Wall clock time and date at job start Tue Mar 31 2020 19:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46723 * 2 1 4 4 C 1.50698 * 109.47099 * 240.00533 * 2 1 3 5 5 N 1.34771 * 120.00256 * 59.99635 * 4 2 1 6 6 O 1.21283 * 119.99615 * 239.99909 * 4 2 1 7 7 C 1.50699 * 109.47202 * 120.00077 * 2 1 3 8 8 O 1.21280 * 120.00048 * 243.13574 * 7 2 1 9 9 N 1.34777 * 119.99863 * 63.13596 * 7 2 1 10 10 C 1.46931 * 120.62871 * 176.18963 * 9 7 2 11 11 C 1.53187 * 108.77483 * 233.63051 * 10 9 7 12 12 C 1.53044 * 109.31291 * 305.36519 * 11 10 9 13 13 C 1.52998 * 109.46386 * 181.38816 * 12 11 10 14 14 H 1.09008 * 110.88087 * 300.67373 * 13 12 11 15 15 C 1.55152 * 111.00568 * 176.79299 * 13 12 11 16 16 C 1.54428 * 102.89192 * 206.40507 * 15 13 12 17 17 N 1.47023 * 107.28207 * 22.18756 * 16 15 13 18 18 C 1.36941 * 125.64747 * 181.02817 * 17 16 15 19 19 H 1.08003 * 119.99795 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00222 * 0.03586 * 18 17 16 21 21 N 1.31625 * 119.99680 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00340 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46774 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47180 * 119.99705 * 22 20 18 25 25 H 1.48494 * 109.47104 * 240.00337 * 22 20 18 26 26 C 1.47426 * 108.70126 * 1.05889 * 17 16 15 27 27 C 1.53038 * 109.52566 * 61.36835 * 12 11 10 28 28 C 1.46921 * 120.63314 * 356.20741 * 9 7 2 29 29 H 1.09003 * 109.47112 * 305.63566 * 1 2 3 30 30 H 1.09001 * 109.47354 * 65.64025 * 1 2 3 31 31 H 1.09005 * 109.46834 * 185.63458 * 1 2 3 32 32 H 1.08997 * 109.46769 * 175.06960 * 3 2 1 33 33 H 1.08996 * 109.47167 * 295.06781 * 3 2 1 34 34 H 1.08999 * 109.47056 * 55.06977 * 3 2 1 35 35 H 0.97004 * 120.00415 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00263 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.58452 * 113.84021 * 10 9 7 38 38 H 1.09002 * 109.58733 * 353.41729 * 10 9 7 39 39 H 1.08998 * 109.49771 * 185.41570 * 11 10 9 40 40 H 1.08998 * 109.52869 * 65.33017 * 11 10 9 41 41 H 1.09003 * 109.45626 * 301.36141 * 12 11 10 42 42 H 1.08997 * 110.71846 * 324.74692 * 15 13 12 43 43 H 1.09003 * 110.72199 * 88.02280 * 15 13 12 44 44 H 1.09000 * 109.87786 * 262.76121 * 16 15 13 45 45 H 1.09000 * 110.00858 * 141.67938 * 16 15 13 46 46 H 0.96996 * 119.99508 * 180.02562 * 21 20 18 47 47 H 1.09006 * 110.36215 * 217.03157 * 26 17 16 48 48 H 1.08997 * 110.45956 * 94.76509 * 26 17 16 49 49 H 1.09002 * 109.49542 * 58.58722 * 27 12 11 50 50 H 1.09000 * 109.49490 * 178.67747 * 27 12 11 51 51 H 1.08993 * 109.59053 * 246.16274 * 28 9 7 52 52 H 1.09001 * 109.58287 * 6.44460 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.7067 -0.2498 -2.4545 6 8 2.7296 -1.6964 -1.1192 7 6 2.0324 -0.7104 1.2304 8 8 2.6820 -0.1057 2.0570 9 7 1.7597 -2.0177 1.4123 10 6 2.3119 -2.7445 2.5637 11 6 3.0447 -3.9899 2.0554 12 6 2.0942 -4.8173 1.1869 13 6 2.8121 -6.0798 0.7055 14 1 3.6998 -5.8251 0.1265 15 6 1.8550 -6.9858 -0.1132 16 6 2.4590 -8.3932 0.0853 17 7 3.2664 -8.3527 1.3133 18 6 3.9863 -9.3968 1.8299 19 1 4.5493 -9.2655 2.7422 20 6 3.9926 -10.6239 1.1809 21 7 3.3070 -10.7836 0.0687 22 14 4.9740 -12.0484 1.8859 23 1 5.6519 -11.6130 3.1334 24 1 4.0591 -13.1785 2.1877 25 1 5.9917 -12.4858 0.8970 26 6 3.1720 -7.0021 1.8969 27 6 1.6540 -3.9887 -0.0221 28 6 0.9051 -2.7433 0.4627 29 1 -0.3633 0.5988 0.8352 30 1 -0.3634 0.4239 -0.9362 31 1 -0.3633 -1.0228 0.1009 32 1 3.1263 1.4438 0.0883 33 1 1.7505 1.9302 -0.9308 34 1 1.6062 1.9812 0.8425 35 1 1.1487 0.5386 -2.5436 36 1 2.0298 -0.7072 -3.2466 37 1 1.5023 -3.0431 3.2296 38 1 3.0109 -2.1026 3.0999 39 1 3.3763 -4.5885 2.9037 40 1 3.9086 -3.6881 1.4633 41 1 1.2189 -5.0982 1.7726 42 1 0.8429 -6.9402 0.2887 43 1 1.8658 -6.7058 -1.1666 44 1 3.0906 -8.6488 -0.7655 45 1 1.6622 -9.1296 0.1897 46 1 3.3112 -11.6412 -0.3845 47 1 4.1285 -6.7080 2.3291 48 1 2.3882 -6.9680 2.6535 49 1 2.5309 -3.6863 -0.5946 50 1 0.9957 -4.5864 -0.6526 51 1 -0.0191 -3.0419 0.9572 52 1 0.6739 -2.0999 -0.3862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039134496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:13 Heat of formation + Delta-G solvation = -47.230584 kcal Electronic energy + Delta-G solvation = -31379.098093 eV Core-core repulsion = 27379.117904 eV Total energy + Delta-G solvation = -3999.980190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52041 -39.18109 -38.33022 -36.60607 -35.24724 -33.85139 -33.32539 -31.65746 -31.05086 -29.08027 -27.92944 -27.62627 -25.50123 -24.66517 -23.57062 -23.07471 -21.89529 -20.19458 -19.79402 -19.40799 -19.24594 -18.18059 -17.11930 -16.74728 -16.53290 -15.84459 -15.37979 -15.17223 -14.84357 -14.59680 -14.41690 -14.24630 -13.88977 -13.73993 -13.42516 -13.16129 -12.85777 -12.80864 -12.75495 -12.64921 -12.26957 -12.22747 -12.08424 -11.91341 -11.66357 -11.53996 -11.10277 -10.95265 -10.84096 -10.79600 -10.62067 -10.36526 -10.22349 -10.01701 -9.97626 -9.90780 -9.70344 -9.65988 -9.58368 -9.46798 -8.59930 -8.52092 -6.72421 -5.63103 -2.95593 2.16994 2.34844 2.87230 3.17219 3.44367 3.49697 3.52275 3.98556 4.28411 4.36377 4.52273 4.56637 4.76990 4.95675 4.99312 4.99549 5.09987 5.17390 5.25986 5.29163 5.31865 5.39888 5.52712 5.56313 5.58215 5.70136 5.73632 5.77442 5.83938 5.84952 5.96591 6.06070 6.17070 6.19253 6.28961 6.35045 6.43435 6.50607 6.57221 6.66249 6.68772 6.77119 6.84481 6.90681 7.14237 7.33339 7.65772 7.74493 7.86997 7.92188 8.03062 8.35688 9.31362 9.92215 10.59555 11.48760 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.002528 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.590297 B =11072.387930 C =11587.253112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.125 4.125 4 C 0.524 3.476 5 N -0.851 5.851 6 O -0.512 6.512 7 C 0.541 3.459 8 O -0.542 6.542 9 N -0.589 5.589 10 C 0.113 3.887 11 C -0.127 4.127 12 C -0.071 4.071 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.137 4.137 16 C 0.177 3.823 17 N -0.608 5.608 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.142 3.858 27 C -0.129 4.129 28 C 0.109 3.891 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.250 0.750 47 H 0.034 0.966 48 H 0.016 0.984 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 26.715 -4.674 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.113 4.113 3 C -0.183 4.183 4 C 0.307 3.693 5 N -0.416 5.416 6 O -0.386 6.386 7 C 0.327 3.673 8 O -0.419 6.419 9 N -0.320 5.320 10 C -0.009 4.009 11 C -0.165 4.165 12 C -0.090 4.090 13 C -0.114 4.114 14 H 0.089 0.911 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.334 5.334 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.016 3.984 27 C -0.167 4.167 28 C -0.014 4.014 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.229 0.771 36 H 0.237 0.763 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.033 0.967 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.091 26.154 -3.992 27.975 hybrid contribution 0.274 -0.705 -0.240 0.794 sum -8.816 25.449 -4.232 27.264 Atomic orbital electron populations 1.22220 0.90520 1.04601 1.03925 1.21105 0.98987 0.98401 0.92768 1.21660 1.02834 0.91100 1.02702 1.20074 0.80423 0.84075 0.84733 1.43793 1.56105 1.33856 1.07867 1.90858 1.36475 1.24863 1.86408 1.19647 0.79522 0.81848 0.86313 1.90682 1.40255 1.65765 1.45241 1.47873 1.49298 1.08611 1.26232 1.21667 0.98251 0.93694 0.87240 1.21959 0.98815 0.95301 1.00451 1.21066 0.97874 0.94391 0.95681 1.22324 0.98135 0.92970 0.97935 0.91077 1.22896 0.97971 0.98231 0.98424 1.21138 0.93911 0.90241 0.89444 1.44511 1.56060 1.06878 1.25917 1.19123 1.21521 0.88768 1.05768 0.90516 1.24800 1.00590 0.97779 0.97589 1.69996 1.45143 1.23500 1.18482 0.86055 0.79243 0.82557 0.78018 1.20547 1.21840 1.21844 1.21557 0.97451 0.85826 0.93547 1.22026 1.01821 0.94502 0.98308 1.22013 0.92685 0.94603 0.92089 0.90449 0.90882 0.90180 0.91133 0.91669 0.90517 0.77112 0.76259 0.91542 0.89304 0.90410 0.91390 0.91511 0.92788 0.92592 0.93905 0.94271 0.93964 0.94734 0.96659 0.89224 0.91216 0.91897 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.09 37.16 0.30 -0.54 16 2 C -0.11 -0.90 0.60 -156.81 -0.09 -0.99 16 3 C -0.13 -0.89 7.74 37.16 0.29 -0.60 16 4 C 0.52 4.71 5.08 -10.99 -0.06 4.65 16 5 N -0.85 -3.98 8.59 31.22 0.27 -3.71 16 6 O -0.51 -6.79 12.55 5.55 0.07 -6.72 16 7 C 0.54 6.86 6.03 -10.99 -0.07 6.80 16 8 O -0.54 -8.55 15.38 5.56 0.09 -8.46 16 9 N -0.59 -7.22 2.68 -172.78 -0.46 -7.69 16 10 C 0.11 1.44 6.42 -3.71 -0.02 1.41 16 11 C -0.13 -1.76 5.21 -26.61 -0.14 -1.90 16 12 C -0.07 -1.02 1.65 -90.58 -0.15 -1.17 16 13 C -0.09 -1.71 2.56 -88.48 -0.23 -1.93 16 14 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 15 C -0.14 -2.63 5.43 -24.84 -0.13 -2.77 16 16 C 0.18 4.49 5.38 -3.01 -0.02 4.47 16 17 N -0.61 -16.22 3.39 -170.00 -0.58 -16.80 16 18 C -0.22 -6.48 10.28 -15.06 -0.15 -6.63 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -28.02 10.31 55.49 0.57 -27.44 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 C 0.14 3.06 5.80 -2.53 -0.01 3.05 16 27 C -0.13 -1.67 4.90 -26.61 -0.13 -1.80 16 28 C 0.11 1.16 3.88 -3.71 -0.01 1.15 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.20 7.41 -51.93 -0.38 -0.19 16 31 H 0.08 0.48 4.93 -51.93 -0.26 0.22 16 32 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.06 0.25 7.43 -51.93 -0.39 -0.14 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 0.65 7.54 -40.82 -0.31 0.34 16 36 H 0.41 1.69 8.93 -40.82 -0.36 1.32 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.21 7.03 -51.93 -0.36 0.84 16 39 H 0.08 1.07 7.32 -51.93 -0.38 0.69 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 42 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 43 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 44 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 45 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.03 0.74 8.02 -51.93 -0.42 0.32 16 48 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 49 H 0.09 1.36 5.93 -51.93 -0.31 1.05 16 50 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.08 0.74 3.15 -51.93 -0.16 0.58 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -36.31 383.49 -8.68 -44.99 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.66 Total: -0.48 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.73 Total: 2.75 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.20 Total: -55.64 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.16 Total: -15.18 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.31 -8.68 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039134496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.241 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds