Wall clock time and date at job start Tue Mar 31 2020 19:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46852 * 2 1 4 4 C 1.50704 * 109.47196 * 120.00023 * 2 1 3 5 5 N 1.34785 * 119.99793 * 300.00167 * 4 2 1 6 6 O 1.21274 * 119.99959 * 119.99907 * 4 2 1 7 7 C 1.50697 * 109.47163 * 240.00013 * 2 1 3 8 8 O 1.21283 * 119.99744 * 232.09866 * 7 2 1 9 9 N 1.34775 * 120.00210 * 52.10185 * 7 2 1 10 10 C 1.47570 * 118.63917 * 1.50467 * 9 7 2 11 11 C 1.54289 * 111.97151 * 137.76471 * 10 9 7 12 12 C 1.50891 * 110.39247 * 319.64930 * 11 10 9 13 13 C 1.52615 * 109.39199 * 91.69565 * 12 11 10 14 14 C 1.47114 * 114.20461 * 275.35325 * 13 12 11 15 15 C 1.54183 * 112.43299 * 184.05312 * 14 13 12 16 16 C 1.54381 * 104.96624 * 121.93098 * 15 14 13 17 17 N 1.48200 * 104.60023 * 23.97534 * 16 15 14 18 18 C 1.36929 * 127.83336 * 140.39009 * 17 16 15 19 19 H 1.08001 * 120.00065 * 335.33024 * 18 17 16 20 20 C 1.38815 * 120.00106 * 155.33452 * 18 17 16 21 21 N 1.31617 * 119.99850 * 158.06534 * 20 18 17 22 22 Si 1.86798 * 120.00055 * 338.06858 * 20 18 17 23 23 H 1.48497 * 109.47411 * 84.70032 * 22 20 18 24 24 H 1.48500 * 109.47272 * 204.70124 * 22 20 18 25 25 H 1.48508 * 109.46870 * 324.70026 * 22 20 18 26 26 C 1.48085 * 104.33491 * 320.42199 * 17 16 15 27 27 C 1.44588 * 118.64246 * 181.77635 * 9 7 2 28 28 H 1.09004 * 109.46448 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47141 * 60.00319 * 1 2 3 30 30 H 1.08999 * 109.47052 * 299.99706 * 1 2 3 31 31 H 1.09003 * 109.47015 * 46.28820 * 3 2 1 32 32 H 1.09007 * 109.47003 * 166.28417 * 3 2 1 33 33 H 1.08994 * 109.47159 * 286.28649 * 3 2 1 34 34 H 0.97001 * 119.99921 * 0.02562 * 5 4 2 35 35 H 0.96996 * 119.99316 * 180.02562 * 5 4 2 36 36 H 1.09001 * 108.94225 * 258.58630 * 10 9 7 37 37 H 1.09001 * 108.93795 * 17.18907 * 10 9 7 38 38 H 1.09001 * 109.33970 * 199.31500 * 11 10 9 39 39 H 1.08997 * 109.18681 * 79.88259 * 11 10 9 40 40 H 1.09000 * 109.48532 * 331.71787 * 12 11 10 41 41 H 1.09000 * 109.49605 * 211.68379 * 12 11 10 42 42 H 1.09008 * 108.53794 * 154.13729 * 13 12 11 43 43 H 1.09000 * 108.53766 * 36.58061 * 13 12 11 44 44 H 1.09004 * 110.34698 * 240.80019 * 15 14 13 45 45 H 1.09006 * 110.34557 * 3.05932 * 15 14 13 46 46 H 1.09001 * 110.41159 * 142.75321 * 16 15 14 47 47 H 1.08994 * 110.41331 * 265.07764 * 16 15 14 48 48 H 0.97006 * 119.99912 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.40604 * 280.66229 * 26 17 16 50 50 H 1.09001 * 110.40513 * 158.24182 * 26 17 16 51 51 H 1.09002 * 109.47483 * 30.56233 * 27 9 7 52 52 H 1.09002 * 109.47413 * 150.57538 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7067 -0.2499 2.4547 6 8 2.7296 -1.6965 1.1192 7 6 2.0324 -0.7104 -1.2304 8 8 2.8428 -1.6065 -1.1249 9 7 1.5811 -0.3499 -2.4482 10 6 0.6209 0.7665 -2.5447 11 6 0.9474 1.7086 -3.7221 12 6 2.4376 1.9199 -3.8287 13 6 3.0298 0.8823 -4.7784 14 6 3.3414 -0.4079 -4.1438 15 6 4.0281 -1.3901 -5.1139 16 6 5.3732 -1.7395 -4.4416 17 7 5.1465 -1.4869 -2.9989 18 6 5.5915 -2.2274 -1.9366 19 1 5.8205 -3.2748 -2.0665 20 6 5.7481 -1.6319 -0.6925 21 7 5.7483 -2.3719 0.3960 22 14 5.9584 0.2197 -0.5631 23 1 4.6236 0.8703 -0.5552 24 1 6.6773 0.5497 0.6937 25 1 6.7418 0.7113 -1.7251 26 6 4.3289 -0.2526 -2.9669 27 6 2.0532 -1.0769 -3.6054 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.4915 2.0217 0.7428 32 1 3.1024 1.4523 0.2437 33 1 1.8893 1.8811 -0.9864 34 1 1.1487 0.5385 2.5436 35 1 2.0304 -0.7070 3.2466 36 1 -0.3817 0.3603 -2.6792 37 1 0.6477 1.3374 -1.6165 38 1 0.4570 2.6689 -3.5627 39 1 0.5783 1.2666 -4.6475 40 1 2.8915 1.8121 -2.8436 41 1 2.6366 2.9202 -4.2132 42 1 3.9464 1.2879 -5.2069 43 1 2.3205 0.7083 -5.5875 44 1 3.4217 -2.2875 -5.2370 45 1 4.1995 -0.9124 -6.0786 46 1 5.6212 -2.7875 -4.6096 47 1 6.1667 -1.0962 -4.8218 48 1 5.8581 -1.9558 1.2653 49 1 4.9592 0.6246 -3.1129 50 1 3.7874 -0.1798 -2.0236 51 1 2.2693 -2.1075 -3.3238 52 1 1.2862 -1.0650 -4.3798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045944849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:26 Heat of formation + Delta-G solvation = 11.829473 kcal Electronic energy + Delta-G solvation = -34765.734223 eV Core-core repulsion = 30768.315070 eV Total energy + Delta-G solvation = -3997.419154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.14797 -39.19044 -37.34588 -36.26089 -34.71702 -33.12416 -32.74485 -32.31629 -30.80534 -28.79767 -27.48324 -26.69019 -25.92138 -24.86330 -23.99926 -22.84335 -21.26718 -20.25534 -19.94440 -18.91815 -18.26144 -17.06278 -16.63520 -16.24933 -15.88836 -15.31353 -15.13122 -14.94978 -14.62836 -14.43467 -14.03689 -13.82688 -13.60224 -13.42478 -13.13308 -13.05021 -12.92319 -12.42383 -12.29698 -12.08928 -12.04933 -11.91353 -11.81768 -11.64320 -11.52771 -11.23300 -11.12323 -10.80642 -10.62255 -10.43660 -10.30018 -10.18188 -10.09254 -9.94663 -9.74245 -9.40602 -9.26646 -9.13319 -9.09851 -8.42665 -8.16609 -7.91980 -6.57381 -5.46471 -2.74054 3.19913 3.35633 3.44904 3.52155 3.65646 3.72256 3.97910 4.58590 4.70722 4.84010 4.91860 4.95313 5.07386 5.12665 5.14764 5.19267 5.26708 5.37297 5.44042 5.52108 5.59492 5.62838 5.63863 5.70853 5.76558 5.79709 5.86031 5.91385 5.98333 6.04594 6.07611 6.12493 6.17718 6.26822 6.28507 6.33378 6.45185 6.48499 6.63243 6.71167 6.84407 7.00782 7.05771 7.14992 7.23202 7.24311 7.71611 7.93099 8.13852 8.76739 8.86445 9.08520 9.25012 10.18782 10.72271 11.70890 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.008957 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.176695 B = 3125.411977 C = 4754.357607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C -0.159 4.159 4 C 0.503 3.497 5 N -0.867 5.867 6 O -0.442 6.442 7 C 0.483 3.517 8 O -0.397 6.397 9 N -0.614 5.614 10 C 0.087 3.913 11 C -0.131 4.131 12 C -0.119 4.119 13 C -0.093 4.093 14 C -0.096 4.096 15 C -0.119 4.119 16 C 0.123 3.877 17 N -0.590 5.590 18 C -0.231 4.231 19 H 0.079 0.921 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.861 3.139 23 H -0.283 1.283 24 H -0.313 1.313 25 H -0.287 1.287 26 C 0.116 3.884 27 C 0.143 3.857 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.390 0.610 35 H 0.399 0.601 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.003 0.997 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 12.140 -4.612 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.108 4.108 3 C -0.216 4.216 4 C 0.283 3.717 5 N -0.435 5.435 6 O -0.309 6.309 7 C 0.266 3.734 8 O -0.261 6.261 9 N -0.352 5.352 10 C -0.035 4.035 11 C -0.169 4.169 12 C -0.157 4.157 13 C -0.131 4.131 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.003 4.003 17 N -0.314 5.314 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.694 3.306 23 H -0.211 1.211 24 H -0.242 1.242 25 H -0.213 1.213 26 C -0.010 4.010 27 C 0.019 3.981 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.229 0.771 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.020 0.980 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.343 10.764 -4.529 19.281 hybrid contribution -0.091 1.711 0.486 1.781 sum -15.434 12.476 -4.043 20.253 Atomic orbital electron populations 1.22416 0.91872 1.03595 1.03865 1.20800 0.97731 0.97420 0.94862 1.22276 1.03414 0.92629 1.03286 1.19964 0.81622 0.85820 0.84244 1.43827 1.57529 1.34146 1.07984 1.91158 1.31635 1.23008 1.85057 1.19929 0.83583 0.86238 0.83637 1.91305 1.25398 1.25560 1.83825 1.47589 1.46689 1.34494 1.06449 1.22657 0.91961 0.88780 1.00132 1.21855 0.97152 0.99019 0.98881 1.21090 0.95055 0.98344 1.01191 1.20353 1.00305 0.94819 0.97594 1.21083 0.96805 0.94467 0.97513 1.22562 0.98427 0.98079 0.96786 1.21664 0.93462 0.98444 0.86733 1.45063 1.57609 1.28123 1.00578 1.18231 1.40117 0.91472 0.85999 0.90346 1.24788 0.98736 0.95213 0.95062 1.69796 1.51270 1.34170 0.96845 0.87230 0.77225 0.91046 0.75131 1.21130 1.24153 1.21347 1.22322 0.91379 0.89456 0.97849 1.21456 0.93698 0.96714 0.86184 0.91731 0.89269 0.91753 0.91471 0.90622 0.90295 0.78334 0.77052 0.92338 0.88380 0.91252 0.91632 0.91338 0.92297 0.92764 0.92787 0.92051 0.92656 0.93182 0.96488 0.93600 0.97955 0.89218 0.89417 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 7.87 37.16 0.29 -1.46 16 2 C -0.10 -1.60 0.59 -156.81 -0.09 -1.69 16 3 C -0.16 -2.21 7.88 37.16 0.29 -1.92 16 4 C 0.50 9.48 6.69 -10.98 -0.07 9.40 16 5 N -0.87 -11.44 8.67 31.22 0.27 -11.17 16 6 O -0.44 -11.36 15.05 -18.89 -0.28 -11.64 16 7 C 0.48 9.56 4.50 -10.99 -0.05 9.51 16 8 O -0.40 -10.28 9.39 -18.89 -0.18 -10.46 16 9 N -0.61 -9.82 1.99 -172.37 -0.34 -10.17 16 10 C 0.09 0.96 3.71 -2.78 -0.01 0.95 16 11 C -0.13 -1.29 5.70 -27.12 -0.15 -1.45 16 12 C -0.12 -1.52 5.45 -27.99 -0.15 -1.67 16 13 C -0.09 -1.33 3.83 -29.75 -0.11 -1.44 16 14 C -0.10 -1.70 0.68 -155.01 -0.10 -1.80 16 15 C -0.12 -2.08 6.24 -25.39 -0.16 -2.24 16 16 C 0.12 2.69 7.24 -2.38 -0.02 2.67 16 17 N -0.59 -15.57 3.01 -168.85 -0.51 -16.08 16 18 C -0.23 -7.19 9.65 -15.06 -0.15 -7.33 16 19 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.06 1.99 4.31 -17.43 -0.08 1.91 16 21 N -0.88 -29.45 13.97 55.49 0.78 -28.67 16 22 Si 0.86 24.47 24.71 -169.99 -4.20 20.27 16 23 H -0.28 -7.42 4.25 56.52 0.24 -7.18 16 24 H -0.31 -9.09 7.11 56.52 0.40 -8.69 16 25 H -0.29 -8.28 7.00 56.52 0.40 -7.89 16 26 C 0.12 2.68 1.89 -2.42 0.00 2.68 16 27 C 0.14 2.42 4.22 -4.10 -0.02 2.41 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.79 3.82 -51.93 -0.20 0.60 16 30 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 31 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 32 H 0.07 1.36 5.86 -51.92 -0.30 1.06 16 33 H 0.08 1.00 4.34 -51.93 -0.23 0.77 16 34 H 0.39 3.54 8.00 -40.82 -0.33 3.22 16 35 H 0.40 5.05 8.93 -40.82 -0.36 4.69 16 36 H 0.06 0.54 7.52 -51.93 -0.39 0.15 16 37 H 0.10 0.99 2.68 -51.93 -0.14 0.85 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.61 7.33 -51.93 -0.38 0.23 16 40 H 0.07 1.07 5.40 -51.93 -0.28 0.79 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 43 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 44 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 45 H 0.05 0.82 7.79 -51.93 -0.40 0.42 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 8.33 8.31 -40.82 -0.34 7.99 16 49 H 0.00 0.07 6.83 -51.93 -0.35 -0.28 16 50 H 0.09 2.17 1.53 -51.93 -0.08 2.09 16 51 H 0.09 1.83 7.11 -51.93 -0.37 1.46 16 52 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -40.44 356.44 -7.76 -48.20 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.08 Total: 5.84 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -0.58 Total: 8.51 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 0.19 Total: -66.09 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.46 Total: -22.11 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.20 Total: 20.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -40.44 -7.76 -48.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045944849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.030 kcal (2) G-P(sol) polarization free energy of solvation -40.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds