Wall clock time and date at job start Tue Mar 31 2020 19:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46723 * 2 1 4 4 C 1.50698 * 109.47099 * 240.00533 * 2 1 3 5 5 N 1.34771 * 120.00256 * 59.99635 * 4 2 1 6 6 O 1.21283 * 119.99615 * 239.99909 * 4 2 1 7 7 C 1.50699 * 109.47202 * 120.00077 * 2 1 3 8 8 O 1.21280 * 120.00048 * 243.13574 * 7 2 1 9 9 N 1.34777 * 119.99863 * 63.13596 * 7 2 1 10 10 C 1.46931 * 120.62871 * 176.18963 * 9 7 2 11 11 C 1.53187 * 108.77483 * 233.63051 * 10 9 7 12 12 C 1.53044 * 109.31291 * 305.36519 * 11 10 9 13 13 C 1.52998 * 109.46386 * 181.38816 * 12 11 10 14 14 H 1.09008 * 110.88087 * 300.67373 * 13 12 11 15 15 C 1.55152 * 111.00568 * 176.79299 * 13 12 11 16 16 C 1.54428 * 102.89192 * 206.40507 * 15 13 12 17 17 N 1.47023 * 107.28207 * 22.18756 * 16 15 13 18 18 C 1.36941 * 125.64747 * 181.02817 * 17 16 15 19 19 H 1.08003 * 119.99795 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00222 * 0.03586 * 18 17 16 21 21 N 1.31625 * 119.99680 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00340 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46774 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47180 * 119.99705 * 22 20 18 25 25 H 1.48494 * 109.47104 * 240.00337 * 22 20 18 26 26 C 1.47426 * 108.70126 * 1.05889 * 17 16 15 27 27 C 1.53038 * 109.52566 * 61.36835 * 12 11 10 28 28 C 1.46921 * 120.63314 * 356.20741 * 9 7 2 29 29 H 1.09003 * 109.47112 * 305.63566 * 1 2 3 30 30 H 1.09001 * 109.47354 * 65.64025 * 1 2 3 31 31 H 1.09005 * 109.46834 * 185.63458 * 1 2 3 32 32 H 1.08997 * 109.46769 * 175.06960 * 3 2 1 33 33 H 1.08996 * 109.47167 * 295.06781 * 3 2 1 34 34 H 1.08999 * 109.47056 * 55.06977 * 3 2 1 35 35 H 0.97004 * 120.00415 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00263 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.58452 * 113.84021 * 10 9 7 38 38 H 1.09002 * 109.58733 * 353.41729 * 10 9 7 39 39 H 1.08998 * 109.49771 * 185.41570 * 11 10 9 40 40 H 1.08998 * 109.52869 * 65.33017 * 11 10 9 41 41 H 1.09003 * 109.45626 * 301.36141 * 12 11 10 42 42 H 1.08997 * 110.71846 * 324.74692 * 15 13 12 43 43 H 1.09003 * 110.72199 * 88.02280 * 15 13 12 44 44 H 1.09000 * 109.87786 * 262.76121 * 16 15 13 45 45 H 1.09000 * 110.00858 * 141.67938 * 16 15 13 46 46 H 0.96996 * 119.99508 * 180.02562 * 21 20 18 47 47 H 1.09006 * 110.36215 * 217.03157 * 26 17 16 48 48 H 1.08997 * 110.45956 * 94.76509 * 26 17 16 49 49 H 1.09002 * 109.49542 * 58.58722 * 27 12 11 50 50 H 1.09000 * 109.49490 * 178.67747 * 27 12 11 51 51 H 1.08993 * 109.59053 * 246.16274 * 28 9 7 52 52 H 1.09001 * 109.58287 * 6.44460 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.7067 -0.2498 -2.4545 6 8 2.7296 -1.6964 -1.1192 7 6 2.0324 -0.7104 1.2304 8 8 2.6820 -0.1057 2.0570 9 7 1.7597 -2.0177 1.4123 10 6 2.3119 -2.7445 2.5637 11 6 3.0447 -3.9899 2.0554 12 6 2.0942 -4.8173 1.1869 13 6 2.8121 -6.0798 0.7055 14 1 3.6998 -5.8251 0.1265 15 6 1.8550 -6.9858 -0.1132 16 6 2.4590 -8.3932 0.0853 17 7 3.2664 -8.3527 1.3133 18 6 3.9863 -9.3968 1.8299 19 1 4.5493 -9.2655 2.7422 20 6 3.9926 -10.6239 1.1809 21 7 3.3070 -10.7836 0.0687 22 14 4.9740 -12.0484 1.8859 23 1 5.6519 -11.6130 3.1334 24 1 4.0591 -13.1785 2.1877 25 1 5.9917 -12.4858 0.8970 26 6 3.1720 -7.0021 1.8969 27 6 1.6540 -3.9887 -0.0221 28 6 0.9051 -2.7433 0.4627 29 1 -0.3633 0.5988 0.8352 30 1 -0.3634 0.4239 -0.9362 31 1 -0.3633 -1.0228 0.1009 32 1 3.1263 1.4438 0.0883 33 1 1.7505 1.9302 -0.9308 34 1 1.6062 1.9812 0.8425 35 1 1.1487 0.5386 -2.5436 36 1 2.0298 -0.7072 -3.2466 37 1 1.5023 -3.0431 3.2296 38 1 3.0109 -2.1026 3.0999 39 1 3.3763 -4.5885 2.9037 40 1 3.9086 -3.6881 1.4633 41 1 1.2189 -5.0982 1.7726 42 1 0.8429 -6.9402 0.2887 43 1 1.8658 -6.7058 -1.1666 44 1 3.0906 -8.6488 -0.7655 45 1 1.6622 -9.1296 0.1897 46 1 3.3112 -11.6412 -0.3845 47 1 4.1285 -6.7080 2.3291 48 1 2.3882 -6.9680 2.6535 49 1 2.5309 -3.6863 -0.5946 50 1 0.9957 -4.5864 -0.6526 51 1 -0.0191 -3.0419 0.9572 52 1 0.6739 -2.0999 -0.3862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039134496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:12 Heat of formation + Delta-G solvation = -73.707318 kcal Electronic energy + Delta-G solvation = -31380.246211 eV Core-core repulsion = 27379.117904 eV Total energy + Delta-G solvation = -4001.128307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.31973 -40.20702 -39.55138 -38.02163 -35.96138 -35.23922 -34.16570 -33.33457 -32.07149 -30.90803 -29.33684 -28.30193 -27.01749 -25.89277 -24.74203 -24.12985 -22.88678 -21.76088 -21.24365 -20.80298 -20.01404 -18.97029 -18.81583 -17.79031 -17.37314 -16.81311 -16.59455 -16.37243 -16.14592 -15.85463 -15.76210 -15.29235 -15.18544 -14.90899 -14.40385 -14.25977 -14.06650 -13.81878 -13.79985 -13.63222 -13.40269 -13.36729 -13.18394 -13.05962 -12.94725 -12.86841 -12.75289 -12.43196 -12.21557 -12.09812 -12.00808 -11.95529 -11.79629 -11.58490 -11.34526 -11.16494 -11.04326 -10.88398 -10.71913 -10.66572 -10.56773 -9.59012 -8.88700 -7.85397 -5.20719 1.42418 1.43429 1.45071 1.55491 1.57102 2.01260 2.48683 2.57666 3.24732 3.32117 3.62077 3.71715 3.76102 3.82152 3.84490 3.92861 4.02160 4.13650 4.21916 4.29379 4.43046 4.44483 4.47910 4.61426 4.65139 4.68440 4.72192 4.76551 4.78127 4.82308 4.84804 4.88924 4.98312 5.02351 5.09098 5.12671 5.17213 5.20307 5.23446 5.34397 5.42940 5.46668 5.58020 5.62708 5.70967 5.79146 5.97719 6.20587 6.39313 6.44685 7.09700 7.10693 7.34521 7.78698 8.43955 9.25336 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.002528 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.590297 B =11072.387930 C =11587.253112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.124 4.124 4 C 0.522 3.478 5 N -0.827 5.827 6 O -0.561 6.561 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.591 5.591 10 C 0.115 3.885 11 C -0.120 4.120 12 C -0.060 4.060 13 C -0.078 4.078 14 H 0.054 0.946 15 C -0.119 4.119 16 C 0.184 3.816 17 N -0.631 5.631 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.980 3.020 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.139 3.861 27 C -0.123 4.123 28 C 0.111 3.889 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.418 0.582 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.004 0.996 45 H 0.005 0.995 46 H 0.246 0.754 47 H 0.032 0.968 48 H 0.028 0.972 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 28.735 -5.128 31.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.181 4.181 4 C 0.305 3.695 5 N -0.392 5.392 6 O -0.440 6.440 7 C 0.316 3.684 8 O -0.464 6.464 9 N -0.322 5.322 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.079 4.079 13 C -0.097 4.097 14 H 0.072 0.928 15 C -0.157 4.157 16 C 0.058 3.942 17 N -0.358 5.358 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.808 3.192 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.014 3.986 27 C -0.161 4.161 28 C -0.011 4.011 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.022 0.978 45 H 0.023 0.977 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.105 0.895 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.239 28.236 -4.472 30.718 hybrid contribution 0.973 -1.292 -0.113 1.622 sum -10.265 26.944 -4.585 29.195 Atomic orbital electron populations 1.22282 0.87655 1.04939 1.06143 1.21123 1.01116 0.98173 0.90421 1.21697 1.00992 0.90639 1.04789 1.20196 0.79914 0.83534 0.85839 1.43595 1.55062 1.33911 1.06647 1.90858 1.38826 1.27156 1.87139 1.20483 0.78790 0.81932 0.87209 1.90654 1.42059 1.66681 1.47041 1.47994 1.49223 1.08793 1.26161 1.21586 0.98567 0.92718 0.87831 1.21857 0.98141 0.95914 0.99950 1.20981 0.97748 0.92627 0.96585 1.22181 0.97671 0.93895 0.95977 0.92774 1.22748 0.98685 0.94208 1.00044 1.20933 0.92215 0.93187 0.87814 1.44864 1.55976 1.08355 1.26559 1.19516 1.21716 0.89856 1.05995 0.90227 1.25691 1.01983 1.00459 0.98146 1.70221 1.46500 1.23751 1.19704 0.84985 0.77621 0.78949 0.77650 1.19051 1.21638 1.21906 1.21745 0.97718 0.84235 0.94924 1.21939 1.01462 0.95409 0.97308 1.22144 0.92620 0.93662 0.92665 0.89962 0.87359 0.90398 0.93930 0.87797 0.90535 0.74945 0.75575 0.89509 0.90799 0.90567 0.93682 0.90099 0.90536 0.90694 0.97819 0.97652 0.94459 0.94998 0.95454 0.91472 0.90173 0.89537 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.09 71.98 0.58 -0.48 16 2 C -0.10 -1.50 0.60 -53.67 -0.03 -1.54 16 3 C -0.12 -1.50 7.74 71.98 0.56 -0.95 16 4 C 0.52 8.28 5.08 87.66 0.45 8.72 16 5 N -0.83 -5.03 8.59 -173.54 -1.49 -6.52 16 6 O -0.56 -14.47 12.55 -3.04 -0.04 -14.51 16 7 C 0.53 13.02 6.03 87.66 0.53 13.55 16 8 O -0.58 -18.73 15.38 -3.03 -0.05 -18.78 16 9 N -0.59 -13.77 2.68 -818.93 -2.20 -15.97 16 10 C 0.12 2.84 6.42 86.36 0.55 3.40 16 11 C -0.12 -3.31 5.21 30.67 0.16 -3.15 16 12 C -0.06 -1.65 1.65 -10.77 -0.02 -1.66 16 13 C -0.08 -2.79 2.56 -9.41 -0.02 -2.81 16 14 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 15 C -0.12 -4.47 5.43 31.82 0.17 -4.29 16 16 C 0.18 9.57 5.38 86.76 0.47 10.04 16 17 N -0.63 -34.47 3.39 -691.77 -2.35 -36.82 16 18 C -0.24 -14.31 10.28 84.03 0.86 -13.44 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 21 N -0.95 -59.72 10.31 21.65 0.22 -59.50 16 22 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 C 0.14 5.97 5.80 86.85 0.50 6.47 16 27 C -0.12 -2.95 4.90 30.67 0.15 -2.80 16 28 C 0.11 2.08 3.88 86.36 0.34 2.41 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 -0.01 7.41 -2.39 -0.02 -0.02 16 31 H 0.08 0.61 4.93 -2.38 -0.01 0.60 16 32 H 0.04 0.76 8.00 -2.39 -0.02 0.74 16 33 H 0.10 0.39 7.43 -2.39 -0.02 0.38 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.42 -0.52 7.54 -92.71 -0.70 -1.22 16 36 H 0.41 2.24 8.93 -92.71 -0.83 1.41 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.05 7.03 -2.39 -0.02 2.04 16 39 H 0.08 2.08 7.32 -2.39 -0.02 2.07 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 42 H 0.08 2.56 8.04 -2.39 -0.02 2.55 16 43 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 44 H 0.00 0.21 7.38 -2.39 -0.02 0.19 16 45 H 0.01 0.30 7.50 -2.39 -0.02 0.29 16 46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.03 1.37 8.02 -2.38 -0.02 1.35 16 48 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 49 H 0.07 1.99 5.93 -2.39 -0.01 1.98 16 50 H 0.08 1.76 7.32 -2.39 -0.02 1.74 16 51 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.10 1.51 3.15 -2.39 -0.01 1.50 16 Total: -1.00 -84.17 383.49 1.25 -82.91 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -0.59 Total: 9.73 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.71 Total: 9.75 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -5.81 Total: -118.80 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.08 Total: -33.29 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -84.17 1.25 -82.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039134496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.207 kcal (2) G-P(sol) polarization free energy of solvation -84.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds