Wall clock time and date at job start Tue Mar 31 2020 19:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 C 1.50702 * 109.46928 * 119.99943 * 2 1 3 5 5 N 1.34771 * 120.00223 * 299.99798 * 4 2 1 6 6 O 1.21279 * 119.99775 * 119.99355 * 4 2 1 7 7 C 1.50710 * 109.46850 * 239.99600 * 2 1 3 8 8 O 1.21276 * 119.99620 * 238.43520 * 7 2 1 9 9 N 1.35217 * 119.99905 * 58.44011 * 7 2 1 10 10 C 1.44483 * 118.34262 * 173.78401 * 9 7 2 11 11 C 1.54885 * 109.45991 * 269.41661 * 10 9 7 12 12 C 1.47036 * 110.20736 * 289.41967 * 11 10 9 13 13 C 1.52229 * 114.96329 * 64.43760 * 12 11 10 14 14 C 1.50262 * 111.80493 * 274.75355 * 13 12 11 15 15 C 1.53734 * 112.49822 * 321.70283 * 14 13 12 16 16 C 1.55036 * 103.85004 * 226.53293 * 15 14 13 17 17 N 1.48108 * 103.07231 * 34.58367 * 16 15 14 18 18 C 1.37066 * 127.71125 * 137.22487 * 17 16 15 19 19 H 1.08003 * 120.00181 * 343.96480 * 18 17 16 20 20 C 1.38816 * 120.00002 * 163.95507 * 18 17 16 21 21 N 1.31614 * 119.99594 * 1.93649 * 20 18 17 22 22 Si 1.86795 * 119.99927 * 181.93762 * 20 18 17 23 23 H 1.48492 * 109.47647 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47222 * 120.00330 * 22 20 18 25 25 H 1.48505 * 109.46912 * 239.99586 * 22 20 18 26 26 C 1.47994 * 104.42136 * 317.19708 * 17 16 15 27 27 C 1.47410 * 118.32479 * 353.23192 * 9 7 2 28 28 H 1.09002 * 109.47326 * 322.54313 * 1 2 3 29 29 H 1.09007 * 109.46983 * 82.53377 * 1 2 3 30 30 H 1.08999 * 109.47495 * 202.53658 * 1 2 3 31 31 H 1.09002 * 109.46980 * 170.57811 * 3 2 1 32 32 H 1.09001 * 109.46834 * 290.56924 * 3 2 1 33 33 H 1.08992 * 109.47228 * 50.57003 * 3 2 1 34 34 H 0.97005 * 119.99771 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00342 * 179.72592 * 5 4 2 36 36 H 1.08954 * 109.52261 * 29.39600 * 10 9 7 37 37 H 1.08922 * 109.58772 * 149.36138 * 10 9 7 38 38 H 1.08934 * 109.55732 * 49.76762 * 11 10 9 39 39 H 1.09041 * 109.20873 * 169.30312 * 11 10 9 40 40 H 1.09700 * 107.42956 * 184.52315 * 12 11 10 41 41 H 1.08593 * 108.38446 * 300.32431 * 12 11 10 42 42 H 1.09461 * 109.37161 * 35.84708 * 13 12 11 43 43 H 1.09605 * 109.17968 * 153.98049 * 13 12 11 44 44 H 1.08872 * 111.13948 * 343.91905 * 15 14 13 45 45 H 1.08746 * 110.86284 * 108.12134 * 15 14 13 46 46 H 1.08717 * 110.55767 * 153.30576 * 16 15 14 47 47 H 1.08895 * 110.15271 * 276.66342 * 16 15 14 48 48 H 0.96997 * 119.99866 * 179.97438 * 21 20 18 49 49 H 1.09143 * 110.23077 * 275.47765 * 26 17 16 50 50 H 1.09064 * 110.60672 * 153.31775 * 26 17 16 51 51 H 1.09133 * 108.85467 * 255.96381 * 27 9 7 52 52 H 1.09396 * 108.49385 * 13.41840 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7067 -0.2500 2.4546 6 8 2.7294 -1.6965 1.1192 7 6 2.0323 -0.7106 -1.2305 8 8 2.7527 -1.6798 -1.1194 9 7 1.6797 -0.2673 -2.4584 10 6 2.2883 -0.8880 -3.6125 11 6 3.5795 -0.1205 -3.9903 12 6 3.2421 1.1978 -4.5474 13 6 2.5565 2.1491 -3.5767 14 6 1.0703 1.9312 -3.5375 15 6 0.4849 1.6177 -4.9240 16 6 -0.7626 2.5335 -5.0159 17 7 -0.3425 3.7469 -4.2778 18 6 -0.5554 5.0555 -4.6256 19 1 -0.8464 5.3055 -5.6353 20 6 -0.3974 6.0595 -3.6802 21 7 -0.0061 5.7587 -2.4601 22 14 -0.7400 7.8374 -4.1396 23 1 -1.1625 7.9088 -5.5613 24 1 -1.8212 8.3729 -3.2738 25 1 0.4921 8.6442 -3.9487 26 6 0.3572 3.2271 -3.0819 27 6 0.6847 0.8162 -2.5518 28 1 -0.3634 0.8158 0.6250 29 1 -0.3633 0.1335 -1.0190 30 1 -0.3634 -0.9492 0.3939 31 1 3.1170 1.4470 0.1682 32 1 1.8207 1.9053 -0.9622 33 1 1.5459 2.0026 0.7937 34 1 1.1488 0.5386 2.5435 35 1 2.0267 -0.7095 3.2466 36 1 2.5366 -1.9232 -3.3807 37 1 1.5926 -0.8624 -4.4502 38 1 4.1987 0.0103 -3.1037 39 1 4.1340 -0.6950 -4.7330 40 1 4.1790 1.6663 -4.8734 41 1 2.6280 1.0494 -5.4307 42 1 2.9687 2.0032 -2.5732 43 1 2.7590 3.1823 -3.8816 44 1 1.1847 1.8830 -5.7148 45 1 0.1913 0.5729 -4.9932 46 1 -0.9895 2.7667 -6.0532 47 1 -1.6113 2.0619 -4.5228 48 1 0.1047 6.4603 -1.7995 49 1 -0.3622 2.9963 -2.2942 50 1 1.0912 3.9493 -2.7224 51 1 -0.2725 0.3906 -2.8577 52 1 0.5590 1.2585 -1.5591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045944847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:23 Heat of formation + Delta-G solvation = -22.840191 kcal Electronic energy + Delta-G solvation = -32888.837751 eV Core-core repulsion = 28889.915208 eV Total energy + Delta-G solvation = -3998.922543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29883 -39.44724 -38.02930 -35.81519 -35.58243 -33.57603 -33.07173 -32.57768 -30.92327 -28.39523 -27.60783 -27.17808 -25.84417 -25.01046 -24.27447 -22.98660 -21.67512 -20.72769 -20.00794 -18.90053 -18.17600 -17.35405 -16.86746 -16.76376 -15.99336 -15.89157 -15.38338 -15.03262 -14.79030 -14.53400 -14.24547 -14.03844 -13.78544 -13.78130 -13.45116 -13.07206 -12.96127 -12.65334 -12.56683 -12.44848 -12.14273 -11.95447 -11.88108 -11.54120 -11.33414 -11.29665 -11.22185 -10.97734 -10.89883 -10.72143 -10.46095 -10.21583 -10.05637 -9.99214 -9.90788 -9.82821 -9.72354 -9.67368 -9.53359 -9.01709 -8.72635 -8.33103 -6.87693 -5.84285 -3.19578 2.62455 2.85666 3.01287 3.33196 3.40355 3.41608 3.58871 4.30633 4.42427 4.60497 4.83085 4.83499 4.93368 5.05046 5.13588 5.21855 5.31944 5.34652 5.41978 5.48147 5.57329 5.59336 5.61590 5.66887 5.73521 5.75945 5.88384 5.88787 5.91861 5.96954 6.01181 6.11921 6.24294 6.27329 6.31290 6.35834 6.53636 6.57923 6.61329 6.73093 6.74064 6.77115 6.93262 6.98045 7.25429 7.28318 7.50143 7.53249 7.68035 8.17954 8.25381 8.45215 9.08182 9.69635 10.46339 11.28648 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004106 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.363765 B = 6818.385620 C = 8011.838318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.157 4.157 4 C 0.528 3.472 5 N -0.857 5.857 6 O -0.502 6.502 7 C 0.520 3.480 8 O -0.503 6.503 9 N -0.599 5.599 10 C 0.118 3.882 11 C -0.129 4.129 12 C -0.122 4.122 13 C -0.090 4.090 14 C -0.093 4.093 15 C -0.126 4.126 16 C 0.122 3.878 17 N -0.596 5.596 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.170 3.830 27 C 0.095 3.905 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.021 0.979 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.092 0.908 51 H 0.063 0.937 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -9.845 4.256 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.110 4.110 3 C -0.214 4.214 4 C 0.311 3.689 5 N -0.422 5.422 6 O -0.374 6.374 7 C 0.305 3.695 8 O -0.376 6.376 9 N -0.332 5.332 10 C -0.005 4.005 11 C -0.167 4.167 12 C -0.159 4.159 13 C -0.127 4.127 14 C -0.095 4.095 15 C -0.165 4.165 16 C -0.005 4.005 17 N -0.319 5.319 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.044 3.956 27 C -0.026 4.026 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.110 0.890 51 H 0.081 0.919 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.468 -10.753 4.085 11.765 hybrid contribution -0.428 1.307 0.234 1.395 sum 2.040 -9.446 4.319 10.585 Atomic orbital electron populations 1.22442 0.90726 1.03327 1.05793 1.20837 0.98831 0.98032 0.93276 1.22280 1.02027 0.91405 1.05714 1.19948 0.80149 0.84329 0.84517 1.43819 1.56732 1.33984 1.07696 1.90868 1.35590 1.24903 1.86016 1.20055 0.81073 0.84215 0.84133 1.90791 1.35774 1.25362 1.85657 1.47653 1.43519 1.36860 1.05207 1.21372 0.94357 0.96995 0.87760 1.21184 0.97575 0.96899 1.01086 1.20444 1.00465 0.95295 0.99710 1.20897 0.93718 0.99264 0.98848 1.21620 0.96013 0.96839 0.95066 1.22806 0.98947 0.98208 0.96520 1.21851 0.94009 0.88562 0.96054 1.44853 1.62936 1.00180 1.23968 1.19072 1.40610 0.80665 0.94741 0.90625 1.24875 1.01590 0.98214 0.95333 1.69834 1.52092 1.31372 1.03150 0.86095 0.77608 0.84753 0.77628 1.20460 1.21655 1.21774 1.21848 0.94878 0.90034 0.88885 1.23029 0.89844 0.87398 1.02362 0.90280 0.88822 0.91782 0.91697 0.88416 0.90563 0.77154 0.76906 0.90262 0.90648 0.92189 0.91628 0.93408 0.91421 0.92708 0.91295 0.91494 0.92710 0.93390 0.96071 0.93699 0.96569 0.89002 0.91909 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 7.82 37.16 0.29 -1.44 16 2 C -0.10 -1.31 0.59 -156.81 -0.09 -1.41 16 3 C -0.16 -1.86 7.86 37.16 0.29 -1.57 16 4 C 0.53 7.26 6.60 -10.99 -0.07 7.19 16 5 N -0.86 -7.57 8.68 31.22 0.27 -7.30 16 6 O -0.50 -9.43 15.02 -18.96 -0.28 -9.71 16 7 C 0.52 8.17 6.42 -10.78 -0.07 8.10 16 8 O -0.50 -9.87 13.55 -18.95 -0.26 -10.13 16 9 N -0.60 -8.35 2.31 -172.58 -0.40 -8.75 16 10 C 0.12 1.57 5.46 -4.12 -0.02 1.55 16 11 C -0.13 -1.67 5.75 -28.60 -0.16 -1.83 16 12 C -0.12 -1.65 4.80 -29.99 -0.14 -1.79 16 13 C -0.09 -1.40 4.31 -28.49 -0.12 -1.52 16 14 C -0.09 -1.47 0.43 -154.17 -0.07 -1.54 16 15 C -0.13 -1.97 4.66 -25.27 -0.12 -2.08 16 16 C 0.12 2.29 7.28 -2.08 -0.02 2.28 16 17 N -0.60 -13.81 3.37 -168.40 -0.57 -14.37 16 18 C -0.22 -5.79 10.37 -15.00 -0.16 -5.94 16 19 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -24.70 10.65 55.49 0.59 -24.11 16 22 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.17 3.51 4.81 -2.29 -0.01 3.50 16 27 C 0.10 1.31 2.27 -3.16 -0.01 1.30 16 28 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 29 H 0.09 1.03 4.26 -51.93 -0.22 0.81 16 30 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 31 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.10 1.30 3.57 -51.93 -0.19 1.11 16 33 H 0.08 0.72 7.61 -51.93 -0.40 0.32 16 34 H 0.40 2.45 8.35 -40.82 -0.34 2.11 16 35 H 0.40 3.03 8.93 -40.82 -0.36 2.66 16 36 H 0.08 1.12 7.16 -51.95 -0.37 0.75 16 37 H 0.08 0.91 6.72 -51.97 -0.35 0.56 16 38 H 0.06 0.88 8.14 -51.97 -0.42 0.45 16 39 H 0.07 0.75 8.15 -51.91 -0.42 0.32 16 40 H 0.05 0.63 8.18 -51.53 -0.42 0.21 16 41 H 0.07 0.90 5.43 -52.16 -0.28 0.62 16 42 H 0.05 0.85 6.35 -51.67 -0.33 0.52 16 43 H 0.07 1.24 7.71 -51.59 -0.40 0.84 16 44 H 0.07 1.07 6.23 -52.00 -0.32 0.74 16 45 H 0.05 0.74 6.48 -52.07 -0.34 0.41 16 46 H 0.05 0.88 8.12 -52.09 -0.42 0.46 16 47 H 0.02 0.39 8.13 -51.99 -0.42 -0.03 16 48 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 49 H 0.02 0.35 7.33 -51.85 -0.38 -0.03 16 50 H 0.09 2.18 5.86 -51.89 -0.30 1.87 16 51 H 0.06 0.84 7.15 -51.85 -0.37 0.47 16 52 H 0.11 1.39 2.08 -51.71 -0.11 1.28 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -33.13 371.31 -8.61 -41.74 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.96 Total: 6.57 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.57 Total: 4.61 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.10 Total: -54.53 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.54 Total: -19.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.13 -8.61 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045944847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.899 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds