Wall clock time and date at job start Tue Mar 31 2020 20:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 H 1.09006 * 109.29738 * 55.41788 * 3 2 1 5 5 C 1.52922 * 109.30194 * 175.00343 * 3 2 1 6 6 C 1.53345 * 108.67416 * 171.06760 * 5 3 2 7 7 H 1.08992 * 109.67161 * 172.73586 * 6 5 3 8 8 C 1.50695 * 109.67455 * 52.23688 * 6 5 3 9 9 O 1.21285 * 120.00015 * 263.63985 * 8 6 5 10 10 N 1.34776 * 120.00232 * 83.64041 * 8 6 5 11 11 C 1.46493 * 120.00541 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.45915 * 59.99896 * 11 10 8 13 13 C 1.53044 * 109.46036 * 300.02822 * 11 10 8 14 14 C 1.53166 * 109.32859 * 301.35724 * 13 11 10 15 15 N 1.46922 * 108.76405 * 305.35499 * 14 13 11 16 16 C 1.36938 * 120.62843 * 233.62857 * 15 14 13 17 17 H 1.08005 * 120.00318 * 150.56469 * 16 15 14 18 18 C 1.38819 * 120.00099 * 330.56713 * 16 15 14 19 19 N 1.31614 * 119.99991 * 160.49473 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 340.49799 * 18 16 15 21 21 H 1.48504 * 109.47107 * 89.99647 * 20 18 16 22 22 H 1.48505 * 109.46884 * 209.98922 * 20 18 16 23 23 H 1.48495 * 109.47160 * 329.99191 * 20 18 16 24 24 C 1.46928 * 118.74220 * 53.61098 * 15 14 13 25 25 C 1.53042 * 109.46487 * 179.97438 * 11 10 8 26 26 C 1.53070 * 108.42406 * 292.46885 * 6 5 3 27 27 C 1.50174 * 109.89314 * 48.90246 * 26 6 5 28 28 O 1.21279 * 118.24777 * 162.40055 * 27 26 6 29 29 N 1.33358 * 123.50624 * 342.41571 * 27 26 6 30 30 H 1.08998 * 109.47383 * 299.99584 * 1 2 3 31 31 H 1.09002 * 109.47868 * 60.00075 * 1 2 3 32 32 H 1.09006 * 109.46934 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47225 * 120.00240 * 2 1 3 34 34 H 1.09006 * 109.47029 * 240.00325 * 2 1 3 35 35 H 1.08996 * 109.59999 * 290.82539 * 5 3 2 36 36 H 1.09000 * 109.59894 * 51.30683 * 5 3 2 37 37 H 0.97006 * 119.99485 * 359.97438 * 10 8 6 38 38 H 1.08994 * 109.47024 * 60.00567 * 12 11 10 39 39 H 1.09007 * 109.47024 * 180.02562 * 12 11 10 40 40 H 1.08996 * 109.47037 * 300.00127 * 12 11 10 41 41 H 1.09002 * 109.49398 * 61.29244 * 13 11 10 42 42 H 1.09007 * 109.50002 * 181.38889 * 13 11 10 43 43 H 1.08998 * 109.59037 * 185.56830 * 14 13 11 44 44 H 1.09000 * 109.70394 * 65.20741 * 14 13 11 45 45 H 0.96996 * 119.99919 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.58547 * 186.60093 * 24 15 14 47 47 H 1.08993 * 109.70480 * 66.24559 * 24 15 14 48 48 H 1.08996 * 109.50180 * 178.60816 * 25 11 10 49 49 H 1.09002 * 109.49344 * 298.70183 * 25 11 10 50 50 H 1.08997 * 109.39740 * 169.03218 * 26 6 5 51 51 H 1.09004 * 109.40152 * 288.77194 * 26 6 5 52 52 H 0.97004 * 117.94229 * 182.22651 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6095 1.9768 0.8470 5 6 3.5640 1.4399 0.1257 6 6 4.0777 2.8670 -0.1000 7 1 5.1459 2.9102 0.1122 8 6 3.3417 3.8203 0.8057 9 8 2.3839 4.4362 0.3880 10 7 3.7476 3.9886 2.0798 11 6 3.0324 4.9158 2.9601 12 6 1.5745 4.4711 3.0922 13 6 3.0837 6.3252 2.3658 14 6 4.5451 6.7538 2.2026 15 7 5.2242 6.6206 3.4987 16 6 5.9034 7.6781 4.0423 17 1 5.9865 7.7726 5.1150 18 6 6.4852 8.6287 3.2147 19 7 6.7946 9.8157 3.6917 20 14 6.8288 8.2231 1.4240 21 1 5.6493 8.5878 0.5987 22 1 8.0130 8.9905 0.9611 23 1 7.0973 6.7689 1.2885 24 6 5.1603 5.3314 4.2006 25 6 3.6918 4.9188 4.3412 26 6 3.8268 3.2460 -1.5616 27 6 2.4086 2.9245 -1.9366 28 8 1.9455 3.4443 -2.9297 29 7 1.6311 2.0980 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.8481 1.1022 1.1223 36 1 3.9915 0.7743 -0.6242 37 1 4.5134 3.4958 2.4139 38 1 1.5377 3.4672 3.5151 39 1 1.0420 5.1612 3.7469 40 1 1.1049 4.4685 2.1086 41 1 2.5934 6.3275 1.3923 42 1 2.5730 7.0201 3.0326 43 1 4.5869 7.7919 1.8731 44 1 5.0349 6.1166 1.4663 45 1 7.2008 10.4800 3.1134 46 1 5.6082 5.4312 5.1894 47 1 5.6993 4.5752 3.6300 48 1 3.1754 5.6268 4.9894 49 1 3.6342 3.9200 4.7739 50 1 4.0033 4.3134 -1.6942 51 1 4.5069 2.6854 -2.2030 52 1 0.7375 1.9222 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045510477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:14 Heat of formation + Delta-G solvation = -86.603889 kcal Electronic energy + Delta-G solvation = -32322.488089 eV Core-core repulsion = 28320.800545 eV Total energy + Delta-G solvation = -4001.687544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.19364 -40.85572 -39.05920 -37.87162 -36.21289 -34.89971 -33.83274 -33.04894 -32.29042 -31.98804 -29.99440 -29.28460 -26.43442 -25.70032 -24.40225 -24.38890 -22.94645 -22.52677 -21.93124 -20.36547 -20.02698 -18.84146 -18.30155 -17.66678 -17.25372 -17.21701 -16.59500 -16.26577 -16.07925 -15.83914 -15.43963 -15.26233 -15.08517 -15.04952 -14.80954 -14.61850 -14.34090 -14.26219 -14.15183 -13.67576 -13.62199 -13.48616 -13.10310 -12.98809 -12.89430 -12.80990 -12.62069 -12.54886 -12.31962 -12.18330 -12.12682 -12.02891 -11.83344 -11.71737 -11.64834 -11.42574 -11.29498 -10.79066 -10.74941 -10.37586 -10.00694 -9.93047 -8.88145 -8.19092 -5.50864 1.28591 1.34116 1.43697 1.68087 1.75439 2.24494 2.39108 2.41490 3.03994 3.36195 3.51993 3.56453 3.58928 3.77201 3.78282 3.93372 4.03596 4.09464 4.22163 4.23362 4.33697 4.44352 4.46189 4.54118 4.58969 4.65711 4.69569 4.75288 4.77948 4.84125 4.84936 4.87979 4.93578 4.94894 5.00997 5.10189 5.13692 5.14108 5.16760 5.20621 5.27937 5.36444 5.41686 5.45141 5.73531 5.87043 5.88199 6.13023 6.43233 6.72817 6.92494 7.26774 7.40891 7.62413 8.04232 9.00979 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.003847 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.164152 B = 7276.044667 C = 8160.356496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.132 3.868 4 H 0.063 0.937 5 C -0.113 4.113 6 C -0.111 4.111 7 H 0.135 0.865 8 C 0.510 3.490 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.191 3.809 12 C -0.148 4.148 13 C -0.137 4.137 14 C 0.137 3.863 15 N -0.616 5.616 16 C -0.242 4.242 17 H 0.057 0.943 18 C -0.033 4.033 19 N -0.958 5.958 20 Si 0.942 3.058 21 H -0.294 1.294 22 H -0.311 1.311 23 H -0.253 1.253 24 C 0.141 3.859 25 C -0.125 4.125 26 C -0.119 4.119 27 C 0.531 3.469 28 O -0.622 6.622 29 N -0.700 5.700 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.412 0.588 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.136 0.864 52 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 -28.221 -3.474 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C 0.028 3.972 4 H 0.081 0.919 5 C -0.150 4.150 6 C -0.132 4.132 7 H 0.153 0.847 8 C 0.297 3.703 9 O -0.444 6.444 10 N -0.356 5.356 11 C 0.105 3.895 12 C -0.206 4.206 13 C -0.177 4.177 14 C 0.012 3.988 15 N -0.341 5.341 16 C -0.372 4.372 17 H 0.075 0.925 18 C -0.228 4.228 19 N -0.604 5.604 20 Si 0.772 3.228 21 H -0.222 1.222 22 H -0.240 1.240 23 H -0.177 1.177 24 C 0.017 3.983 25 C -0.164 4.164 26 C -0.159 4.159 27 C 0.320 3.680 28 O -0.506 6.506 29 N -0.350 5.350 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.125 0.875 50 H 0.096 0.904 51 H 0.154 0.846 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.463 -27.370 -4.141 28.947 hybrid contribution 0.121 1.120 -0.898 1.440 sum -8.343 -26.251 -5.038 28.001 Atomic orbital electron populations 1.21822 0.95974 1.02524 1.01339 1.21876 0.96085 0.93786 1.04549 1.21254 0.96272 0.94166 0.85506 0.91925 1.22011 0.92944 0.93195 1.06881 1.21570 1.03318 0.95920 0.92403 0.84710 1.20955 0.84191 0.82584 0.82609 1.90700 1.29530 1.48947 1.75242 1.46034 1.34022 1.44322 1.11215 1.20068 0.92590 0.87139 0.89707 1.22072 0.94394 1.01932 1.02193 1.22272 0.96725 0.97437 1.01238 1.21115 0.92410 0.97656 0.87648 1.44463 1.58968 1.09785 1.20913 1.18894 1.25970 1.00497 0.91826 0.92536 1.25897 0.99389 0.96055 1.01449 1.69945 1.47834 1.04848 1.37782 0.85988 0.75795 0.78761 0.82209 1.22196 1.23993 1.17672 1.21177 0.95025 0.85620 0.96487 1.22214 0.96537 1.03197 0.94469 1.21524 0.93225 1.03956 0.97157 1.20290 0.89316 0.76825 0.81602 1.90700 1.75641 1.53726 1.30551 1.45523 1.17452 1.46236 1.25811 0.92792 0.93867 0.91134 0.87989 0.90552 0.85954 0.87306 0.75027 0.90370 0.92259 0.92729 0.91917 0.92814 0.95075 0.95501 0.93120 0.92036 0.93393 0.91643 0.87483 0.90445 0.84622 0.77066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.75 71.98 0.70 -0.79 16 2 C -0.13 -0.91 5.58 30.59 0.17 -0.74 16 3 C 0.13 1.66 2.39 45.11 0.11 1.77 16 4 H 0.06 1.01 7.27 -2.38 -0.02 0.99 16 5 C -0.11 -0.89 4.93 30.68 0.15 -0.74 16 6 C -0.11 -1.67 3.06 -11.40 -0.03 -1.70 16 7 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 8 C 0.51 11.81 5.04 87.66 0.44 12.25 16 9 O -0.57 -18.17 10.87 -3.05 -0.03 -18.20 16 10 N -0.70 -14.77 4.10 -422.81 -1.73 -16.51 16 11 C 0.19 5.00 0.66 3.63 0.00 5.01 16 12 C -0.15 -3.44 8.40 71.98 0.60 -2.84 16 13 C -0.14 -5.02 4.66 30.66 0.14 -4.88 16 14 C 0.14 5.92 3.95 86.35 0.34 6.26 16 15 N -0.62 -27.35 2.74 -699.15 -1.92 -29.27 16 16 C -0.24 -13.41 10.02 84.03 0.84 -12.57 16 17 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 18 C -0.03 -1.95 5.23 84.86 0.44 -1.50 16 19 N -0.96 -60.83 13.97 21.65 0.30 -60.53 16 20 Si 0.94 47.78 24.35 68.60 1.67 49.45 16 21 H -0.29 -15.05 6.53 99.48 0.65 -14.40 16 22 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 23 H -0.25 -11.76 6.80 99.48 0.68 -11.09 16 24 C 0.14 4.50 6.24 86.36 0.54 5.04 16 25 C -0.13 -3.08 4.96 30.67 0.15 -2.92 16 26 C -0.12 -2.49 5.20 29.71 0.15 -2.34 16 27 C 0.53 14.45 6.39 87.71 0.56 15.01 16 28 O -0.62 -23.53 17.78 -3.03 -0.05 -23.58 16 29 N -0.70 -14.17 4.93 -446.63 -2.20 -16.37 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.50 6.63 -2.39 -0.02 0.48 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.11 0.48 8.11 -2.39 -0.02 0.46 16 37 H 0.41 6.24 7.27 -92.70 -0.67 5.56 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.53 6.17 -2.39 -0.01 1.51 16 41 H 0.06 2.48 6.20 -2.39 -0.01 2.47 16 42 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.03 1.58 4.62 -2.39 -0.01 1.57 16 44 H 0.03 1.13 6.73 -2.39 -0.02 1.12 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.05 1.28 6.94 -2.39 -0.02 1.27 16 48 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 51 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.39 8.09 6.98 -92.71 -0.65 7.44 16 Total: -1.00 -83.29 382.69 0.88 -82.41 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.48 Total: 18.29 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 5.32 Total: 14.30 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -5.55 Total: -122.68 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.09 Total: -41.78 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Total: -83.29 0.88 -82.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045510477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.192 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds