Wall clock time and date at job start Tue Mar 31 2020 19:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 C 1.50702 * 109.46928 * 119.99943 * 2 1 3 5 5 N 1.34771 * 120.00223 * 299.99798 * 4 2 1 6 6 O 1.21279 * 119.99775 * 119.99355 * 4 2 1 7 7 C 1.50710 * 109.46850 * 239.99600 * 2 1 3 8 8 O 1.21276 * 119.99620 * 238.43520 * 7 2 1 9 9 N 1.35217 * 119.99905 * 58.44011 * 7 2 1 10 10 C 1.44483 * 118.34262 * 173.78401 * 9 7 2 11 11 C 1.54885 * 109.45991 * 269.41661 * 10 9 7 12 12 C 1.47036 * 110.20736 * 289.41967 * 11 10 9 13 13 C 1.52229 * 114.96329 * 64.43760 * 12 11 10 14 14 C 1.50262 * 111.80493 * 274.75355 * 13 12 11 15 15 C 1.53734 * 112.49822 * 321.70283 * 14 13 12 16 16 C 1.55036 * 103.85004 * 226.53293 * 15 14 13 17 17 N 1.48108 * 103.07231 * 34.58367 * 16 15 14 18 18 C 1.37066 * 127.71125 * 137.22487 * 17 16 15 19 19 H 1.08003 * 120.00181 * 343.96480 * 18 17 16 20 20 C 1.38816 * 120.00002 * 163.95507 * 18 17 16 21 21 N 1.31614 * 119.99594 * 1.93649 * 20 18 17 22 22 Si 1.86795 * 119.99927 * 181.93762 * 20 18 17 23 23 H 1.48492 * 109.47647 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47222 * 120.00330 * 22 20 18 25 25 H 1.48505 * 109.46912 * 239.99586 * 22 20 18 26 26 C 1.47994 * 104.42136 * 317.19708 * 17 16 15 27 27 C 1.47410 * 118.32479 * 353.23192 * 9 7 2 28 28 H 1.09002 * 109.47326 * 322.54313 * 1 2 3 29 29 H 1.09007 * 109.46983 * 82.53377 * 1 2 3 30 30 H 1.08999 * 109.47495 * 202.53658 * 1 2 3 31 31 H 1.09002 * 109.46980 * 170.57811 * 3 2 1 32 32 H 1.09001 * 109.46834 * 290.56924 * 3 2 1 33 33 H 1.08992 * 109.47228 * 50.57003 * 3 2 1 34 34 H 0.97005 * 119.99771 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00342 * 179.72592 * 5 4 2 36 36 H 1.08954 * 109.52261 * 29.39600 * 10 9 7 37 37 H 1.08922 * 109.58772 * 149.36138 * 10 9 7 38 38 H 1.08934 * 109.55732 * 49.76762 * 11 10 9 39 39 H 1.09041 * 109.20873 * 169.30312 * 11 10 9 40 40 H 1.09700 * 107.42956 * 184.52315 * 12 11 10 41 41 H 1.08593 * 108.38446 * 300.32431 * 12 11 10 42 42 H 1.09461 * 109.37161 * 35.84708 * 13 12 11 43 43 H 1.09605 * 109.17968 * 153.98049 * 13 12 11 44 44 H 1.08872 * 111.13948 * 343.91905 * 15 14 13 45 45 H 1.08746 * 110.86284 * 108.12134 * 15 14 13 46 46 H 1.08717 * 110.55767 * 153.30576 * 16 15 14 47 47 H 1.08895 * 110.15271 * 276.66342 * 16 15 14 48 48 H 0.96997 * 119.99866 * 179.97438 * 21 20 18 49 49 H 1.09143 * 110.23077 * 275.47765 * 26 17 16 50 50 H 1.09064 * 110.60672 * 153.31775 * 26 17 16 51 51 H 1.09133 * 108.85467 * 255.96381 * 27 9 7 52 52 H 1.09396 * 108.49385 * 13.41840 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7067 -0.2500 2.4546 6 8 2.7294 -1.6965 1.1192 7 6 2.0323 -0.7106 -1.2305 8 8 2.7527 -1.6798 -1.1194 9 7 1.6797 -0.2673 -2.4584 10 6 2.2883 -0.8880 -3.6125 11 6 3.5795 -0.1205 -3.9903 12 6 3.2421 1.1978 -4.5474 13 6 2.5565 2.1491 -3.5767 14 6 1.0703 1.9312 -3.5375 15 6 0.4849 1.6177 -4.9240 16 6 -0.7626 2.5335 -5.0159 17 7 -0.3425 3.7469 -4.2778 18 6 -0.5554 5.0555 -4.6256 19 1 -0.8464 5.3055 -5.6353 20 6 -0.3974 6.0595 -3.6802 21 7 -0.0061 5.7587 -2.4601 22 14 -0.7400 7.8374 -4.1396 23 1 -1.1625 7.9088 -5.5613 24 1 -1.8212 8.3729 -3.2738 25 1 0.4921 8.6442 -3.9487 26 6 0.3572 3.2271 -3.0819 27 6 0.6847 0.8162 -2.5518 28 1 -0.3634 0.8158 0.6250 29 1 -0.3633 0.1335 -1.0190 30 1 -0.3634 -0.9492 0.3939 31 1 3.1170 1.4470 0.1682 32 1 1.8207 1.9053 -0.9622 33 1 1.5459 2.0026 0.7937 34 1 1.1488 0.5386 2.5435 35 1 2.0267 -0.7095 3.2466 36 1 2.5366 -1.9232 -3.3807 37 1 1.5926 -0.8624 -4.4502 38 1 4.1987 0.0103 -3.1037 39 1 4.1340 -0.6950 -4.7330 40 1 4.1790 1.6663 -4.8734 41 1 2.6280 1.0494 -5.4307 42 1 2.9687 2.0032 -2.5732 43 1 2.7590 3.1823 -3.8816 44 1 1.1847 1.8830 -5.7148 45 1 0.1913 0.5729 -4.9932 46 1 -0.9895 2.7667 -6.0532 47 1 -1.6113 2.0619 -4.5228 48 1 0.1047 6.4603 -1.7995 49 1 -0.3622 2.9963 -2.2942 50 1 1.0912 3.9493 -2.7224 51 1 -0.2725 0.3906 -2.8577 52 1 0.5590 1.2585 -1.5591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045944847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:22 Heat of formation + Delta-G solvation = -44.640087 kcal Electronic energy + Delta-G solvation = -32889.783066 eV Core-core repulsion = 28889.915208 eV Total energy + Delta-G solvation = -3999.867857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.44826 -40.65624 -39.32470 -37.21553 -36.68516 -34.70220 -34.57382 -33.78094 -32.44984 -29.96144 -28.53108 -28.47426 -27.25647 -26.40613 -25.42607 -24.30678 -22.92390 -22.15792 -21.24434 -19.97567 -19.48860 -18.76315 -18.28414 -17.89031 -17.13435 -17.02613 -16.62585 -16.48668 -16.07829 -15.85125 -15.63252 -15.24169 -15.10595 -14.88254 -14.75058 -14.38771 -14.16555 -14.07449 -13.75594 -13.60241 -13.26765 -13.23231 -13.03881 -12.96046 -12.84417 -12.63056 -12.53590 -12.43840 -12.27427 -12.01847 -11.92718 -11.72049 -11.58457 -11.50156 -11.22608 -11.14164 -11.02706 -10.84871 -10.64220 -10.60713 -10.21289 -9.51888 -8.72281 -7.80697 -5.15850 1.49761 1.52073 1.53386 1.60154 1.70968 1.93378 2.54259 2.61595 3.23255 3.38962 3.62065 3.69769 3.80877 3.86853 3.93264 3.94884 4.01409 4.13025 4.19201 4.32623 4.42672 4.51040 4.55448 4.59522 4.66062 4.70793 4.72734 4.74800 4.76822 4.84810 4.96146 4.99203 5.05499 5.11757 5.16093 5.19741 5.26351 5.28044 5.32382 5.38768 5.46371 5.57492 5.62915 5.72099 5.81078 5.90733 5.93862 6.31627 6.35459 6.47230 7.16168 7.20712 7.41354 7.81598 8.58938 9.30769 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004106 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.363765 B = 6818.385620 C = 8011.838318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.153 4.153 4 C 0.526 3.474 5 N -0.831 5.831 6 O -0.559 6.559 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.121 4.121 12 C -0.115 4.115 13 C -0.084 4.084 14 C -0.078 4.078 15 C -0.114 4.114 16 C 0.117 3.883 17 N -0.621 5.621 18 C -0.233 4.233 19 H 0.074 0.926 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.296 1.296 26 C 0.179 3.821 27 C 0.101 3.899 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.417 0.583 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.248 0.752 49 H 0.006 0.994 50 H 0.056 0.944 51 H 0.079 0.921 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -10.261 3.951 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.106 4.106 3 C -0.210 4.210 4 C 0.309 3.691 5 N -0.396 5.396 6 O -0.436 6.436 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.324 5.324 10 C -0.009 4.009 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.122 4.122 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.009 4.009 17 N -0.345 5.345 18 C -0.362 4.362 19 H 0.091 0.909 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.794 3.206 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.052 3.948 27 C -0.020 4.020 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.024 0.976 50 H 0.075 0.925 51 H 0.097 0.903 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.385 -11.143 3.782 11.848 hybrid contribution -0.118 1.464 0.324 1.504 sum 1.267 -9.679 4.106 10.590 Atomic orbital electron populations 1.22477 0.88639 1.04684 1.06255 1.20837 1.00350 0.97693 0.91722 1.22264 1.01800 0.91016 1.05939 1.20134 0.79476 0.83661 0.85822 1.43590 1.55550 1.33934 1.06574 1.90849 1.38364 1.27500 1.86891 1.20590 0.80379 0.83789 0.85241 1.90775 1.37754 1.27400 1.86302 1.47654 1.43170 1.36356 1.05191 1.21495 0.94907 0.96487 0.88031 1.21117 0.97388 0.96736 1.00742 1.20359 1.00585 0.95016 0.99252 1.20809 0.93885 0.98187 0.99297 1.21392 0.95493 0.95285 0.95836 1.22745 0.97305 0.99222 0.95953 1.22038 0.95604 0.87509 0.95705 1.45125 1.63770 1.00557 1.25098 1.19341 1.39744 0.82397 0.94727 0.90852 1.25513 1.02284 1.01329 0.95578 1.70001 1.53165 1.31816 1.03722 0.85217 0.76859 0.80905 0.77593 1.19575 1.21951 1.22295 1.21652 0.93825 0.91129 0.88144 1.22968 0.90113 0.86764 1.02187 0.87575 0.89161 0.91419 0.92638 0.89870 0.87728 0.75168 0.75838 0.91169 0.88572 0.94264 0.89463 0.93006 0.90389 0.93037 0.94311 0.91472 0.89569 0.93233 0.95134 0.94271 0.97578 0.92547 0.90310 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 7.82 71.98 0.56 -2.46 16 2 C -0.10 -2.42 0.59 -53.67 -0.03 -2.45 16 3 C -0.15 -3.45 7.86 71.98 0.57 -2.88 16 4 C 0.53 14.02 6.60 87.66 0.58 14.60 16 5 N -0.83 -13.05 8.68 -173.54 -1.51 -14.55 16 6 O -0.56 -21.31 15.02 20.41 0.31 -21.01 16 7 C 0.51 15.88 6.42 87.59 0.56 16.44 16 8 O -0.55 -21.76 13.55 20.42 0.28 -21.48 16 9 N -0.59 -15.64 2.31 -818.06 -1.89 -17.54 16 10 C 0.11 2.80 5.46 87.40 0.48 3.28 16 11 C -0.12 -2.95 5.75 29.39 0.17 -2.78 16 12 C -0.11 -2.92 4.80 28.49 0.14 -2.78 16 13 C -0.08 -2.59 4.31 29.46 0.13 -2.46 16 14 C -0.08 -2.36 0.43 -51.96 -0.02 -2.39 16 15 C -0.11 -3.25 4.66 31.54 0.15 -3.10 16 16 C 0.12 4.18 7.28 86.77 0.63 4.81 16 17 N -0.62 -28.58 3.37 -686.70 -2.31 -30.89 16 18 C -0.23 -12.12 10.37 84.01 0.87 -11.25 16 19 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.05 -2.79 5.49 84.86 0.47 -2.33 16 21 N -0.94 -51.28 10.65 21.65 0.23 -51.05 16 22 Si 0.96 43.15 29.55 68.60 2.03 45.18 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 26 C 0.18 7.37 4.81 86.70 0.42 7.79 16 27 C 0.10 2.58 2.27 86.45 0.20 2.77 16 28 H 0.11 1.38 7.79 -2.39 -0.02 1.36 16 29 H 0.09 1.75 4.26 -2.38 -0.01 1.74 16 30 H 0.07 1.23 7.94 -2.39 -0.02 1.21 16 31 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 32 H 0.08 2.16 3.57 -2.39 -0.01 2.15 16 33 H 0.10 1.71 7.61 -2.39 -0.02 1.70 16 34 H 0.42 3.86 8.35 -92.70 -0.77 3.08 16 35 H 0.41 5.45 8.93 -92.71 -0.83 4.62 16 36 H 0.07 1.91 7.16 -2.41 -0.02 1.89 16 37 H 0.10 1.97 6.72 -2.43 -0.02 1.95 16 38 H 0.04 1.12 8.14 -2.42 -0.02 1.10 16 39 H 0.09 1.78 8.15 -2.37 -0.02 1.76 16 40 H 0.05 1.29 8.18 -2.01 -0.02 1.27 16 41 H 0.08 1.85 5.43 -2.60 -0.01 1.83 16 42 H 0.05 1.60 6.35 -2.14 -0.01 1.59 16 43 H 0.04 1.42 7.71 -2.06 -0.02 1.40 16 44 H 0.07 1.95 6.23 -2.45 -0.02 1.94 16 45 H 0.09 1.97 6.48 -2.52 -0.02 1.95 16 46 H 0.05 1.74 8.12 -2.54 -0.02 1.71 16 47 H 0.03 1.05 8.13 -2.44 -0.02 1.03 16 48 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 49 H 0.01 0.27 7.33 -2.31 -0.02 0.25 16 50 H 0.06 2.74 5.86 -2.35 -0.01 2.73 16 51 H 0.08 1.83 7.15 -2.32 -0.02 1.82 16 52 H 0.11 2.76 2.08 -2.18 0.00 2.76 16 Total: -1.00 -74.48 371.31 2.36 -72.12 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.63 Total: 24.41 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 5.86 Total: 14.81 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -5.48 Total: -114.03 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: 0.58 Total: -42.49 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.48 2.36 -72.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045944847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.482 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds