Wall clock time and date at job start Tue Mar 31 2020 20:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.09001 * 109.52290 * 54.91519 * 3 2 1 5 5 C 1.53194 * 109.49492 * 294.83467 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.41415 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 C 1.53003 * 109.47058 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47446 * 179.97438 * 10 9 7 12 12 C 1.46762 * 124.34840 * 89.99680 * 11 10 9 13 13 C 1.54480 * 105.47510 * 197.01706 * 12 11 10 14 14 C 1.54630 * 101.76490 * 334.58688 * 13 12 11 15 15 C 1.34414 * 124.35088 * 269.70336 * 11 10 9 16 16 O 1.21285 * 124.94352 * 359.56583 * 15 11 10 17 17 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 18 18 C 1.53185 * 108.77524 * 306.39104 * 17 6 5 19 19 C 1.53038 * 109.49548 * 175.00150 * 3 2 1 20 20 H 1.08999 * 109.45649 * 301.32867 * 19 3 2 21 21 N 1.46495 * 109.46163 * 61.29682 * 19 3 2 22 22 C 1.36944 * 119.99717 * 205.06709 * 21 19 3 23 23 H 1.08001 * 119.99982 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99812 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00085 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99931 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46810 * 90.00225 * 26 24 22 28 28 H 1.48498 * 109.46959 * 210.00029 * 26 24 22 29 29 H 1.48497 * 109.47412 * 329.99891 * 26 24 22 30 30 H 1.09003 * 109.47109 * 60.00630 * 1 2 3 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46902 * 299.99964 * 1 2 3 33 33 H 1.08999 * 109.46902 * 240.00036 * 2 1 3 34 34 H 1.08996 * 109.47320 * 119.99686 * 2 1 3 35 35 H 1.09004 * 109.58535 * 65.62755 * 5 3 2 36 36 H 1.08994 * 109.59149 * 305.20232 * 5 3 2 37 37 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 38 38 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 39 39 H 1.09003 * 109.46906 * 300.00171 * 10 9 7 40 40 H 1.09002 * 109.47351 * 59.99533 * 10 9 7 41 41 H 1.09004 * 110.25024 * 316.02293 * 12 11 10 42 42 H 1.08998 * 110.24366 * 77.93058 * 12 11 10 43 43 H 1.09005 * 110.96469 * 92.70289 * 13 12 11 44 44 H 1.08999 * 110.97504 * 216.42691 * 13 12 11 45 45 H 1.08999 * 110.48360 * 143.46986 * 14 13 12 46 46 H 1.08996 * 110.48501 * 266.11711 * 14 13 12 47 47 H 1.09001 * 109.58178 * 66.18066 * 17 6 5 48 48 H 1.08998 * 109.58625 * 186.46082 * 17 6 5 49 49 H 1.08998 * 109.50031 * 174.58725 * 18 17 6 50 50 H 1.09001 * 109.49616 * 294.65180 * 18 17 6 51 51 H 0.97001 * 120.00349 * 25.06336 * 21 19 3 52 52 H 0.96995 * 120.00064 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4643 -1.3508 7 6 1.4849 4.5570 -1.5624 8 8 0.2889 4.4410 -1.7268 9 6 2.1210 5.9227 -1.5946 10 6 1.0452 6.9806 -1.8485 11 7 1.6634 8.3083 -1.8793 12 6 2.1876 8.9499 -3.0907 13 6 3.1050 10.0877 -2.5906 14 6 2.5051 10.3870 -1.1972 15 6 1.8184 9.0979 -0.8026 16 8 1.4619 8.8169 0.3221 17 6 3.6953 3.5888 -1.1499 18 6 4.0736 2.8882 0.1588 19 6 3.5652 1.4450 0.1257 20 1 3.8546 0.9370 1.0456 21 7 4.1507 0.7476 -1.0218 22 6 5.3880 0.1706 -0.9140 23 1 5.9323 0.2302 0.0169 24 6 5.9425 -0.4907 -2.0012 25 7 7.1316 -1.0457 -1.8974 26 14 5.0007 -0.5944 -3.6110 27 1 5.3448 0.5732 -4.4618 28 1 5.3666 -1.8475 -4.3187 29 1 3.5421 -0.5911 -3.3324 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5533 2.2160 -1.3586 36 1 1.9965 1.5377 -2.1549 37 1 2.6058 6.1204 -0.6386 38 1 2.8626 5.9594 -2.3925 39 1 0.5599 6.7831 -2.8044 40 1 0.3038 6.9438 -1.0503 41 1 2.7614 8.2336 -3.6788 42 1 1.3701 9.3567 -3.6859 43 1 4.1372 9.7478 -2.5060 44 1 3.0355 10.9594 -3.2412 45 1 3.2942 10.6348 -0.4874 46 1 1.7792 11.1976 -1.2605 47 1 4.2209 3.1189 -1.9812 48 1 3.9673 4.6428 -1.0945 49 1 5.1577 2.8895 0.2719 50 1 3.6197 3.4152 0.9980 51 1 3.6620 0.6943 -1.8580 52 1 7.5189 -1.5081 -2.6569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037974491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:02 Heat of formation + Delta-G solvation = -84.338630 kcal Electronic energy + Delta-G solvation = -30691.034283 eV Core-core repulsion = 26689.444967 eV Total energy + Delta-G solvation = -4001.589315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66611 -41.16633 -39.39528 -37.48893 -36.00072 -35.47624 -34.74096 -33.58338 -31.49420 -31.34359 -29.87485 -28.44138 -26.92551 -25.46038 -24.99895 -24.55764 -22.70761 -22.18518 -20.93109 -20.35509 -19.89378 -19.59113 -18.45434 -17.63425 -17.19118 -17.05748 -16.93860 -16.51848 -16.20721 -15.97127 -15.60197 -15.16495 -15.01282 -14.93814 -14.72412 -14.55636 -14.43198 -14.24834 -14.11314 -14.00044 -13.72429 -13.42683 -13.24970 -13.20374 -12.96867 -12.85989 -12.69934 -12.49988 -12.36314 -12.19830 -12.14908 -12.02884 -11.88360 -11.80505 -11.64516 -11.55253 -11.20823 -11.02304 -10.88091 -10.79020 -9.77923 -9.68392 -9.24895 -7.98483 -5.29859 1.36489 1.38005 1.45410 1.50567 1.52699 1.80238 2.17959 2.48989 3.33276 3.44275 3.48910 3.58691 3.66729 3.73071 3.86376 3.91438 3.96270 3.98145 4.09341 4.19799 4.25714 4.26783 4.34560 4.40825 4.42722 4.52996 4.62143 4.63846 4.68315 4.74954 4.77203 4.83797 4.87633 4.92223 4.93846 4.99745 5.11917 5.13297 5.15637 5.19970 5.24188 5.25932 5.34728 5.44863 5.52916 5.60040 5.83401 6.13797 6.25261 6.37235 7.05069 7.11778 7.13256 7.87957 8.07068 9.23432 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.003019 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.875044 B = 9272.330885 C =10253.401615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.096 4.096 4 H 0.085 0.915 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.518 3.482 8 O -0.581 6.581 9 C -0.145 4.145 10 C 0.146 3.854 11 N -0.619 5.619 12 C 0.091 3.909 13 C -0.120 4.120 14 C -0.149 4.149 15 C 0.499 3.501 16 O -0.589 6.589 17 C 0.117 3.883 18 C -0.144 4.144 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.740 5.740 22 C -0.213 4.213 23 H 0.060 0.940 24 C -0.059 4.059 25 N -0.985 5.985 26 Si 0.940 3.060 27 H -0.278 1.278 28 H -0.301 1.301 29 H -0.257 1.257 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 22.679 -3.506 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.116 4.116 4 H 0.103 0.897 5 C -0.003 4.003 6 N -0.336 5.336 7 C 0.307 3.693 8 O -0.462 6.462 9 C -0.186 4.186 10 C 0.023 3.977 11 N -0.351 5.351 12 C -0.030 4.030 13 C -0.157 4.157 14 C -0.189 4.189 15 C 0.288 3.712 16 O -0.470 6.470 17 C -0.005 4.005 18 C -0.185 4.185 19 C 0.070 3.930 20 H 0.065 0.935 21 N -0.384 5.384 22 C -0.344 4.344 23 H 0.078 0.922 24 C -0.251 4.251 25 N -0.636 5.636 26 Si 0.769 3.231 27 H -0.204 1.204 28 H -0.229 1.229 29 H -0.182 1.182 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.136 0.864 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.197 0.803 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.811 22.340 -2.944 25.441 hybrid contribution 0.049 -0.982 -0.791 1.262 sum -11.762 21.358 -3.735 24.667 Atomic orbital electron populations 1.21794 0.94591 1.02071 1.01975 1.21399 0.96267 0.95061 1.02045 1.21705 0.95395 0.96750 0.97738 0.89709 1.21582 0.99180 0.82177 0.97364 1.48219 1.08942 1.06416 1.70022 1.20884 0.86423 0.86748 0.75232 1.90660 1.16187 1.87277 1.52055 1.21982 1.00608 0.90340 1.05641 1.20910 0.93536 0.79634 1.03600 1.48505 1.59772 1.16457 1.10401 1.22459 0.98455 0.96074 0.86060 1.22649 0.99368 0.99112 0.94621 1.22381 1.01944 0.94519 1.00064 1.21877 0.78012 0.87626 0.83644 1.90712 1.54131 1.78672 1.23506 1.21726 0.78488 1.02014 0.98312 1.22373 1.01539 0.97423 0.97160 1.20385 0.91009 0.91393 0.90222 0.93470 1.42772 1.18178 1.65803 1.11693 1.18988 0.92834 1.25006 0.97572 0.92186 1.25311 0.97472 1.01142 1.01139 1.69861 1.18524 1.43398 1.31806 0.85638 0.79378 0.76937 0.81177 1.20434 1.22860 1.18231 0.92848 0.92009 0.92089 0.93249 0.91887 0.89145 0.92851 0.88594 0.86138 0.88541 0.92124 0.88811 0.89381 0.89210 0.86301 0.87464 0.86388 0.91970 0.87707 0.91497 0.90873 0.80336 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.67 71.98 0.70 -2.84 16 2 C -0.11 -3.21 5.19 30.60 0.16 -3.05 16 3 C -0.10 -2.85 2.14 -10.71 -0.02 -2.87 16 4 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 3.60 5.03 86.36 0.43 4.03 16 6 N -0.60 -16.94 2.97 -818.91 -2.43 -19.38 16 7 C 0.52 14.18 7.70 87.65 0.67 14.86 16 8 O -0.58 -19.36 15.39 -3.04 -0.05 -19.41 16 9 C -0.14 -2.94 4.37 29.85 0.13 -2.81 16 10 C 0.15 2.99 5.23 86.38 0.45 3.44 16 11 N -0.62 -10.26 2.93 -817.98 -2.40 -12.65 16 12 C 0.09 0.68 7.35 86.83 0.64 1.32 16 13 C -0.12 -0.51 7.18 31.65 0.23 -0.28 16 14 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 15 C 0.50 10.35 8.02 87.90 0.71 11.06 16 16 O -0.59 -18.66 17.58 -3.04 -0.05 -18.71 16 17 C 0.12 3.16 6.09 86.36 0.53 3.68 16 18 C -0.14 -4.34 5.78 30.67 0.18 -4.16 16 19 C 0.18 6.19 2.53 45.02 0.11 6.31 16 20 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 21 N -0.74 -31.51 3.52 -322.81 -1.14 -32.65 16 22 C -0.21 -11.32 10.41 84.03 0.87 -10.44 16 23 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 24 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 25 N -0.98 -61.39 13.97 21.65 0.30 -61.09 16 26 Si 0.94 44.15 27.73 68.60 1.90 46.06 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 29 H -0.26 -11.05 6.52 99.48 0.65 -10.40 16 30 H 0.05 1.28 6.70 -2.39 -0.02 1.27 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.65 7.70 -2.39 -0.02 1.64 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.74 5.73 -2.38 -0.01 2.73 16 36 H 0.05 1.74 6.64 -2.39 -0.02 1.72 16 37 H 0.10 2.03 7.70 -2.39 -0.02 2.01 16 38 H 0.12 1.84 7.94 -2.39 -0.02 1.82 16 39 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.06 1.61 7.87 -2.39 -0.02 1.59 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 1.94 7.74 -2.39 -0.02 1.93 16 48 H 0.10 2.18 5.93 -2.39 -0.01 2.16 16 49 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.36 15.27 3.81 -92.71 -0.35 14.91 16 52 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.91 401.88 3.09 -72.82 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.49 Total: 30.93 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 6.46 Total: 14.08 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -5.67 Total: -125.76 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.10 Total: -38.12 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.06 kcal Total: -75.91 3.09 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.520 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds