.587 hybrid contribution -0.254 -0.250 -1.347 1.394 sum -10.946 19.592 -2.811 22.618 Atomic orbital electron populations 1.21858 0.96609 1.01163 1.01486 1.21434 0.94502 0.95679 1.03305 1.21805 0.97414 0.96241 0.97228 0.90974 1.21683 0.99127 0.81725 0.97974 1.48179 1.08818 1.06541 1.69975 1.20357 0.86794 0.85915 0.76315 1.90670 1.14866 1.86815 1.50933 1.22030 1.00347 0.92537 1.04819 1.21089 0.93995 0.78546 1.04294 1.48360 1.60626 1.17267 1.09242 1.22129 0.97484 0.95398 0.87411 1.22605 0.99734 0.98716 0.95957 1.22340 1.01814 0.96815 0.98611 1.20984 0.78548 0.86071 0.84261 1.90753 1.51549 1.77172 1.21112 1.21762 0.78937 1.00414 0.99968 1.22499 1.02340 0.98788 0.95480 1.20185 0.89417 0.90674 0.92231 0.92173 1.42844 1.19690 1.65767 1.10420 1.19061 0.91883 1.26823 0.99212 0.89161 1.24636 0.96461 1.00289 0.97535 1.69689 1.16329 1.41198 1.30884 0.86665 0.79620 0.77450 0.85423 1.21206 1.21728 1.20395 0.92876 0.93046 0.93101 0.91121 0.91519 0.89226 0.91643 0.88471 0.88723 0.89463 0.89099 0.90117 0.90892 0.89763 0.89091 0.87944 0.87895 0.90192 0.90880 0.90164 0.92851 0.80616 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.68 5.19 -26.73 -0.14 -1.82 16 3 C -0.11 -1.65 2.14 -90.50 -0.19 -1.85 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.85 5.03 -3.71 -0.02 1.83 16 6 N -0.60 -9.03 2.97 -172.77 -0.51 -9.55 16 7 C 0.52 7.58 7.70 -10.98 -0.08 7.49 16 8 O -0.55 -9.56 15.39 5.56 0.09 -9.48 16 9 C -0.16 -1.76 4.37 -27.88 -0.12 -1.88 16 10 C 0.14 1.55 5.23 -4.04 -0.02 1.53 16 11 N -0.62 -5.75 2.93 -172.41 -0.51 -6.25 16 12 C 0.10 0.55 7.35 -3.12 -0.02 0.53 16 13 C -0.13 -0.54 7.18 -25.10 -0.18 -0.72 16 14 C -0.16 -0.98 6.86 -26.74 -0.18 -1.16 16 15 C 0.51 5.60 8.02 -10.86 -0.09 5.52 16 16 O -0.53 -8.24 17.58 5.55 0.10 -8.15 16 17 C 0.11 1.62 6.09 -3.71 -0.02 1.60 16 18 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 19 C 0.18 3.27 2.53 -67.89 -0.17 3.09 16 20 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 21 N -0.74 -15.93 3.52 -53.39 -0.19 -16.12 16 22 C -0.24 -6.28 10.41 -15.06 -0.16 -6.44 16 23 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 26 Si 0.88 21.28 27.73 -169.99 -4.71 16.57 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.43 5.73 -51.93 -0.30 1.13 16 36 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 37 H 0.10 1.13 7.70 -51.93 -0.40 0.73 16 38 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 48 H 0.07 0.87 5.93 -51.93 -0.31 0.57 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.36 7.77 3.81 -40.82 -0.16 7.61 16 52 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -33.53 401.88 -9.18 -42.71 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.98 Total: 8.07 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.29 Total: 3.67 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.43 Total: -59.45 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.53 -9.18 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.629 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds