Wall clock time and date at job start Tue Mar 31 2020 20:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 H 1.08998 * 109.29750 * 305.41584 * 3 2 1 5 5 C 1.53004 * 109.12142 * 185.93922 * 3 2 1 6 6 C 1.53342 * 108.62706 * 189.04324 * 5 3 2 7 7 H 1.08998 * 109.67414 * 187.27352 * 6 5 3 8 8 C 1.50701 * 109.67647 * 307.76828 * 6 5 3 9 9 O 1.21276 * 120.00058 * 94.60143 * 8 6 5 10 10 N 1.34777 * 120.00315 * 274.60723 * 8 6 5 11 11 C 1.46501 * 120.00456 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.45841 * 60.02605 * 11 10 8 13 13 C 1.53040 * 109.45934 * 179.97438 * 11 10 8 14 14 C 1.53185 * 109.31606 * 58.65431 * 13 11 10 15 15 N 1.46923 * 108.77318 * 54.63514 * 14 13 11 16 16 C 1.36933 * 120.63129 * 126.37069 * 15 14 13 17 17 H 1.08006 * 120.00221 * 331.45425 * 16 15 14 18 18 C 1.38818 * 120.00329 * 151.72933 * 16 15 14 19 19 N 1.31618 * 119.99606 * 344.66765 * 18 16 15 20 20 Si 1.86794 * 120.00123 * 164.66481 * 18 16 15 21 21 H 1.48500 * 109.47412 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47391 * 120.00223 * 20 18 16 23 23 H 1.48499 * 109.47220 * 240.00259 * 20 18 16 24 24 C 1.46929 * 118.73908 * 306.63885 * 15 14 13 25 25 C 1.52765 * 109.00629 * 53.31423 * 24 15 14 26 26 C 1.53075 * 108.45872 * 67.51926 * 6 5 3 27 27 C 1.50175 * 109.88856 * 311.08650 * 26 6 5 28 28 O 1.21280 * 118.24345 * 197.60329 * 27 26 6 29 29 N 1.33357 * 123.51113 * 17.57520 * 27 26 6 30 30 H 1.09001 * 109.47304 * 60.00696 * 1 2 3 31 31 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47631 * 299.99867 * 1 2 3 33 33 H 1.08995 * 109.47631 * 240.00132 * 2 1 3 34 34 H 1.09001 * 109.47304 * 119.99304 * 2 1 3 35 35 H 1.08997 * 109.65247 * 69.29111 * 5 3 2 36 36 H 1.08994 * 109.60442 * 308.77176 * 5 3 2 37 37 H 0.97003 * 119.99833 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47153 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.47286 * 299.97226 * 12 11 10 40 40 H 1.09000 * 109.47320 * 59.96805 * 12 11 10 41 41 H 1.09007 * 109.49614 * 298.69746 * 13 11 10 42 42 H 1.09000 * 109.51991 * 178.62499 * 13 11 10 43 43 H 1.09001 * 109.58990 * 294.84850 * 14 13 11 44 44 H 1.08995 * 109.70440 * 174.49072 * 14 13 11 45 45 H 0.97005 * 119.99822 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58688 * 173.14317 * 24 15 14 47 47 H 1.08997 * 109.58742 * 293.57081 * 24 15 14 48 48 H 1.08995 * 109.56431 * 185.54889 * 25 24 15 49 49 H 1.08998 * 109.38665 * 65.51171 * 25 24 15 50 50 H 1.08998 * 109.39438 * 71.20944 * 26 6 5 51 51 H 1.08994 * 109.40351 * 191.03909 * 26 6 5 52 52 H 0.96997 * 117.94678 * 177.77972 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5979 1.9808 -0.8384 5 6 3.5626 1.4358 -0.1496 6 6 4.0834 2.8600 0.0783 7 1 5.1483 2.9022 -0.1501 8 6 3.3358 3.8217 -0.8089 9 8 2.3669 4.4129 -0.3816 10 7 3.7437 4.0248 -2.0773 11 6 3.0166 4.9593 -2.9400 12 6 3.0434 6.3558 -2.3154 13 6 3.6819 5.0046 -4.3174 14 6 3.6845 3.5985 -4.9253 15 7 2.3077 3.0858 -4.9368 16 6 1.7461 2.6204 -6.0957 17 1 2.0679 3.0151 -7.0482 18 6 0.7592 1.6455 -6.0462 19 7 0.5718 0.9544 -4.9418 20 14 -0.3029 1.3145 -7.5467 21 1 0.1050 2.2193 -8.6513 22 1 -0.1305 -0.0974 -7.9735 23 1 -1.7280 1.5587 -7.2081 24 6 1.5429 3.0873 -3.6823 25 6 1.5661 4.4941 -3.0871 26 6 3.8561 3.2300 1.5462 27 6 2.4429 2.9099 1.9408 28 8 1.9967 3.4246 2.9443 29 7 1.6523 2.0905 1.2467 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.8309 1.1046 -1.1527 36 1 3.9996 0.7640 0.5891 37 1 4.5189 3.5522 -2.4190 38 1 2.5029 7.0514 -2.9573 39 1 2.5699 6.3241 -1.3341 40 1 4.0766 6.6868 -2.2096 41 1 4.7078 5.3585 -4.2145 42 1 3.1273 5.6811 -4.9677 43 1 4.3140 2.9419 -4.3247 44 1 4.0676 3.6397 -5.9449 45 1 -0.1181 0.2733 -4.9070 46 1 0.5123 2.7938 -3.8823 47 1 1.9941 2.3882 -2.9783 48 1 1.0860 4.4845 -2.1087 49 1 1.0309 5.1756 -3.7483 50 1 4.5443 2.6632 2.1731 51 1 4.0363 4.2962 1.6829 52 1 0.7634 1.9150 1.5931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045510473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:05 Heat of formation + Delta-G solvation = -65.825468 kcal Electronic energy + Delta-G solvation = -32864.262067 eV Core-core repulsion = 28863.475543 eV Total energy + Delta-G solvation = -4000.786525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.02285 -39.46630 -37.51176 -36.65497 -34.45045 -33.84315 -32.09381 -31.69803 -30.72373 -29.96635 -28.97818 -27.46609 -25.36499 -24.12945 -23.34378 -22.30778 -21.61746 -21.23166 -20.56031 -19.06293 -18.63074 -17.19778 -16.91422 -16.48120 -16.07574 -15.32426 -14.98108 -14.86651 -14.82968 -14.18050 -14.00530 -13.78743 -13.71479 -13.49019 -13.44992 -13.27639 -13.23705 -12.98456 -12.55915 -12.29783 -12.01017 -11.94833 -11.75402 -11.61782 -11.43657 -11.28881 -11.20142 -11.14758 -10.96110 -10.84619 -10.78032 -10.70919 -10.38620 -10.27730 -9.99784 -9.73645 -9.60248 -9.55664 -9.05510 -8.80477 -8.59434 -8.49774 -6.69347 -5.83019 -3.26338 2.86407 2.94833 3.33192 3.40678 3.42108 3.43116 3.52992 4.45135 4.47956 4.52192 4.58703 4.77667 4.97151 5.16459 5.21460 5.26752 5.31420 5.32754 5.39069 5.44875 5.48853 5.51072 5.57406 5.66014 5.70847 5.78918 5.83737 5.92477 5.99806 6.01639 6.10098 6.14565 6.16700 6.24743 6.34453 6.41601 6.43805 6.51569 6.62695 6.70917 6.78889 6.88594 6.99579 7.06904 7.38113 7.60408 7.65803 7.75746 7.88012 8.41342 8.46142 8.55711 9.17889 9.80606 10.36948 11.24590 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011935 B = 0.004797 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.533721 B = 5835.580271 C = 7389.507915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.136 3.864 4 H 0.088 0.912 5 C -0.119 4.119 6 C -0.116 4.116 7 H 0.101 0.899 8 C 0.517 3.483 9 O -0.528 6.528 10 N -0.708 5.708 11 C 0.185 3.815 12 C -0.160 4.160 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.180 3.820 25 C -0.152 4.152 26 C -0.115 4.115 27 C 0.538 3.462 28 O -0.572 6.572 29 N -0.703 5.703 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.014 0.986 44 H 0.054 0.946 45 H 0.252 0.748 46 H 0.084 0.916 47 H 0.016 0.984 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.102 0.898 51 H 0.101 0.899 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 0.896 8.754 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.031 3.969 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.137 4.137 7 H 0.119 0.881 8 C 0.302 3.698 9 O -0.404 6.404 10 N -0.359 5.359 11 C 0.100 3.900 12 C -0.218 4.218 13 C -0.177 4.177 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.544 5.544 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.054 3.946 25 C -0.192 4.192 26 C -0.155 4.155 27 C 0.325 3.675 28 O -0.452 6.452 29 N -0.355 5.355 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.231 0.769 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.034 0.966 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.225 1.503 9.465 12.629 hybrid contribution -0.491 -0.557 -1.057 1.292 sum 7.734 0.946 8.408 11.463 Atomic orbital electron populations 1.21770 0.95300 1.01940 1.02159 1.21860 0.96897 0.95250 1.02860 1.21092 0.94724 0.93874 0.87175 0.89404 1.21901 0.94952 0.94482 1.04354 1.21504 1.01564 0.95765 0.94911 0.88072 1.20242 0.84786 0.82414 0.82386 1.90681 1.26735 1.48883 1.74127 1.46106 1.32566 1.45309 1.11875 1.20247 0.93201 0.87783 0.88805 1.22221 1.01005 0.96007 1.02589 1.22335 0.99152 1.00998 0.95248 1.20850 0.88166 0.90927 0.98070 1.44031 1.08025 1.72509 1.06721 1.19200 1.18045 1.15120 0.85831 0.91868 1.25009 1.01382 0.95967 0.96997 1.70011 1.34127 1.23564 1.26699 0.86275 0.80546 0.77603 0.82635 1.20334 1.21759 1.21619 1.20602 0.98406 0.89790 0.85764 1.22518 0.93941 1.01418 1.01292 1.21464 0.94618 1.04535 0.94869 1.19716 0.87998 0.77308 0.82435 1.90711 1.75079 1.51927 1.27503 1.45464 1.17989 1.47301 1.24732 0.91431 0.92498 0.93330 0.89864 0.91855 0.88801 0.89993 0.76944 0.92395 0.90787 0.93581 0.92702 0.90830 0.96876 0.92717 0.93815 0.89824 0.96564 0.91104 0.92464 0.87992 0.88044 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.76 37.15 0.36 -1.52 16 2 C -0.13 -1.52 5.56 -26.73 -0.15 -1.67 16 3 C 0.14 1.76 2.36 -68.33 -0.16 1.60 16 4 H 0.09 1.45 6.54 -51.93 -0.34 1.11 16 5 C -0.12 -1.25 4.93 -26.55 -0.13 -1.38 16 6 C -0.12 -1.24 3.06 -91.56 -0.28 -1.52 16 7 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 8 C 0.52 7.33 5.08 -10.99 -0.06 7.27 16 9 O -0.53 -9.30 10.75 5.56 0.06 -9.24 16 10 N -0.71 -9.78 4.10 -47.57 -0.20 -9.97 16 11 C 0.18 2.91 0.66 -131.78 -0.09 2.82 16 12 C -0.16 -2.36 8.40 37.16 0.31 -2.05 16 13 C -0.14 -2.12 4.96 -26.61 -0.13 -2.25 16 14 C 0.15 2.70 6.25 -3.72 -0.02 2.68 16 15 N -0.59 -13.54 3.00 -172.58 -0.52 -14.06 16 16 C -0.25 -6.54 9.59 -15.06 -0.14 -6.68 16 17 H 0.06 1.63 7.87 -52.48 -0.41 1.22 16 18 C 0.01 0.13 4.96 -17.43 -0.09 0.05 16 19 N -0.90 -24.42 11.12 55.49 0.62 -23.81 16 20 Si 0.90 20.99 29.58 -169.99 -5.03 15.96 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.18 4.01 5.01 -3.93 -0.02 3.99 16 25 C -0.15 -2.92 4.65 -26.83 -0.12 -3.05 16 26 C -0.11 -1.34 5.22 -28.10 -0.15 -1.49 16 27 C 0.54 8.26 6.38 -11.87 -0.08 8.19 16 28 O -0.57 -11.01 17.78 5.56 0.10 -10.91 16 29 N -0.70 -9.79 4.90 -54.81 -0.27 -10.06 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.55 6.67 -51.93 -0.35 0.20 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.40 4.77 7.27 -40.82 -0.30 4.47 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.01 0.23 6.94 -51.93 -0.36 -0.13 16 44 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 45 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 46 H 0.08 2.18 6.03 -51.93 -0.31 1.87 16 47 H 0.02 0.37 7.04 -51.93 -0.37 0.01 16 48 H 0.07 1.44 6.20 -51.93 -0.32 1.12 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 52 H 0.40 5.47 7.04 -40.82 -0.29 5.19 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.60 387.32 -9.17 -40.77 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.83 Total: 10.49 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.94 Total: 4.99 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.36 Total: -57.89 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.16 Total: -20.15 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.60 -9.17 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045510473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.055 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds