Wall clock time and date at job start Tue Mar 31 2020 20:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46717 * 2 1 4 4 H 1.09006 * 109.52632 * 305.07569 * 3 2 1 5 5 C 1.53624 * 109.43497 * 65.29066 * 3 2 1 6 6 N 1.46926 * 108.54251 * 174.72840 * 5 3 2 7 7 C 1.34773 * 120.63381 * 126.36966 * 6 5 3 8 8 O 1.21283 * 120.00280 * 359.71124 * 7 6 5 9 9 C 1.50701 * 119.99914 * 179.71517 * 7 6 5 10 10 C 1.53006 * 109.46785 * 179.97438 * 9 7 6 11 11 N 1.46502 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.46769 * 124.34688 * 269.99994 * 11 10 9 13 13 C 1.54485 * 105.47030 * 197.03928 * 12 11 10 14 14 C 1.54627 * 101.76594 * 334.58477 * 13 12 11 15 15 C 1.34417 * 124.35146 * 90.03014 * 11 10 9 16 16 O 1.21279 * 124.94464 * 359.59579 * 15 11 10 17 17 C 1.46932 * 118.73582 * 306.08675 * 6 5 3 18 18 C 1.53185 * 108.77681 * 53.86489 * 17 6 5 19 19 C 1.53041 * 109.49854 * 185.00080 * 3 2 1 20 20 H 1.09003 * 109.45285 * 58.66546 * 19 3 2 21 21 N 1.46511 * 109.45860 * 298.70303 * 19 3 2 22 22 C 1.36929 * 119.99908 * 154.92944 * 21 19 3 23 23 H 1.07999 * 120.00866 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99847 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00002 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.46768 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47313 * 119.99662 * 26 24 22 29 29 H 1.48501 * 109.46649 * 239.99788 * 26 24 22 30 30 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47228 * 299.99998 * 1 2 3 32 32 H 1.08999 * 109.47061 * 60.00249 * 1 2 3 33 33 H 1.08994 * 109.47228 * 240.00002 * 2 1 3 34 34 H 1.08995 * 109.47188 * 119.99272 * 2 1 3 35 35 H 1.08989 * 109.74272 * 54.98412 * 5 3 2 36 36 H 1.09003 * 109.66189 * 294.41235 * 5 3 2 37 37 H 1.09003 * 109.47055 * 60.00012 * 9 7 6 38 38 H 1.08992 * 109.47545 * 299.99359 * 9 7 6 39 39 H 1.08994 * 109.46961 * 60.00181 * 10 9 7 40 40 H 1.08997 * 109.47044 * 299.99491 * 10 9 7 41 41 H 1.08998 * 110.24703 * 78.04283 * 12 11 10 42 42 H 1.08997 * 110.24528 * 316.03524 * 12 11 10 43 43 H 1.09000 * 110.96819 * 216.46072 * 13 12 11 44 44 H 1.08997 * 110.96657 * 92.70464 * 13 12 11 45 45 H 1.09005 * 110.48027 * 143.47533 * 14 13 12 46 46 H 1.09000 * 110.48552 * 266.11612 * 14 13 12 47 47 H 1.08994 * 109.58460 * 173.65212 * 17 6 5 48 48 H 1.09005 * 109.58506 * 294.07873 * 17 6 5 49 49 H 1.09005 * 109.49983 * 65.31135 * 18 17 6 50 50 H 1.09000 * 109.50006 * 185.38356 * 18 17 6 51 51 H 0.96998 * 119.99186 * 334.93134 * 21 19 3 52 52 H 0.96997 * 120.00082 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 -0.8408 5 6 1.6393 2.1263 1.3161 6 7 2.2449 3.4645 1.3506 7 6 1.4856 4.5565 1.5680 8 8 0.2896 4.4406 1.7324 9 6 2.1227 5.9217 1.6069 10 6 1.0476 6.9789 1.8667 11 7 1.6669 8.3061 1.9039 12 6 2.1921 8.9411 3.1184 13 6 2.3299 10.4405 2.7728 14 6 2.4908 10.3963 1.2356 15 6 1.8265 9.0989 0.8302 16 8 1.4870 8.8157 -0.2991 17 6 3.6951 3.5890 1.1497 18 6 4.0736 2.8883 -0.1589 19 6 3.5652 1.4452 -0.1258 20 1 3.8545 0.9371 -1.0457 21 7 4.1507 0.7477 1.0219 22 6 5.3879 0.1708 0.9141 23 1 5.9323 0.2303 -0.0168 24 6 5.9425 -0.4905 2.0013 25 7 5.2793 -0.5627 3.1359 26 14 7.6306 -1.2768 1.8545 27 1 8.1622 -1.0558 0.4857 28 1 8.5496 -0.6653 2.8477 29 1 7.5214 -2.7351 2.1132 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0007 1.5397 2.1606 36 1 0.5541 2.2150 1.3678 37 1 2.6073 6.1238 0.6516 38 1 2.8646 5.9539 2.4047 39 1 0.5627 6.7769 2.8217 40 1 0.3060 6.9467 1.0686 41 1 3.1655 8.5216 3.3726 42 1 1.4950 8.8072 3.9456 43 1 3.2132 10.8701 3.2453 44 1 1.4320 10.9900 3.0554 45 1 1.9845 11.2444 0.7746 46 1 3.5460 10.3862 0.9626 47 1 3.9668 4.6429 1.0917 48 1 4.2208 3.1191 1.9811 49 1 3.6192 3.4148 -0.9982 50 1 5.1577 2.8901 -0.2722 51 1 3.6619 0.6945 1.8580 52 1 5.6670 -1.0244 3.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037974492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:05 Heat of formation + Delta-G solvation = -86.999155 kcal Electronic energy + Delta-G solvation = -30529.528619 eV Core-core repulsion = 26527.823935 eV Total energy + Delta-G solvation = -4001.704684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62281 -41.12990 -39.29587 -37.48066 -35.91028 -35.41078 -34.74150 -33.41284 -31.30949 -30.99857 -29.72851 -28.43519 -26.83722 -25.59785 -25.08703 -24.58556 -22.68948 -22.17020 -20.86605 -20.33081 -19.64835 -19.24291 -18.42128 -17.58508 -17.23467 -17.05514 -16.80401 -16.53967 -16.16513 -15.85465 -15.59626 -15.13066 -15.05648 -14.79729 -14.66270 -14.54257 -14.42590 -14.13712 -14.04072 -13.90903 -13.61911 -13.30658 -13.23959 -13.03224 -12.88266 -12.82805 -12.66266 -12.40519 -12.36761 -12.16666 -12.11948 -12.04639 -11.85388 -11.80488 -11.59280 -11.46845 -11.14304 -10.98877 -10.85973 -10.75324 -9.77730 -9.61344 -8.92102 -7.88426 -5.14543 1.48770 1.50772 1.52928 1.55372 1.58898 1.80448 2.21448 2.59866 3.44741 3.45173 3.52055 3.67091 3.76130 3.84543 3.89404 3.96707 4.02267 4.07687 4.10752 4.22917 4.26563 4.34553 4.40568 4.44032 4.46869 4.58044 4.63701 4.68297 4.71082 4.74177 4.82716 4.86342 4.88217 4.93181 4.99533 5.03338 5.13255 5.15389 5.20704 5.23178 5.25910 5.29202 5.38968 5.50313 5.53127 5.60455 5.64958 6.14605 6.33423 6.42667 7.07722 7.14047 7.41191 8.16426 8.41069 9.34919 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002829 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.818884 B = 9893.610148 C =11174.060039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.080 0.920 5 C 0.125 3.875 6 N -0.602 5.602 7 C 0.515 3.485 8 O -0.584 6.584 9 C -0.143 4.143 10 C 0.147 3.853 11 N -0.619 5.619 12 C 0.090 3.910 13 C -0.119 4.119 14 C -0.149 4.149 15 C 0.498 3.502 16 O -0.589 6.589 17 C 0.121 3.879 18 C -0.144 4.144 19 C 0.173 3.827 20 H 0.045 0.955 21 N -0.723 5.723 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.268 1.268 28 H -0.297 1.297 29 H -0.301 1.301 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 21.250 -0.362 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.098 0.902 5 C 0.002 3.998 6 N -0.333 5.333 7 C 0.305 3.695 8 O -0.465 6.465 9 C -0.184 4.184 10 C 0.024 3.976 11 N -0.351 5.351 12 C -0.032 4.032 13 C -0.156 4.156 14 C -0.189 4.189 15 C 0.288 3.712 16 O -0.470 6.470 17 C -0.002 4.002 18 C -0.185 4.185 19 C 0.064 3.936 20 H 0.063 0.937 21 N -0.364 5.364 22 C -0.356 4.356 23 H 0.092 0.908 24 C -0.264 4.264 25 N -0.619 5.619 26 Si 0.793 3.207 27 H -0.193 1.193 28 H -0.224 1.224 29 H -0.229 1.229 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.120 0.880 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.127 20.919 -0.929 21.818 hybrid contribution 0.856 -1.240 0.344 1.545 sum -5.271 19.680 -0.585 20.382 Atomic orbital electron populations 1.21785 0.94787 1.01944 1.01810 1.21337 0.96043 0.95175 1.01769 1.21734 0.95853 0.96480 0.97178 0.90174 1.21589 0.98598 0.82075 0.97504 1.48196 1.09027 1.06410 1.69663 1.20911 0.86470 0.86832 0.75335 1.90651 1.16253 1.87312 1.52313 1.21969 1.00575 0.90363 1.05506 1.20913 0.93469 0.79661 1.03562 1.48516 1.59417 1.16587 1.10606 1.22480 1.00717 0.93680 0.86303 1.22646 1.05547 0.94494 0.92958 1.22388 1.03346 0.94317 0.98834 1.21884 0.77595 0.87945 0.83737 1.90708 1.54045 1.79128 1.23133 1.21672 0.78500 1.01582 0.98413 1.22402 1.01487 0.97797 0.96768 1.20424 0.90997 0.91441 0.90740 0.93681 1.42572 1.18329 1.64206 1.11314 1.19579 0.94270 1.25089 0.96708 0.90824 1.25364 1.01755 1.03200 0.96115 1.69804 1.39502 1.49793 1.02824 0.85225 0.80759 0.77330 0.77364 1.19269 1.22442 1.22895 0.92074 0.93150 0.92039 0.92037 0.93547 0.93128 0.89726 0.88575 0.86370 0.88628 0.92083 0.89386 0.88882 0.86285 0.89164 0.87418 0.86285 0.88026 0.92436 0.91183 0.91289 0.79243 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.68 71.98 0.70 -3.24 16 2 C -0.10 -3.40 5.19 30.60 0.16 -3.25 16 3 C -0.09 -3.02 2.15 -10.57 -0.02 -3.04 16 4 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 5 C 0.13 4.27 5.05 86.51 0.44 4.71 16 6 N -0.60 -18.91 2.97 -818.07 -2.43 -21.34 16 7 C 0.52 15.66 7.70 87.66 0.67 16.33 16 8 O -0.58 -21.22 15.39 -3.04 -0.05 -21.27 16 9 C -0.14 -3.23 4.37 29.85 0.13 -3.10 16 10 C 0.15 3.27 5.22 86.38 0.45 3.72 16 11 N -0.62 -11.07 2.93 -817.97 -2.40 -13.47 16 12 C 0.09 0.78 7.35 86.83 0.64 1.42 16 13 C -0.12 -0.57 7.18 31.65 0.23 -0.35 16 14 C -0.15 -1.58 6.86 30.59 0.21 -1.37 16 15 C 0.50 10.80 8.02 87.90 0.71 11.51 16 16 O -0.59 -19.13 17.59 -3.03 -0.05 -19.19 16 17 C 0.12 3.62 6.08 86.36 0.53 4.14 16 18 C -0.14 -4.54 5.78 30.67 0.18 -4.36 16 19 C 0.17 6.33 2.53 45.02 0.11 6.44 16 20 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 21 N -0.72 -33.19 3.72 -322.79 -1.20 -34.39 16 22 C -0.22 -11.59 9.93 84.04 0.83 -10.75 16 23 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 25 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 26 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.39 6.70 -2.39 -0.02 1.37 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.78 7.70 -2.39 -0.02 1.77 16 35 H 0.05 1.98 6.63 -2.39 -0.02 1.96 16 36 H 0.08 2.92 5.73 -2.39 -0.01 2.91 16 37 H 0.10 2.22 7.69 -2.39 -0.02 2.20 16 38 H 0.12 2.13 7.94 -2.39 -0.02 2.11 16 39 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 40 H 0.06 1.72 7.89 -2.39 -0.02 1.71 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.10 2.38 5.93 -2.39 -0.01 2.36 16 48 H 0.06 2.09 7.74 -2.38 -0.02 2.07 16 49 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.37 18.77 5.93 -92.71 -0.55 18.22 16 52 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -72.51 405.04 2.96 -69.55 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.35 Total: 34.57 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.42 Total: 15.34 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.74 Total: -125.81 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.10 Total: -40.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.51 2.96 -69.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.445 kcal (2) G-P(sol) polarization free energy of solvation -72.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds