Wall clock time and date at job start Tue Mar 31 2020 19:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46696 * 2 1 4 4 C 1.50696 * 109.46653 * 240.00278 * 2 1 3 5 5 N 1.34774 * 120.00562 * 59.99890 * 4 2 1 6 6 O 1.21287 * 119.99439 * 239.99746 * 4 2 1 7 7 C 1.50691 * 109.46825 * 120.00113 * 2 1 3 8 8 O 1.21281 * 119.99989 * 243.07973 * 7 2 1 9 9 N 1.34778 * 120.00100 * 63.08986 * 7 2 1 10 10 C 1.46931 * 120.62829 * 176.19233 * 9 7 2 11 11 C 1.53200 * 108.77323 * 233.62715 * 10 9 7 12 12 C 1.53044 * 109.30677 * 305.36561 * 11 10 9 13 13 C 1.53002 * 109.45766 * 181.38612 * 12 11 10 14 14 H 1.09004 * 110.88679 * 299.30128 * 13 12 11 15 15 C 1.55161 * 111.00311 * 63.17637 * 13 12 11 16 16 C 1.54329 * 102.93879 * 153.57794 * 15 13 12 17 17 N 1.47018 * 107.27289 * 337.80748 * 16 15 13 18 18 C 1.36933 * 125.64606 * 178.89978 * 17 16 15 19 19 H 1.08006 * 119.99757 * 185.16243 * 18 17 16 20 20 C 1.38811 * 120.00340 * 5.16125 * 18 17 16 21 21 N 1.31617 * 119.99729 * 5.22058 * 20 18 17 22 22 Si 1.86800 * 120.00186 * 185.21716 * 20 18 17 23 23 H 1.48496 * 109.47277 * 95.00128 * 22 20 18 24 24 H 1.48501 * 109.47337 * 215.00199 * 22 20 18 25 25 H 1.48508 * 109.47263 * 335.00063 * 22 20 18 26 26 C 1.47468 * 108.72314 * 358.97864 * 17 16 15 27 27 C 1.53040 * 109.53972 * 61.36801 * 12 11 10 28 28 C 1.46925 * 120.63330 * 356.20707 * 9 7 2 29 29 H 1.09001 * 109.46669 * 305.63534 * 1 2 3 30 30 H 1.09002 * 109.47049 * 65.63688 * 1 2 3 31 31 H 1.09001 * 109.47161 * 185.63984 * 1 2 3 32 32 H 1.09005 * 109.46431 * 175.07089 * 3 2 1 33 33 H 1.08997 * 109.47321 * 295.06488 * 3 2 1 34 34 H 1.08995 * 109.47251 * 55.07256 * 3 2 1 35 35 H 0.97003 * 119.99873 * 0.02562 * 5 4 2 36 36 H 0.96997 * 120.00223 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.58997 * 113.84156 * 10 9 7 38 38 H 1.08999 * 109.59018 * 353.41039 * 10 9 7 39 39 H 1.08992 * 109.49882 * 185.41634 * 11 10 9 40 40 H 1.08993 * 109.49709 * 65.31410 * 11 10 9 41 41 H 1.08998 * 109.45946 * 301.33850 * 12 11 10 42 42 H 1.09004 * 110.72304 * 271.93764 * 15 13 12 43 43 H 1.08997 * 110.72121 * 35.22018 * 15 13 12 44 44 H 1.08999 * 109.88017 * 97.22608 * 16 15 13 45 45 H 1.09003 * 109.88009 * 218.38797 * 16 15 13 46 46 H 0.97007 * 119.99679 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.34437 * 265.25468 * 26 17 16 48 48 H 1.08997 * 110.40926 * 142.91579 * 26 17 16 49 49 H 1.09001 * 109.49995 * 58.58231 * 27 12 11 50 50 H 1.08999 * 109.49334 * 178.68072 * 27 12 11 51 51 H 1.09000 * 109.58502 * 246.16357 * 28 9 7 52 52 H 1.09003 * 109.58118 * 6.58421 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.7067 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1192 7 6 2.0323 -0.7104 1.2304 8 8 2.6828 -0.1060 2.0565 9 7 1.7588 -2.0175 1.4127 10 6 2.3108 -2.7442 2.5642 11 6 3.0427 -3.9905 2.0560 12 6 2.0912 -4.8173 1.1881 13 6 2.8081 -6.0805 0.7068 14 1 3.6822 -5.8266 0.1071 15 6 3.1989 -6.9880 1.9031 16 6 3.2435 -8.3946 1.2696 17 7 2.4158 -8.3529 0.0553 18 6 2.2120 -9.3963 -0.8078 19 1 1.6527 -9.2421 -1.7188 20 6 2.7243 -10.6520 -0.5120 21 7 3.3163 -10.8656 0.6440 22 14 2.5733 -12.0388 -1.7543 23 1 3.8148 -12.1139 -2.5656 24 1 2.3708 -13.3243 -1.0391 25 1 1.4141 -11.7806 -2.6460 26 6 1.8427 -7.0010 -0.0807 27 6 1.6510 -3.9890 -0.0211 28 6 0.9034 -2.7428 0.4636 29 1 -0.3633 0.5988 0.8353 30 1 -0.3633 0.4239 -0.9362 31 1 -0.3633 -1.0227 0.1010 32 1 3.1264 1.4437 0.0883 33 1 1.7506 1.9302 -0.9308 34 1 1.6063 1.9812 0.8425 35 1 1.1493 0.5390 -2.5436 36 1 2.0302 -0.7070 -3.2466 37 1 1.5013 -3.0422 3.2305 38 1 3.0105 -2.1028 3.1000 39 1 3.3741 -4.5891 2.9044 40 1 3.9063 -3.6888 1.4634 41 1 1.2161 -5.0978 1.7743 42 1 4.1776 -6.7102 2.2944 43 1 2.4419 -6.9415 2.6859 44 1 4.2703 -8.6517 1.0097 45 1 2.8408 -9.1285 1.9678 46 1 3.6739 -11.7432 0.8509 47 1 0.8447 -6.9667 0.3564 48 1 1.8086 -6.7063 -1.1296 49 1 2.5278 -3.6873 -0.5942 50 1 0.9920 -4.5865 -0.6509 51 1 -0.0209 -3.0406 0.9587 52 1 0.6744 -2.1003 -0.3866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039134499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:16 Heat of formation + Delta-G solvation = -47.635010 kcal Electronic energy + Delta-G solvation = -31409.091093 eV Core-core repulsion = 27409.093366 eV Total energy + Delta-G solvation = -3999.997727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51380 -39.17674 -38.33024 -36.60729 -35.23797 -33.85462 -33.31069 -31.65698 -31.05551 -29.12725 -27.82374 -27.66507 -25.62600 -24.48569 -23.66824 -23.06052 -21.88612 -20.18493 -19.80274 -19.40895 -19.23899 -18.17009 -17.11634 -16.75491 -16.52516 -15.83446 -15.37056 -15.17414 -14.86789 -14.58793 -14.39769 -14.23399 -13.88277 -13.75656 -13.44120 -13.16812 -12.85263 -12.80575 -12.69684 -12.63985 -12.38449 -12.20785 -12.06361 -11.88722 -11.62321 -11.54826 -11.11769 -11.00750 -10.84025 -10.78924 -10.61548 -10.36552 -10.21411 -10.03308 -9.97766 -9.90010 -9.71958 -9.69694 -9.54775 -9.45251 -8.60117 -8.53304 -6.72235 -5.62941 -2.96866 2.18191 2.35088 2.87216 3.18366 3.43956 3.48605 3.50926 3.99132 4.29439 4.37246 4.53028 4.56041 4.77898 4.96255 4.99718 4.99939 5.10365 5.17847 5.26394 5.29773 5.31493 5.40725 5.52200 5.56220 5.57953 5.64907 5.75734 5.80693 5.83093 5.84159 5.99934 6.03006 6.13807 6.20971 6.31705 6.32514 6.43407 6.51156 6.57121 6.66915 6.68751 6.75801 6.85810 6.90958 7.13752 7.33130 7.62069 7.76250 7.88387 7.91415 8.02864 8.35751 9.30329 9.91653 10.59379 11.48018 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.002657 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.625378 B =10536.489875 C =11360.948643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.125 4.125 4 C 0.524 3.476 5 N -0.851 5.851 6 O -0.512 6.512 7 C 0.541 3.459 8 O -0.543 6.543 9 N -0.589 5.589 10 C 0.113 3.887 11 C -0.126 4.126 12 C -0.071 4.071 13 C -0.095 4.095 14 H 0.070 0.930 15 C -0.137 4.137 16 C 0.175 3.825 17 N -0.607 5.607 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.143 3.857 27 C -0.130 4.130 28 C 0.108 3.892 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.052 0.948 46 H 0.251 0.749 47 H 0.015 0.985 48 H 0.034 0.966 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 26.846 -1.986 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.113 4.113 3 C -0.183 4.183 4 C 0.307 3.693 5 N -0.416 5.416 6 O -0.386 6.386 7 C 0.327 3.673 8 O -0.420 6.420 9 N -0.320 5.320 10 C -0.009 4.009 11 C -0.164 4.164 12 C -0.090 4.090 13 C -0.114 4.114 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.050 3.950 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.017 3.983 27 C -0.168 4.168 28 C -0.014 4.014 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.229 0.771 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.052 0.948 49 H 0.108 0.892 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.567 26.276 -1.275 27.114 hybrid contribution -0.221 -0.677 -1.154 1.356 sum -6.788 25.599 -2.429 26.595 Atomic orbital electron populations 1.22223 0.90504 1.04636 1.03928 1.21103 0.99006 0.98386 0.92763 1.21659 1.02813 0.91108 1.02704 1.20072 0.80433 0.84078 0.84733 1.43793 1.56109 1.33830 1.07879 1.90859 1.36491 1.24846 1.86407 1.19647 0.79501 0.81837 0.86305 1.90679 1.40268 1.65781 1.45287 1.47874 1.49265 1.08636 1.26231 1.21664 0.98240 0.93679 0.87285 1.21940 0.98823 0.95269 1.00333 1.21066 0.97858 0.94374 0.95717 1.22327 0.98601 0.92995 0.97473 0.91111 1.22889 0.99663 0.98129 0.96898 1.21148 0.94970 0.90734 0.88130 1.44511 1.55196 1.06824 1.26749 1.19073 1.29559 0.87276 0.99454 0.90617 1.24804 1.01291 0.97352 0.97241 1.69982 1.43928 1.21758 1.21262 0.86119 0.77593 0.81917 0.80279 1.21747 1.21800 1.20681 1.21549 0.94134 0.85862 0.96725 1.22047 1.01908 0.94539 0.98323 1.22023 0.92680 0.94613 0.92081 0.90459 0.90869 0.90147 0.91145 0.91665 0.90524 0.77119 0.76235 0.91566 0.89334 0.90543 0.91447 0.91483 0.92587 0.92617 0.95181 0.92943 0.93899 0.96708 0.94791 0.89202 0.91064 0.91824 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 8.09 37.16 0.30 -0.57 16 2 C -0.11 -0.91 0.60 -156.81 -0.09 -1.00 16 3 C -0.13 -0.89 7.74 37.16 0.29 -0.60 16 4 C 0.52 4.81 5.08 -10.99 -0.06 4.76 16 5 N -0.85 -4.21 8.59 31.22 0.27 -3.94 16 6 O -0.51 -6.89 12.56 5.55 0.07 -6.82 16 7 C 0.54 6.86 6.03 -10.99 -0.07 6.80 16 8 O -0.54 -8.50 15.38 5.56 0.09 -8.42 16 9 N -0.59 -7.22 2.68 -172.76 -0.46 -7.68 16 10 C 0.11 1.41 6.42 -3.70 -0.02 1.38 16 11 C -0.13 -1.68 5.20 -26.60 -0.14 -1.82 16 12 C -0.07 -1.02 1.65 -90.57 -0.15 -1.17 16 13 C -0.09 -1.71 2.56 -88.47 -0.23 -1.94 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.14 -2.67 5.42 -24.89 -0.14 -2.80 16 16 C 0.17 4.44 5.40 -3.06 -0.02 4.42 16 17 N -0.61 -16.15 3.40 -170.04 -0.58 -16.73 16 18 C -0.23 -6.50 10.27 -15.06 -0.15 -6.65 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.32 5.46 -17.43 -0.10 -0.41 16 21 N -0.92 -27.97 10.41 55.49 0.58 -27.39 16 22 Si 0.91 22.68 29.56 -169.99 -5.02 17.65 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.14 3.06 5.80 -2.51 -0.01 3.05 16 27 C -0.13 -1.74 4.91 -26.61 -0.13 -1.87 16 28 C 0.11 1.19 3.88 -3.71 -0.01 1.17 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.21 7.41 -51.93 -0.38 -0.17 16 31 H 0.08 0.50 4.93 -51.93 -0.26 0.24 16 32 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.06 0.25 7.43 -51.93 -0.39 -0.13 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 0.75 7.54 -40.82 -0.31 0.44 16 36 H 0.41 1.82 8.93 -40.82 -0.36 1.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.17 7.03 -51.93 -0.36 0.81 16 39 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 42 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 44 H 0.03 0.84 7.80 -51.93 -0.41 0.43 16 45 H 0.05 1.47 7.10 -51.93 -0.37 1.11 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.02 0.32 8.03 -51.93 -0.42 -0.10 16 48 H 0.03 0.71 8.02 -51.93 -0.42 0.30 16 49 H 0.09 1.40 5.93 -51.93 -0.31 1.09 16 50 H 0.07 0.95 7.32 -51.93 -0.38 0.57 16 51 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.08 0.77 3.15 -51.93 -0.16 0.60 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -36.20 383.62 -8.67 -44.87 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.66 Total: -0.06 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.73 Total: 2.73 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.19 Total: -55.75 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.16 Total: -15.23 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.20 -8.67 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039134499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.764 kcal (2) G-P(sol) polarization free energy of solvation -36.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds