Wall clock time and date at job start Tue Mar 31 2020 20:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46717 * 2 1 4 4 H 1.09006 * 109.52632 * 305.07569 * 3 2 1 5 5 C 1.53624 * 109.43497 * 65.29066 * 3 2 1 6 6 N 1.46926 * 108.54251 * 174.72840 * 5 3 2 7 7 C 1.34773 * 120.63381 * 126.36966 * 6 5 3 8 8 O 1.21283 * 120.00280 * 359.71124 * 7 6 5 9 9 C 1.50701 * 119.99914 * 179.71517 * 7 6 5 10 10 C 1.53006 * 109.46785 * 179.97438 * 9 7 6 11 11 N 1.46502 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.46769 * 124.34688 * 269.99994 * 11 10 9 13 13 C 1.54485 * 105.47030 * 197.03928 * 12 11 10 14 14 C 1.54627 * 101.76594 * 334.58477 * 13 12 11 15 15 C 1.34417 * 124.35146 * 90.03014 * 11 10 9 16 16 O 1.21279 * 124.94464 * 359.59579 * 15 11 10 17 17 C 1.46932 * 118.73582 * 306.08675 * 6 5 3 18 18 C 1.53185 * 108.77681 * 53.86489 * 17 6 5 19 19 C 1.53041 * 109.49854 * 185.00080 * 3 2 1 20 20 H 1.09003 * 109.45285 * 58.66546 * 19 3 2 21 21 N 1.46511 * 109.45860 * 298.70303 * 19 3 2 22 22 C 1.36929 * 119.99908 * 154.92944 * 21 19 3 23 23 H 1.07999 * 120.00866 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99847 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00002 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.46768 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47313 * 119.99662 * 26 24 22 29 29 H 1.48501 * 109.46649 * 239.99788 * 26 24 22 30 30 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47228 * 299.99998 * 1 2 3 32 32 H 1.08999 * 109.47061 * 60.00249 * 1 2 3 33 33 H 1.08994 * 109.47228 * 240.00002 * 2 1 3 34 34 H 1.08995 * 109.47188 * 119.99272 * 2 1 3 35 35 H 1.08989 * 109.74272 * 54.98412 * 5 3 2 36 36 H 1.09003 * 109.66189 * 294.41235 * 5 3 2 37 37 H 1.09003 * 109.47055 * 60.00012 * 9 7 6 38 38 H 1.08992 * 109.47545 * 299.99359 * 9 7 6 39 39 H 1.08994 * 109.46961 * 60.00181 * 10 9 7 40 40 H 1.08997 * 109.47044 * 299.99491 * 10 9 7 41 41 H 1.08998 * 110.24703 * 78.04283 * 12 11 10 42 42 H 1.08997 * 110.24528 * 316.03524 * 12 11 10 43 43 H 1.09000 * 110.96819 * 216.46072 * 13 12 11 44 44 H 1.08997 * 110.96657 * 92.70464 * 13 12 11 45 45 H 1.09005 * 110.48027 * 143.47533 * 14 13 12 46 46 H 1.09000 * 110.48552 * 266.11612 * 14 13 12 47 47 H 1.08994 * 109.58460 * 173.65212 * 17 6 5 48 48 H 1.09005 * 109.58506 * 294.07873 * 17 6 5 49 49 H 1.09005 * 109.49983 * 65.31135 * 18 17 6 50 50 H 1.09000 * 109.50006 * 185.38356 * 18 17 6 51 51 H 0.96998 * 119.99186 * 334.93134 * 21 19 3 52 52 H 0.96997 * 120.00082 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 -0.8408 5 6 1.6393 2.1263 1.3161 6 7 2.2449 3.4645 1.3506 7 6 1.4856 4.5565 1.5680 8 8 0.2896 4.4406 1.7324 9 6 2.1227 5.9217 1.6069 10 6 1.0476 6.9789 1.8667 11 7 1.6669 8.3061 1.9039 12 6 2.1921 8.9411 3.1184 13 6 2.3299 10.4405 2.7728 14 6 2.4908 10.3963 1.2356 15 6 1.8265 9.0989 0.8302 16 8 1.4870 8.8157 -0.2991 17 6 3.6951 3.5890 1.1497 18 6 4.0736 2.8883 -0.1589 19 6 3.5652 1.4452 -0.1258 20 1 3.8545 0.9371 -1.0457 21 7 4.1507 0.7477 1.0219 22 6 5.3879 0.1708 0.9141 23 1 5.9323 0.2303 -0.0168 24 6 5.9425 -0.4905 2.0013 25 7 5.2793 -0.5627 3.1359 26 14 7.6306 -1.2768 1.8545 27 1 8.1622 -1.0558 0.4857 28 1 8.5496 -0.6653 2.8477 29 1 7.5214 -2.7351 2.1132 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0007 1.5397 2.1606 36 1 0.5541 2.2150 1.3678 37 1 2.6073 6.1238 0.6516 38 1 2.8646 5.9539 2.4047 39 1 0.5627 6.7769 2.8217 40 1 0.3060 6.9467 1.0686 41 1 3.1655 8.5216 3.3726 42 1 1.4950 8.8072 3.9456 43 1 3.2132 10.8701 3.2453 44 1 1.4320 10.9900 3.0554 45 1 1.9845 11.2444 0.7746 46 1 3.5460 10.3862 0.9626 47 1 3.9668 4.6429 1.0917 48 1 4.2208 3.1191 1.9811 49 1 3.6192 3.4148 -0.9982 50 1 5.1577 2.8901 -0.2722 51 1 3.6619 0.6945 1.8580 52 1 5.6670 -1.0244 3.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:06 Heat of formation + Delta-G solvation = -67.584590 kcal Electronic energy + Delta-G solvation = -30528.686741 eV Core-core repulsion = 26527.823935 eV Total energy + Delta-G solvation = -4000.862806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67916 -39.97930 -37.89498 -36.62110 -34.44863 -34.04012 -33.68829 -31.70298 -30.39084 -29.39399 -28.36906 -27.86588 -25.55390 -24.03168 -23.58352 -23.36313 -22.18348 -20.79518 -19.70670 -19.36892 -18.21366 -17.46640 -17.23156 -16.88577 -16.17669 -15.98507 -15.62099 -15.28555 -14.68561 -14.34590 -14.10003 -14.00546 -13.87012 -13.81860 -13.65075 -13.37500 -13.26531 -13.07538 -12.88126 -12.58738 -12.46319 -12.36417 -12.21027 -11.86982 -11.66516 -11.43730 -11.39267 -11.20995 -11.08328 -10.98999 -10.81946 -10.72518 -10.30672 -10.25644 -10.15219 -10.01687 -9.79470 -9.59368 -9.55715 -8.97925 -8.94832 -8.22376 -6.99676 -5.81600 -3.09810 2.36471 2.67004 2.81411 3.36226 3.39091 3.45780 3.47361 4.03810 4.11160 4.43521 4.55252 4.65762 4.72930 4.80880 4.88121 5.12270 5.14073 5.18224 5.28150 5.31391 5.34073 5.35989 5.41062 5.50589 5.55472 5.57553 5.58670 5.63050 5.70787 5.80950 5.81637 5.83260 5.92655 6.09142 6.16140 6.19616 6.28408 6.35623 6.39590 6.41772 6.57100 6.63439 6.71122 6.77052 6.88536 6.94187 7.01301 7.67032 7.71194 7.94700 8.36948 8.37099 9.48782 10.05519 10.40874 11.40864 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002829 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.818884 B = 9893.610148 C =11174.060039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.517 3.483 8 O -0.556 6.556 9 C -0.156 4.156 10 C 0.143 3.857 11 N -0.620 5.620 12 C 0.098 3.902 13 C -0.132 4.132 14 C -0.156 4.156 15 C 0.514 3.486 16 O -0.530 6.530 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 19.037 -0.221 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.305 3.695 8 O -0.436 6.436 9 C -0.197 4.197 10 C 0.021 3.979 11 N -0.354 5.354 12 C -0.025 4.025 13 C -0.170 4.170 14 C -0.196 4.196 15 C 0.301 3.699 16 O -0.407 6.407 17 C -0.009 4.009 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.882 18.666 -0.779 19.910 hybrid contribution 1.156 -0.569 0.334 1.331 sum -5.726 18.097 -0.445 18.986 Atomic orbital electron populations 1.21853 0.96813 1.01010 1.01367 1.21415 0.94282 0.95759 1.03332 1.21826 0.97319 0.96137 0.97016 0.91570 1.21779 0.98794 0.81572 0.98208 1.48144 1.08799 1.06607 1.69579 1.20319 0.86814 0.85911 0.76462 1.90664 1.14886 1.86810 1.51212 1.22026 1.00306 0.92706 1.04676 1.21108 0.93985 0.78512 1.04282 1.48372 1.60258 1.17463 1.09347 1.22143 0.99918 0.92710 0.87688 1.22600 1.03797 0.95644 0.94929 1.22346 1.03132 0.97059 0.97072 1.20968 0.78197 0.86335 0.84384 1.90749 1.51469 1.77672 1.20761 1.21742 0.79130 0.99980 1.00048 1.22523 1.01791 0.99319 0.95506 1.20224 0.89777 0.90596 0.92604 0.93130 1.42487 1.19122 1.63934 1.10557 1.19263 0.93588 1.26761 0.97064 0.91225 1.24701 0.98565 1.01520 0.96043 1.69657 1.38054 1.48135 1.02233 0.86172 0.84273 0.78942 0.77118 1.20644 1.22007 1.21989 0.93173 0.92797 0.93373 0.92053 0.90514 0.90743 0.89577 0.88645 0.88748 0.89424 0.89151 0.90799 0.90105 0.89061 0.89961 0.88109 0.87739 0.91330 0.89656 0.93283 0.90748 0.78110 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.68 37.16 0.36 -1.77 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.70 2.15 -90.27 -0.19 -1.89 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.01 5.05 -3.49 -0.02 1.99 16 6 N -0.60 -9.62 2.97 -172.50 -0.51 -10.13 16 7 C 0.52 8.07 7.70 -10.99 -0.08 7.99 16 8 O -0.56 -10.15 15.39 5.55 0.09 -10.06 16 9 C -0.16 -1.89 4.37 -27.88 -0.12 -2.01 16 10 C 0.14 1.65 5.22 -4.04 -0.02 1.63 16 11 N -0.62 -6.06 2.93 -172.41 -0.51 -6.56 16 12 C 0.10 0.59 7.35 -3.12 -0.02 0.57 16 13 C -0.13 -0.57 7.18 -25.10 -0.18 -0.75 16 14 C -0.16 -1.03 6.86 -26.74 -0.18 -1.21 16 15 C 0.51 5.81 8.02 -10.86 -0.09 5.73 16 16 O -0.53 -8.47 17.59 5.56 0.10 -8.37 16 17 C 0.11 1.77 6.08 -3.71 -0.02 1.75 16 18 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 19 C 0.18 3.31 2.53 -67.88 -0.17 3.13 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.28 3.72 -53.38 -0.20 -16.48 16 22 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 26 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 35 H 0.07 1.40 6.63 -51.94 -0.34 1.05 16 36 H 0.09 1.48 5.73 -51.93 -0.30 1.18 16 37 H 0.10 1.19 7.69 -51.93 -0.40 0.79 16 38 H 0.09 0.99 7.94 -51.93 -0.41 0.57 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 48 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.33 5.93 -40.82 -0.24 9.09 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -32.30 405.04 -9.54 -41.83 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -9.02 Total: 9.17 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.29 Total: 3.96 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.49 Total: -59.20 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.30 -9.54 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.751 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds