Wall clock time and date at job start Tue Mar 31 2020 19:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46696 * 2 1 4 4 C 1.50696 * 109.46653 * 240.00278 * 2 1 3 5 5 N 1.34774 * 120.00562 * 59.99890 * 4 2 1 6 6 O 1.21287 * 119.99439 * 239.99746 * 4 2 1 7 7 C 1.50691 * 109.46825 * 120.00113 * 2 1 3 8 8 O 1.21281 * 119.99989 * 243.07973 * 7 2 1 9 9 N 1.34778 * 120.00100 * 63.08986 * 7 2 1 10 10 C 1.46931 * 120.62829 * 176.19233 * 9 7 2 11 11 C 1.53200 * 108.77323 * 233.62715 * 10 9 7 12 12 C 1.53044 * 109.30677 * 305.36561 * 11 10 9 13 13 C 1.53002 * 109.45766 * 181.38612 * 12 11 10 14 14 H 1.09004 * 110.88679 * 299.30128 * 13 12 11 15 15 C 1.55161 * 111.00311 * 63.17637 * 13 12 11 16 16 C 1.54329 * 102.93879 * 153.57794 * 15 13 12 17 17 N 1.47018 * 107.27289 * 337.80748 * 16 15 13 18 18 C 1.36933 * 125.64606 * 178.89978 * 17 16 15 19 19 H 1.08006 * 119.99757 * 185.16243 * 18 17 16 20 20 C 1.38811 * 120.00340 * 5.16125 * 18 17 16 21 21 N 1.31617 * 119.99729 * 5.22058 * 20 18 17 22 22 Si 1.86800 * 120.00186 * 185.21716 * 20 18 17 23 23 H 1.48496 * 109.47277 * 95.00128 * 22 20 18 24 24 H 1.48501 * 109.47337 * 215.00199 * 22 20 18 25 25 H 1.48508 * 109.47263 * 335.00063 * 22 20 18 26 26 C 1.47468 * 108.72314 * 358.97864 * 17 16 15 27 27 C 1.53040 * 109.53972 * 61.36801 * 12 11 10 28 28 C 1.46925 * 120.63330 * 356.20707 * 9 7 2 29 29 H 1.09001 * 109.46669 * 305.63534 * 1 2 3 30 30 H 1.09002 * 109.47049 * 65.63688 * 1 2 3 31 31 H 1.09001 * 109.47161 * 185.63984 * 1 2 3 32 32 H 1.09005 * 109.46431 * 175.07089 * 3 2 1 33 33 H 1.08997 * 109.47321 * 295.06488 * 3 2 1 34 34 H 1.08995 * 109.47251 * 55.07256 * 3 2 1 35 35 H 0.97003 * 119.99873 * 0.02562 * 5 4 2 36 36 H 0.96997 * 120.00223 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.58997 * 113.84156 * 10 9 7 38 38 H 1.08999 * 109.59018 * 353.41039 * 10 9 7 39 39 H 1.08992 * 109.49882 * 185.41634 * 11 10 9 40 40 H 1.08993 * 109.49709 * 65.31410 * 11 10 9 41 41 H 1.08998 * 109.45946 * 301.33850 * 12 11 10 42 42 H 1.09004 * 110.72304 * 271.93764 * 15 13 12 43 43 H 1.08997 * 110.72121 * 35.22018 * 15 13 12 44 44 H 1.08999 * 109.88017 * 97.22608 * 16 15 13 45 45 H 1.09003 * 109.88009 * 218.38797 * 16 15 13 46 46 H 0.97007 * 119.99679 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.34437 * 265.25468 * 26 17 16 48 48 H 1.08997 * 110.40926 * 142.91579 * 26 17 16 49 49 H 1.09001 * 109.49995 * 58.58231 * 27 12 11 50 50 H 1.08999 * 109.49334 * 178.68072 * 27 12 11 51 51 H 1.09000 * 109.58502 * 246.16357 * 28 9 7 52 52 H 1.09003 * 109.58118 * 6.58421 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.7067 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1192 7 6 2.0323 -0.7104 1.2304 8 8 2.6828 -0.1060 2.0565 9 7 1.7588 -2.0175 1.4127 10 6 2.3108 -2.7442 2.5642 11 6 3.0427 -3.9905 2.0560 12 6 2.0912 -4.8173 1.1881 13 6 2.8081 -6.0805 0.7068 14 1 3.6822 -5.8266 0.1071 15 6 3.1989 -6.9880 1.9031 16 6 3.2435 -8.3946 1.2696 17 7 2.4158 -8.3529 0.0553 18 6 2.2120 -9.3963 -0.8078 19 1 1.6527 -9.2421 -1.7188 20 6 2.7243 -10.6520 -0.5120 21 7 3.3163 -10.8656 0.6440 22 14 2.5733 -12.0388 -1.7543 23 1 3.8148 -12.1139 -2.5656 24 1 2.3708 -13.3243 -1.0391 25 1 1.4141 -11.7806 -2.6460 26 6 1.8427 -7.0010 -0.0807 27 6 1.6510 -3.9890 -0.0211 28 6 0.9034 -2.7428 0.4636 29 1 -0.3633 0.5988 0.8353 30 1 -0.3633 0.4239 -0.9362 31 1 -0.3633 -1.0227 0.1010 32 1 3.1264 1.4437 0.0883 33 1 1.7506 1.9302 -0.9308 34 1 1.6063 1.9812 0.8425 35 1 1.1493 0.5390 -2.5436 36 1 2.0302 -0.7070 -3.2466 37 1 1.5013 -3.0422 3.2305 38 1 3.0105 -2.1028 3.1000 39 1 3.3741 -4.5891 2.9044 40 1 3.9063 -3.6888 1.4634 41 1 1.2161 -5.0978 1.7743 42 1 4.1776 -6.7102 2.2944 43 1 2.4419 -6.9415 2.6859 44 1 4.2703 -8.6517 1.0097 45 1 2.8408 -9.1285 1.9678 46 1 3.6739 -11.7432 0.8509 47 1 0.8447 -6.9667 0.3564 48 1 1.8086 -6.7063 -1.1296 49 1 2.5278 -3.6873 -0.5942 50 1 0.9920 -4.5865 -0.6509 51 1 -0.0209 -3.0406 0.9587 52 1 0.6744 -2.1003 -0.3866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039134499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:15 Heat of formation + Delta-G solvation = -73.921889 kcal Electronic energy + Delta-G solvation = -31410.230978 eV Core-core repulsion = 27409.093366 eV Total energy + Delta-G solvation = -4001.137612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32254 -40.20954 -39.55329 -38.02041 -35.96558 -35.24099 -34.16194 -33.33846 -32.05492 -30.96711 -29.26985 -28.32323 -27.08347 -25.80270 -24.78676 -24.12609 -22.89776 -21.74577 -21.25170 -20.80363 -20.01736 -18.95289 -18.83723 -17.79439 -17.37739 -16.82175 -16.59856 -16.36456 -16.15976 -15.85020 -15.74591 -15.24958 -15.20660 -14.91417 -14.45724 -14.22888 -14.10998 -13.82160 -13.79228 -13.60723 -13.40686 -13.32931 -13.18046 -13.05770 -13.00841 -12.85682 -12.75085 -12.38245 -12.21873 -12.13797 -12.02920 -11.95201 -11.81754 -11.55569 -11.35836 -11.16194 -11.04157 -10.88784 -10.72113 -10.66574 -10.57694 -9.58988 -8.87939 -7.84091 -5.21013 1.42181 1.43886 1.46659 1.55594 1.56440 2.01327 2.49477 2.57163 3.24255 3.32654 3.63455 3.69864 3.75494 3.82063 3.84030 3.93333 4.02958 4.11937 4.20756 4.30499 4.41694 4.45826 4.48317 4.61108 4.64664 4.67065 4.72093 4.76321 4.78638 4.81297 4.85065 4.89838 4.97242 5.02618 5.06874 5.12546 5.16190 5.22926 5.25021 5.31139 5.44714 5.44784 5.58775 5.60630 5.71103 5.78041 5.96410 6.21054 6.38529 6.43962 7.09470 7.10286 7.33568 7.78984 8.44831 9.25799 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.002657 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.625378 B =10536.489875 C =11360.948643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.123 4.123 4 C 0.521 3.479 5 N -0.827 5.827 6 O -0.562 6.562 7 C 0.529 3.471 8 O -0.582 6.582 9 N -0.591 5.591 10 C 0.114 3.886 11 C -0.118 4.118 12 C -0.061 4.061 13 C -0.078 4.078 14 H 0.055 0.945 15 C -0.122 4.122 16 C 0.181 3.819 17 N -0.630 5.630 18 C -0.242 4.242 19 H 0.082 0.918 20 C -0.071 4.071 21 N -0.953 5.953 22 Si 0.980 3.020 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.264 1.264 26 C 0.142 3.858 27 C -0.126 4.126 28 C 0.112 3.888 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.418 0.582 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.075 0.925 44 H -0.009 1.009 45 H 0.017 0.983 46 H 0.246 0.754 47 H 0.027 0.973 48 H 0.036 0.964 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 28.949 -3.223 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.181 4.181 4 C 0.305 3.695 5 N -0.393 5.393 6 O -0.440 6.440 7 C 0.317 3.683 8 O -0.463 6.463 9 N -0.322 5.322 10 C -0.009 4.009 11 C -0.156 4.156 12 C -0.080 4.080 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.160 4.160 16 C 0.056 3.944 17 N -0.356 5.356 18 C -0.371 4.371 19 H 0.100 0.900 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.808 3.192 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.189 1.189 26 C 0.017 3.983 27 C -0.164 4.164 28 C -0.010 4.010 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.009 0.991 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.104 0.896 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.069 28.443 -2.564 29.964 hybrid contribution 0.562 -1.288 -0.812 1.623 sum -8.508 27.154 -3.377 28.656 Atomic orbital electron populations 1.22283 0.87740 1.04895 1.06133 1.21124 1.01061 0.98229 0.90447 1.21695 1.01029 0.90578 1.04781 1.20221 0.79913 0.83537 0.85857 1.43602 1.55091 1.33897 1.06681 1.90857 1.38857 1.27136 1.87145 1.20445 0.78798 0.81923 0.87166 1.90652 1.41989 1.66646 1.47011 1.47992 1.49181 1.08814 1.26184 1.21627 0.98643 0.92817 0.87766 1.21841 0.97954 0.95777 1.00010 1.20979 0.97897 0.92647 0.96455 1.22188 0.97604 0.93894 0.96061 0.92646 1.22754 1.01413 0.94429 0.97418 1.20930 0.92348 0.93532 0.87571 1.44865 1.55638 1.08372 1.26763 1.19501 1.29274 0.88260 1.00083 0.90020 1.25714 1.01429 0.99989 0.99220 1.70215 1.44963 1.21906 1.23121 0.85034 0.77912 0.78302 0.77957 1.21628 1.21986 1.18888 1.21723 0.95010 0.84051 0.97530 1.21953 1.01382 0.95509 0.97517 1.22111 0.92590 0.93584 0.92668 0.89876 0.87443 0.90498 0.93850 0.87875 0.90474 0.74954 0.75617 0.89490 0.90597 0.89824 0.93597 0.90184 0.90923 0.90676 0.99074 0.96438 0.94495 0.95538 0.94580 0.91435 0.90941 0.89628 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.09 71.98 0.58 -0.57 16 2 C -0.10 -1.54 0.60 -53.68 -0.03 -1.57 16 3 C -0.12 -1.51 7.74 71.98 0.56 -0.96 16 4 C 0.52 8.58 5.08 87.66 0.45 9.03 16 5 N -0.83 -5.68 8.59 -173.53 -1.49 -7.17 16 6 O -0.56 -14.81 12.56 -3.05 -0.04 -14.85 16 7 C 0.53 13.00 6.03 87.65 0.53 13.52 16 8 O -0.58 -18.43 15.38 -3.03 -0.05 -18.48 16 9 N -0.59 -13.74 2.68 -818.89 -2.20 -15.94 16 10 C 0.11 2.70 6.42 86.36 0.55 3.25 16 11 C -0.12 -3.05 5.20 30.68 0.16 -2.89 16 12 C -0.06 -1.66 1.65 -10.76 -0.02 -1.67 16 13 C -0.08 -2.79 2.56 -9.40 -0.02 -2.81 16 14 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 15 C -0.12 -4.69 5.42 31.79 0.17 -4.52 16 16 C 0.18 9.52 5.40 86.73 0.47 9.99 16 17 N -0.63 -34.17 3.40 -691.88 -2.35 -36.52 16 18 C -0.24 -14.18 10.27 84.03 0.86 -13.31 16 19 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 20 C -0.07 -4.20 5.46 84.86 0.46 -3.74 16 21 N -0.95 -59.84 10.41 21.65 0.23 -59.61 16 22 Si 0.98 47.24 29.56 68.60 2.03 49.27 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 C 0.14 5.99 5.80 86.85 0.50 6.49 16 27 C -0.13 -3.18 4.91 30.67 0.15 -3.03 16 28 C 0.11 2.20 3.88 86.36 0.33 2.53 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.07 7.41 -2.39 -0.02 0.05 16 31 H 0.08 0.66 4.93 -2.39 -0.01 0.65 16 32 H 0.04 0.77 8.00 -2.38 -0.02 0.75 16 33 H 0.10 0.42 7.43 -2.39 -0.02 0.40 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.42 -0.21 7.54 -92.71 -0.70 -0.91 16 36 H 0.41 2.61 8.93 -92.71 -0.83 1.79 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.02 7.03 -2.39 -0.02 2.00 16 39 H 0.08 2.03 7.32 -2.39 -0.02 2.02 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 42 H 0.07 2.55 8.09 -2.38 -0.02 2.54 16 43 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 44 H -0.01 -0.53 7.80 -2.39 -0.02 -0.55 16 45 H 0.02 1.03 7.10 -2.39 -0.02 1.01 16 46 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 47 H 0.03 1.09 8.03 -2.38 -0.02 1.07 16 48 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 49 H 0.07 2.08 5.93 -2.39 -0.01 2.07 16 50 H 0.07 1.80 7.32 -2.39 -0.02 1.79 16 51 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.10 1.59 3.15 -2.39 -0.01 1.58 16 Total: -1.00 -83.45 383.62 1.25 -82.20 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -0.59 Total: 11.36 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.71 Total: 9.75 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.81 Total: -119.24 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.08 Total: -33.33 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.45 1.25 -82.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039134499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.274 kcal (2) G-P(sol) polarization free energy of solvation -83.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds