Wall clock time and date at job start Tue Mar 31 2020 20:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 H 1.09006 * 109.29738 * 55.41788 * 3 2 1 5 5 C 1.52922 * 109.30194 * 175.00343 * 3 2 1 6 6 C 1.53345 * 108.67416 * 171.06760 * 5 3 2 7 7 H 1.08992 * 109.67161 * 172.73586 * 6 5 3 8 8 C 1.50695 * 109.67455 * 52.23688 * 6 5 3 9 9 O 1.21285 * 120.00015 * 263.63985 * 8 6 5 10 10 N 1.34776 * 120.00232 * 83.64041 * 8 6 5 11 11 C 1.46493 * 120.00541 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.45915 * 59.99896 * 11 10 8 13 13 C 1.53044 * 109.46036 * 300.02822 * 11 10 8 14 14 C 1.53166 * 109.32859 * 301.35724 * 13 11 10 15 15 N 1.46922 * 108.76405 * 305.35499 * 14 13 11 16 16 C 1.36938 * 120.62843 * 233.62857 * 15 14 13 17 17 H 1.08005 * 120.00318 * 150.56469 * 16 15 14 18 18 C 1.38819 * 120.00099 * 330.56713 * 16 15 14 19 19 N 1.31614 * 119.99991 * 160.49473 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 340.49799 * 18 16 15 21 21 H 1.48504 * 109.47107 * 89.99647 * 20 18 16 22 22 H 1.48505 * 109.46884 * 209.98922 * 20 18 16 23 23 H 1.48495 * 109.47160 * 329.99191 * 20 18 16 24 24 C 1.46928 * 118.74220 * 53.61098 * 15 14 13 25 25 C 1.53042 * 109.46487 * 179.97438 * 11 10 8 26 26 C 1.53070 * 108.42406 * 292.46885 * 6 5 3 27 27 C 1.50174 * 109.89314 * 48.90246 * 26 6 5 28 28 O 1.21279 * 118.24777 * 162.40055 * 27 26 6 29 29 N 1.33358 * 123.50624 * 342.41571 * 27 26 6 30 30 H 1.08998 * 109.47383 * 299.99584 * 1 2 3 31 31 H 1.09002 * 109.47868 * 60.00075 * 1 2 3 32 32 H 1.09006 * 109.46934 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47225 * 120.00240 * 2 1 3 34 34 H 1.09006 * 109.47029 * 240.00325 * 2 1 3 35 35 H 1.08996 * 109.59999 * 290.82539 * 5 3 2 36 36 H 1.09000 * 109.59894 * 51.30683 * 5 3 2 37 37 H 0.97006 * 119.99485 * 359.97438 * 10 8 6 38 38 H 1.08994 * 109.47024 * 60.00567 * 12 11 10 39 39 H 1.09007 * 109.47024 * 180.02562 * 12 11 10 40 40 H 1.08996 * 109.47037 * 300.00127 * 12 11 10 41 41 H 1.09002 * 109.49398 * 61.29244 * 13 11 10 42 42 H 1.09007 * 109.50002 * 181.38889 * 13 11 10 43 43 H 1.08998 * 109.59037 * 185.56830 * 14 13 11 44 44 H 1.09000 * 109.70394 * 65.20741 * 14 13 11 45 45 H 0.96996 * 119.99919 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.58547 * 186.60093 * 24 15 14 47 47 H 1.08993 * 109.70480 * 66.24559 * 24 15 14 48 48 H 1.08996 * 109.50180 * 178.60816 * 25 11 10 49 49 H 1.09002 * 109.49344 * 298.70183 * 25 11 10 50 50 H 1.08997 * 109.39740 * 169.03218 * 26 6 5 51 51 H 1.09004 * 109.40152 * 288.77194 * 26 6 5 52 52 H 0.97004 * 117.94229 * 182.22651 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6095 1.9768 0.8470 5 6 3.5640 1.4399 0.1257 6 6 4.0777 2.8670 -0.1000 7 1 5.1459 2.9102 0.1122 8 6 3.3417 3.8203 0.8057 9 8 2.3839 4.4362 0.3880 10 7 3.7476 3.9886 2.0798 11 6 3.0324 4.9158 2.9601 12 6 1.5745 4.4711 3.0922 13 6 3.0837 6.3252 2.3658 14 6 4.5451 6.7538 2.2026 15 7 5.2242 6.6206 3.4987 16 6 5.9034 7.6781 4.0423 17 1 5.9865 7.7726 5.1150 18 6 6.4852 8.6287 3.2147 19 7 6.7946 9.8157 3.6917 20 14 6.8288 8.2231 1.4240 21 1 5.6493 8.5878 0.5987 22 1 8.0130 8.9905 0.9611 23 1 7.0973 6.7689 1.2885 24 6 5.1603 5.3314 4.2006 25 6 3.6918 4.9188 4.3412 26 6 3.8268 3.2460 -1.5616 27 6 2.4086 2.9245 -1.9366 28 8 1.9455 3.4443 -2.9297 29 7 1.6311 2.0980 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.8481 1.1022 1.1223 36 1 3.9915 0.7743 -0.6242 37 1 4.5134 3.4958 2.4139 38 1 1.5377 3.4672 3.5151 39 1 1.0420 5.1612 3.7469 40 1 1.1049 4.4685 2.1086 41 1 2.5934 6.3275 1.3923 42 1 2.5730 7.0201 3.0326 43 1 4.5869 7.7919 1.8731 44 1 5.0349 6.1166 1.4663 45 1 7.2008 10.4800 3.1134 46 1 5.6082 5.4312 5.1894 47 1 5.6993 4.5752 3.6300 48 1 3.1754 5.6268 4.9894 49 1 3.6342 3.9200 4.7739 50 1 4.0033 4.3134 -1.6942 51 1 4.5069 2.6854 -2.2030 52 1 0.7375 1.9222 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045510477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:15 Heat of formation + Delta-G solvation = -60.038791 kcal Electronic energy + Delta-G solvation = -32321.336140 eV Core-core repulsion = 28320.800545 eV Total energy + Delta-G solvation = -4000.535595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.25301 -39.72471 -37.78340 -36.95939 -34.66343 -34.11490 -32.35868 -31.90777 -30.99213 -30.47503 -29.33152 -27.75631 -25.64363 -24.03986 -23.59621 -22.83754 -22.00649 -21.48329 -20.80960 -19.25947 -18.91537 -17.48579 -16.96583 -16.72265 -16.35034 -15.65422 -15.25554 -15.20407 -14.98802 -14.50439 -14.16655 -14.09149 -14.00986 -13.89578 -13.79563 -13.68028 -13.20935 -13.20891 -12.84068 -12.40414 -12.31612 -12.14859 -12.08833 -11.97099 -11.76662 -11.70333 -11.51508 -11.41206 -11.30513 -11.30040 -11.09298 -10.82608 -10.57473 -10.27810 -10.00936 -9.77535 -9.75611 -9.51976 -9.25398 -9.12198 -8.87048 -8.56693 -6.96341 -5.96932 -3.34870 2.66267 2.74757 3.16971 3.27759 3.34122 3.46549 3.49046 4.16672 4.22227 4.28395 4.50454 4.52000 4.70424 4.72733 4.80808 4.95420 4.98461 5.03790 5.13153 5.20925 5.24691 5.27714 5.28558 5.37648 5.42475 5.46686 5.52581 5.57786 5.67574 5.73191 5.74799 5.82766 5.86328 5.94029 5.98338 6.06906 6.13769 6.27484 6.46520 6.50297 6.53592 6.61823 6.70702 6.73281 6.81495 6.96047 7.31833 7.68007 7.96604 8.24178 8.31512 8.36038 8.92610 9.70377 10.08775 11.19115 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.003847 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.164152 B = 7276.044667 C = 8160.356496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.139 3.861 4 H 0.077 0.923 5 C -0.119 4.119 6 C -0.118 4.118 7 H 0.106 0.894 8 C 0.515 3.485 9 O -0.526 6.526 10 N -0.711 5.711 11 C 0.184 3.816 12 C -0.159 4.159 13 C -0.144 4.144 14 C 0.133 3.867 15 N -0.605 5.605 16 C -0.262 4.262 17 H 0.084 0.916 18 C 0.026 3.974 19 N -0.908 5.908 20 Si 0.885 3.115 21 H -0.287 1.287 22 H -0.304 1.304 23 H -0.274 1.274 24 C 0.149 3.851 25 C -0.138 4.138 26 C -0.118 4.118 27 C 0.540 3.460 28 O -0.563 6.563 29 N -0.709 5.709 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.397 0.603 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.020 0.980 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -23.435 -4.112 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.033 3.967 4 H 0.095 0.905 5 C -0.157 4.157 6 C -0.140 4.140 7 H 0.124 0.876 8 C 0.300 3.700 9 O -0.402 6.402 10 N -0.362 5.362 11 C 0.099 3.901 12 C -0.217 4.217 13 C -0.184 4.184 14 C 0.007 3.993 15 N -0.328 5.328 16 C -0.390 4.390 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.716 3.284 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.199 1.199 24 C 0.023 3.977 25 C -0.177 4.177 26 C -0.158 4.158 27 C 0.327 3.673 28 O -0.441 6.441 29 N -0.361 5.361 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.232 0.768 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.124 0.876 51 H 0.123 0.877 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.961 -22.475 -4.829 24.673 hybrid contribution 0.393 -0.357 -0.790 0.952 sum -8.569 -22.832 -5.619 25.026 Atomic orbital electron populations 1.21796 0.95333 1.02070 1.02151 1.21917 0.96698 0.95475 1.03151 1.21000 0.94781 0.93237 0.87664 0.90539 1.21891 0.94574 0.95049 1.04162 1.21521 1.02155 0.95221 0.95101 0.87561 1.20280 0.84637 0.82686 0.82399 1.90693 1.27603 1.47329 1.74569 1.46165 1.33739 1.44888 1.11453 1.20260 0.91011 0.89256 0.89550 1.22201 0.96028 1.00350 1.03107 1.22397 0.99585 0.94537 1.01832 1.21238 0.90343 0.99730 0.87944 1.44344 1.59303 1.08681 1.20517 1.18894 1.27616 0.99645 0.92889 0.89832 1.25315 0.98228 0.96024 0.97759 1.69818 1.45263 1.03668 1.36351 0.86927 0.76818 0.78127 0.86538 1.21500 1.23183 1.19887 1.20880 0.92325 0.87637 0.96874 1.22332 0.99530 1.01013 0.94872 1.21497 0.94231 1.05210 0.94852 1.19771 0.88162 0.77135 0.82186 1.90737 1.74284 1.51278 1.27848 1.45432 1.17897 1.47333 1.25477 0.92250 0.92705 0.92225 0.90342 0.91154 0.89179 0.89626 0.76787 0.93354 0.92094 0.90766 0.90621 0.91237 0.91214 0.96186 0.92730 0.91682 0.96478 0.90292 0.92210 0.87562 0.87708 0.76814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.75 37.16 0.36 -0.55 16 2 C -0.13 -0.75 5.58 -26.73 -0.15 -0.90 16 3 C 0.14 1.10 2.39 -68.37 -0.16 0.94 16 4 H 0.08 0.73 7.27 -51.93 -0.38 0.36 16 5 C -0.12 -0.79 4.93 -26.59 -0.13 -0.92 16 6 C -0.12 -1.13 3.06 -91.56 -0.28 -1.41 16 7 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.51 6.69 5.04 -10.99 -0.06 6.63 16 9 O -0.53 -8.64 10.87 5.55 0.06 -8.58 16 10 N -0.71 -8.91 4.10 -47.57 -0.20 -9.11 16 11 C 0.18 2.68 0.66 -131.78 -0.09 2.59 16 12 C -0.16 -2.07 8.40 37.16 0.31 -1.76 16 13 C -0.14 -2.67 4.66 -26.62 -0.12 -2.79 16 14 C 0.13 2.91 3.95 -3.73 -0.01 2.90 16 15 N -0.60 -13.75 2.74 -172.34 -0.47 -14.22 16 16 C -0.26 -7.18 10.02 -15.06 -0.15 -7.33 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 18 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 19 N -0.91 -27.85 13.97 55.49 0.78 -27.08 16 20 Si 0.89 22.69 24.35 -169.99 -4.14 18.55 16 21 H -0.29 -7.32 6.53 56.52 0.37 -6.95 16 22 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 23 H -0.27 -6.78 6.80 56.52 0.38 -6.40 16 24 C 0.15 2.62 6.24 -3.71 -0.02 2.60 16 25 C -0.14 -1.97 4.96 -26.61 -0.13 -2.10 16 26 C -0.12 -1.34 5.20 -28.10 -0.15 -1.49 16 27 C 0.54 7.46 6.39 -11.87 -0.08 7.38 16 28 O -0.56 -10.25 17.78 5.56 0.10 -10.16 16 29 N -0.71 -7.60 4.93 -54.85 -0.27 -7.87 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 6.63 -51.93 -0.34 0.00 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 37 H 0.40 4.18 7.27 -40.82 -0.30 3.88 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 41 H 0.08 1.48 6.20 -51.93 -0.32 1.15 16 42 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 43 H 0.07 1.74 4.62 -51.93 -0.24 1.50 16 44 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.02 0.28 6.94 -51.93 -0.36 -0.08 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.40 4.10 6.98 -40.82 -0.28 3.82 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -35.25 382.69 -8.16 -43.41 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.83 Total: 4.85 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.95 Total: 4.44 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.16 Total: -58.28 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.16 Total: -18.74 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.25 -8.16 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045510477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds