Wall clock time and date at job start Tue Mar 31 2020 19:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 H 1.08997 * 109.99758 * 306.43652 * 3 2 1 5 5 C 1.54318 * 109.77306 * 67.59183 * 3 2 1 6 6 C 1.55160 * 102.86305 * 141.88306 * 5 3 2 7 7 C 1.54912 * 101.58138 * 324.30388 * 6 5 3 8 8 N 1.47020 * 109.88068 * 185.33799 * 3 2 1 9 9 C 1.34776 * 125.64925 * 61.68409 * 8 3 2 10 10 O 1.21352 * 119.99793 * 4.73777 * 9 8 3 11 11 C 1.49450 * 120.00305 * 184.74378 * 9 8 3 12 12 O 1.21352 * 119.99902 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99888 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99977 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.51064 * 325.05741 * 14 13 11 16 16 C 1.52562 * 109.49498 * 204.99886 * 14 13 11 17 17 C 1.47097 * 114.32990 * 155.01725 * 16 14 13 18 18 C 1.54863 * 110.17635 * 62.88820 * 17 16 14 19 19 N 1.44659 * 109.56239 * 288.46802 * 18 17 16 20 20 C 1.36926 * 118.81753 * 270.95388 * 19 18 17 21 21 H 1.08008 * 120.00478 * 27.85211 * 20 19 18 22 22 C 1.38814 * 120.00220 * 207.85043 * 20 19 18 23 23 N 1.31614 * 120.00223 * 11.65855 * 22 20 19 24 24 Si 1.86806 * 120.00003 * 191.65913 * 22 20 19 25 25 H 1.48498 * 109.47046 * 90.00219 * 24 22 20 26 26 H 1.48504 * 109.46766 * 210.00130 * 24 22 20 27 27 H 1.48500 * 109.47120 * 329.99960 * 24 22 20 28 28 C 1.47605 * 122.53954 * 90.96303 * 19 18 17 29 29 C 1.50880 * 109.49116 * 85.11676 * 14 13 11 30 30 H 1.08997 * 109.47107 * 64.17854 * 1 2 3 31 31 H 1.08994 * 109.47480 * 184.18384 * 1 2 3 32 32 H 1.09008 * 109.46958 * 304.18235 * 1 2 3 33 33 H 1.08997 * 109.46711 * 240.00063 * 2 1 3 34 34 H 1.09004 * 109.46994 * 120.00270 * 2 1 3 35 35 H 1.09003 * 110.92661 * 23.46908 * 5 3 2 36 36 H 1.09000 * 110.59297 * 260.14338 * 5 3 2 37 37 H 1.09000 * 111.00504 * 206.23140 * 6 5 3 38 38 H 1.09001 * 111.00359 * 82.37983 * 6 5 3 39 39 H 1.09003 * 110.36764 * 278.16858 * 7 6 5 40 40 H 1.09001 * 110.36505 * 155.84869 * 7 6 5 41 41 H 0.96999 * 120.00451 * 359.97438 * 13 11 9 42 42 H 1.09002 * 108.51333 * 33.76264 * 16 14 13 43 43 H 1.09000 * 108.39096 * 276.18536 * 16 14 13 44 44 H 1.09002 * 109.32417 * 183.05780 * 17 16 14 45 45 H 1.08994 * 109.32706 * 302.70955 * 17 16 14 46 46 H 1.09000 * 109.45424 * 48.69238 * 18 17 16 47 47 H 1.09005 * 109.44784 * 168.60858 * 18 17 16 48 48 H 0.96998 * 120.00755 * 179.97438 * 23 22 20 49 49 H 1.08997 * 108.95030 * 197.17748 * 28 19 18 50 50 H 1.08999 * 108.95088 * 78.54652 * 28 19 18 51 51 H 1.09008 * 109.36895 * 332.04510 * 29 14 13 52 52 H 1.08997 * 109.37067 * 91.66464 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5907 1.9967 -0.8240 5 6 1.6921 2.1192 1.3425 6 6 2.9461 2.9876 1.6268 7 6 4.0792 2.0887 1.0720 8 7 3.5045 1.4549 -0.1286 9 6 4.2054 0.9723 -1.1737 10 8 3.6236 0.5527 -2.1526 11 6 5.6991 0.9537 -1.1272 12 8 6.2809 1.3736 -0.1485 13 7 6.3998 0.4706 -2.1721 14 6 7.8640 0.4528 -2.1267 15 1 8.2221 1.3286 -1.5856 16 6 8.4177 0.4713 -3.5482 17 6 9.7762 1.0238 -3.6623 18 6 10.7779 0.1462 -2.8719 19 7 10.5654 0.3273 -1.4525 20 6 11.2430 1.3262 -0.8059 21 1 11.5465 2.2106 -1.3464 22 6 11.5398 1.2022 0.5445 23 7 11.3805 0.0444 1.1497 24 14 12.1654 2.6787 1.5027 25 1 11.0141 3.4192 2.0782 26 1 13.0547 2.2168 2.5986 27 1 12.9247 3.5736 0.5929 28 6 9.6457 -0.5237 -0.6724 29 6 8.3308 -0.7984 -1.4246 30 1 -0.3633 0.4476 -0.9250 31 1 -0.3634 -1.0248 0.0750 32 1 -0.3633 0.5774 0.8502 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5513 1.3765 2.1279 36 1 0.8055 2.7446 1.2382 37 1 3.0699 3.1568 2.6964 38 1 2.8973 3.9330 1.0864 39 1 4.3559 1.3311 1.8053 40 1 4.9460 2.6929 0.8041 41 1 5.9348 0.1346 -2.9543 42 1 7.7494 1.0646 -4.1723 43 1 8.4268 -0.5506 -3.9271 44 1 10.0685 1.0487 -4.7121 45 1 9.7886 2.0368 -3.2602 46 1 10.6279 -0.9012 -3.1336 47 1 11.7965 0.4408 -3.1246 48 1 11.5883 -0.0425 2.0932 49 1 9.4169 -0.0264 0.2701 50 1 10.1367 -1.4733 -0.4596 51 1 7.5688 -1.1202 -0.7146 52 1 8.4929 -1.5865 -2.1599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052850033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:59 Heat of formation + Delta-G solvation = -49.208963 kcal Electronic energy + Delta-G solvation = -31058.411264 eV Core-core repulsion = 27058.345285 eV Total energy + Delta-G solvation = -4000.065979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.84545 -39.30312 -37.81047 -37.42004 -34.78275 -33.69495 -32.86448 -31.74083 -30.95911 -30.40300 -28.11902 -26.38094 -25.41351 -24.06665 -23.34283 -22.91296 -22.09060 -20.78741 -20.25609 -19.31855 -19.20476 -17.55183 -17.08911 -16.57624 -16.29739 -15.67988 -15.37017 -14.96671 -14.87019 -14.52657 -14.15951 -13.92739 -13.78944 -13.58544 -13.48050 -13.25173 -13.16524 -12.88745 -12.59394 -12.41532 -12.35589 -11.89779 -11.88641 -11.68642 -11.62040 -11.47689 -11.15199 -11.05688 -10.97093 -10.83249 -10.77005 -10.70835 -10.36926 -10.20084 -10.05608 -9.92697 -9.67251 -9.57722 -9.24855 -8.92325 -8.75887 -8.32438 -6.59100 -5.70774 -3.17477 1.58626 2.35960 3.38218 3.43272 3.49747 3.49904 3.57511 4.26323 4.33056 4.53741 4.55811 4.62212 4.88632 4.91609 5.02221 5.13080 5.14996 5.24844 5.30741 5.40743 5.48066 5.51464 5.56811 5.64228 5.69637 5.74871 5.76840 5.79079 5.88585 5.94017 5.99797 6.01669 6.10830 6.19175 6.23395 6.28770 6.43510 6.51097 6.57480 6.65978 6.77354 6.85542 6.94590 7.06114 7.14698 7.44235 7.51955 7.79704 7.85148 7.90109 8.25722 8.55246 9.31111 9.97095 10.42421 11.36387 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.003229 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.783000 B = 8669.794473 C = 9988.679775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.099 3.901 8 N -0.590 5.590 9 C 0.523 3.477 10 O -0.527 6.527 11 C 0.501 3.499 12 O -0.504 6.504 13 N -0.696 5.696 14 C 0.153 3.847 15 H 0.106 0.894 16 C -0.108 4.108 17 C -0.145 4.145 18 C 0.155 3.845 19 N -0.592 5.592 20 C -0.257 4.257 21 H 0.064 0.936 22 C 0.007 3.993 23 N -0.905 5.905 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.183 3.817 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.403 0.597 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.046 0.954 48 H 0.253 0.747 49 H 0.081 0.919 50 H 0.026 0.974 51 H 0.055 0.945 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 1.752 -2.945 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.176 4.176 7 C -0.023 4.023 8 N -0.324 5.324 9 C 0.306 3.694 10 O -0.404 6.404 11 C 0.281 3.719 12 O -0.378 6.378 13 N -0.348 5.348 14 C 0.050 3.950 15 H 0.124 0.876 16 C -0.146 4.146 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.313 5.313 20 C -0.387 4.387 21 H 0.082 0.918 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.058 3.942 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.238 0.762 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.044 0.956 51 H 0.074 0.926 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.826 1.728 -2.648 20.077 hybrid contribution 0.021 0.499 0.201 0.538 sum -19.806 2.227 -2.447 20.080 Atomic orbital electron populations 1.21707 0.94913 1.01937 1.01877 1.21905 0.96355 0.96017 1.03251 1.21743 0.79596 0.96957 0.98410 0.90280 1.22752 0.98513 0.99241 0.96014 1.22876 0.94202 0.98392 1.02082 1.22626 0.97080 0.96422 0.86172 1.48362 1.07136 1.57807 1.19117 1.20113 0.88510 0.78623 0.82146 1.90716 1.71507 1.46705 1.31435 1.19882 0.87487 0.80106 0.84439 1.90809 1.70768 1.44871 1.31397 1.46148 1.08427 1.61504 1.18721 1.20695 0.75392 1.01621 0.97263 0.87580 1.20580 0.97949 1.01146 0.94885 1.21449 0.95682 1.01849 0.99597 1.20731 0.95781 0.95524 0.85261 1.43691 1.47201 1.37551 1.02896 1.19180 1.30511 0.96190 0.92834 0.91790 1.25070 0.99487 0.96287 0.98334 1.70022 1.52451 1.22027 1.10447 0.86305 0.78336 0.82412 0.79779 1.21383 1.21817 1.20531 1.20970 0.84819 0.94609 0.93825 1.22483 1.00809 0.95878 0.99635 0.92584 0.92454 0.92504 0.90636 0.91644 0.90147 0.89952 0.89480 0.90557 0.90629 0.88235 0.76210 0.93192 0.92562 0.92861 0.91880 0.94881 0.93566 0.93724 0.90095 0.95598 0.92647 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.82 37.16 0.36 -0.71 16 2 C -0.14 -1.34 5.41 -26.73 -0.14 -1.48 16 3 C 0.14 1.36 2.87 -66.96 -0.19 1.17 16 4 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.13 -0.93 5.55 -24.90 -0.14 -1.07 16 6 C -0.14 -1.12 7.08 -24.58 -0.17 -1.29 16 7 C 0.10 1.16 5.89 -2.53 -0.01 1.15 16 8 N -0.59 -7.55 3.07 -163.52 -0.50 -8.05 16 9 C 0.52 7.94 7.64 -11.59 -0.09 7.85 16 10 O -0.53 -8.53 15.64 5.49 0.09 -8.44 16 11 C 0.50 8.48 7.67 -11.59 -0.09 8.39 16 12 O -0.50 -9.87 13.57 5.49 0.07 -9.80 16 13 N -0.70 -11.05 4.92 -55.50 -0.27 -11.33 16 14 C 0.15 2.76 2.06 -69.22 -0.14 2.61 16 15 H 0.11 2.34 6.92 -51.93 -0.36 1.98 16 16 C -0.11 -1.69 4.69 -29.79 -0.14 -1.83 16 17 C -0.14 -2.48 5.75 -28.58 -0.16 -2.64 16 18 C 0.16 3.16 5.65 -4.04 -0.02 3.13 16 19 N -0.59 -14.50 2.27 -172.03 -0.39 -14.90 16 20 C -0.26 -7.00 9.46 -15.06 -0.14 -7.14 16 21 H 0.06 1.72 7.86 -52.48 -0.41 1.31 16 22 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 23 N -0.91 -26.41 10.85 55.49 0.60 -25.81 16 24 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.18 4.43 4.64 -2.94 -0.01 4.42 16 29 C -0.15 -2.88 5.38 -27.30 -0.15 -3.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.34 7.37 -51.92 -0.38 -0.04 16 33 H 0.07 0.92 6.87 -51.93 -0.36 0.56 16 34 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.37 6.48 -51.93 -0.34 1.03 16 41 H 0.40 5.58 8.07 -40.82 -0.33 5.25 16 42 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 43 H 0.06 0.82 7.34 -51.93 -0.38 0.44 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.03 0.64 8.05 -51.93 -0.42 0.22 16 47 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 49 H 0.08 2.25 6.31 -51.93 -0.33 1.92 16 50 H 0.03 0.68 8.02 -51.93 -0.42 0.26 16 51 H 0.05 1.09 7.85 -51.92 -0.41 0.68 16 52 H 0.05 0.86 7.31 -51.93 -0.38 0.48 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -31.07 397.59 -9.87 -40.94 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -9.10 Total: 4.69 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.34 Total: 9.63 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.56 Total: -60.08 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.16 Total: -18.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.07 -9.87 -40.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052850033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.267 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds