Wall clock time and date at job start Tue Mar 31 2020 19:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 H 1.08997 * 109.99758 * 306.43652 * 3 2 1 5 5 C 1.54318 * 109.77306 * 67.59183 * 3 2 1 6 6 C 1.55160 * 102.86305 * 141.88306 * 5 3 2 7 7 C 1.54912 * 101.58138 * 324.30388 * 6 5 3 8 8 N 1.47020 * 109.88068 * 185.33799 * 3 2 1 9 9 C 1.34776 * 125.64925 * 61.68409 * 8 3 2 10 10 O 1.21352 * 119.99793 * 4.73777 * 9 8 3 11 11 C 1.49450 * 120.00305 * 184.74378 * 9 8 3 12 12 O 1.21352 * 119.99902 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99888 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99977 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.51064 * 325.05741 * 14 13 11 16 16 C 1.52562 * 109.49498 * 204.99886 * 14 13 11 17 17 C 1.47097 * 114.32990 * 155.01725 * 16 14 13 18 18 C 1.54863 * 110.17635 * 62.88820 * 17 16 14 19 19 N 1.44659 * 109.56239 * 288.46802 * 18 17 16 20 20 C 1.36926 * 118.81753 * 270.95388 * 19 18 17 21 21 H 1.08008 * 120.00478 * 27.85211 * 20 19 18 22 22 C 1.38814 * 120.00220 * 207.85043 * 20 19 18 23 23 N 1.31614 * 120.00223 * 11.65855 * 22 20 19 24 24 Si 1.86806 * 120.00003 * 191.65913 * 22 20 19 25 25 H 1.48498 * 109.47046 * 90.00219 * 24 22 20 26 26 H 1.48504 * 109.46766 * 210.00130 * 24 22 20 27 27 H 1.48500 * 109.47120 * 329.99960 * 24 22 20 28 28 C 1.47605 * 122.53954 * 90.96303 * 19 18 17 29 29 C 1.50880 * 109.49116 * 85.11676 * 14 13 11 30 30 H 1.08997 * 109.47107 * 64.17854 * 1 2 3 31 31 H 1.08994 * 109.47480 * 184.18384 * 1 2 3 32 32 H 1.09008 * 109.46958 * 304.18235 * 1 2 3 33 33 H 1.08997 * 109.46711 * 240.00063 * 2 1 3 34 34 H 1.09004 * 109.46994 * 120.00270 * 2 1 3 35 35 H 1.09003 * 110.92661 * 23.46908 * 5 3 2 36 36 H 1.09000 * 110.59297 * 260.14338 * 5 3 2 37 37 H 1.09000 * 111.00504 * 206.23140 * 6 5 3 38 38 H 1.09001 * 111.00359 * 82.37983 * 6 5 3 39 39 H 1.09003 * 110.36764 * 278.16858 * 7 6 5 40 40 H 1.09001 * 110.36505 * 155.84869 * 7 6 5 41 41 H 0.96999 * 120.00451 * 359.97438 * 13 11 9 42 42 H 1.09002 * 108.51333 * 33.76264 * 16 14 13 43 43 H 1.09000 * 108.39096 * 276.18536 * 16 14 13 44 44 H 1.09002 * 109.32417 * 183.05780 * 17 16 14 45 45 H 1.08994 * 109.32706 * 302.70955 * 17 16 14 46 46 H 1.09000 * 109.45424 * 48.69238 * 18 17 16 47 47 H 1.09005 * 109.44784 * 168.60858 * 18 17 16 48 48 H 0.96998 * 120.00755 * 179.97438 * 23 22 20 49 49 H 1.08997 * 108.95030 * 197.17748 * 28 19 18 50 50 H 1.08999 * 108.95088 * 78.54652 * 28 19 18 51 51 H 1.09008 * 109.36895 * 332.04510 * 29 14 13 52 52 H 1.08997 * 109.37067 * 91.66464 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5907 1.9967 -0.8240 5 6 1.6921 2.1192 1.3425 6 6 2.9461 2.9876 1.6268 7 6 4.0792 2.0887 1.0720 8 7 3.5045 1.4549 -0.1286 9 6 4.2054 0.9723 -1.1737 10 8 3.6236 0.5527 -2.1526 11 6 5.6991 0.9537 -1.1272 12 8 6.2809 1.3736 -0.1485 13 7 6.3998 0.4706 -2.1721 14 6 7.8640 0.4528 -2.1267 15 1 8.2221 1.3286 -1.5856 16 6 8.4177 0.4713 -3.5482 17 6 9.7762 1.0238 -3.6623 18 6 10.7779 0.1462 -2.8719 19 7 10.5654 0.3273 -1.4525 20 6 11.2430 1.3262 -0.8059 21 1 11.5465 2.2106 -1.3464 22 6 11.5398 1.2022 0.5445 23 7 11.3805 0.0444 1.1497 24 14 12.1654 2.6787 1.5027 25 1 11.0141 3.4192 2.0782 26 1 13.0547 2.2168 2.5986 27 1 12.9247 3.5736 0.5929 28 6 9.6457 -0.5237 -0.6724 29 6 8.3308 -0.7984 -1.4246 30 1 -0.3633 0.4476 -0.9250 31 1 -0.3634 -1.0248 0.0750 32 1 -0.3633 0.5774 0.8502 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5513 1.3765 2.1279 36 1 0.8055 2.7446 1.2382 37 1 3.0699 3.1568 2.6964 38 1 2.8973 3.9330 1.0864 39 1 4.3559 1.3311 1.8053 40 1 4.9460 2.6929 0.8041 41 1 5.9348 0.1346 -2.9543 42 1 7.7494 1.0646 -4.1723 43 1 8.4268 -0.5506 -3.9271 44 1 10.0685 1.0487 -4.7121 45 1 9.7886 2.0368 -3.2602 46 1 10.6279 -0.9012 -3.1336 47 1 11.7965 0.4408 -3.1246 48 1 11.5883 -0.0425 2.0932 49 1 9.4169 -0.0264 0.2701 50 1 10.1367 -1.4733 -0.4596 51 1 7.5688 -1.1202 -0.7146 52 1 8.4929 -1.5865 -2.1599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052850033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:58 Heat of formation + Delta-G solvation = -68.431205 kcal Electronic energy + Delta-G solvation = -31059.244803 eV Core-core repulsion = 27058.345285 eV Total energy + Delta-G solvation = -4000.899518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03605 -40.55927 -39.17405 -38.70306 -36.43984 -34.62831 -34.39626 -32.72424 -32.63514 -32.17782 -28.88845 -28.06859 -26.78907 -25.45020 -25.09875 -23.95488 -23.01625 -21.86467 -21.60649 -21.01454 -20.43106 -18.71159 -18.56594 -18.19419 -17.54278 -17.07063 -16.79160 -16.36981 -16.14027 -15.78804 -15.55310 -15.41432 -14.96028 -14.82327 -14.77088 -14.45527 -14.37866 -14.04310 -14.02939 -13.61790 -13.46423 -13.28535 -13.02366 -12.99898 -12.81633 -12.76088 -12.63693 -12.49024 -12.16199 -12.08126 -12.03783 -11.99347 -11.75495 -11.63538 -11.56192 -11.46724 -11.42377 -11.35544 -10.56536 -10.45252 -10.26180 -9.87359 -8.61431 -7.83201 -5.31551 0.30662 1.20338 1.43719 1.46980 1.53751 2.08858 2.41144 2.51882 3.24706 3.31535 3.56113 3.64005 3.68717 3.75480 3.84269 4.04061 4.12976 4.19445 4.30057 4.33745 4.43005 4.44974 4.46326 4.53460 4.65892 4.71524 4.78466 4.85326 4.89272 4.91043 4.95787 4.97918 5.06211 5.09735 5.12752 5.13207 5.19963 5.20999 5.22627 5.30418 5.31435 5.42610 5.46978 5.50024 5.60936 5.69237 5.80169 6.00804 6.20234 6.44068 6.65645 6.96030 7.20830 7.97307 8.36608 9.21568 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.003229 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.783000 B = 8669.794473 C = 9988.679775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.127 4.127 7 C 0.093 3.907 8 N -0.586 5.586 9 C 0.523 3.477 10 O -0.540 6.540 11 C 0.497 3.503 12 O -0.538 6.538 13 N -0.684 5.684 14 C 0.163 3.837 15 H 0.062 0.938 16 C -0.105 4.105 17 C -0.131 4.131 18 C 0.147 3.853 19 N -0.605 5.605 20 C -0.259 4.259 21 H 0.065 0.935 22 C -0.050 4.050 23 N -0.936 5.936 24 Si 0.960 3.040 25 H -0.292 1.292 26 H -0.294 1.294 27 H -0.266 1.266 28 C 0.198 3.802 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.417 0.583 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.040 0.960 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.246 0.754 49 H 0.035 0.965 50 H -0.003 1.003 51 H 0.048 0.952 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.334 2.513 -4.259 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.026 3.974 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.165 4.165 7 C -0.029 4.029 8 N -0.319 5.319 9 C 0.305 3.695 10 O -0.418 6.418 11 C 0.277 3.723 12 O -0.415 6.415 13 N -0.336 5.336 14 C 0.059 3.941 15 H 0.080 0.920 16 C -0.143 4.143 17 C -0.172 4.172 18 C 0.020 3.980 19 N -0.327 5.327 20 C -0.390 4.390 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.789 3.211 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.190 1.190 28 C 0.072 3.928 29 C -0.173 4.173 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.254 0.746 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.015 0.985 51 H 0.066 0.934 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.129 2.497 -4.008 22.627 hybrid contribution 0.738 0.247 0.587 0.974 sum -21.392 2.744 -3.421 21.836 Atomic orbital electron populations 1.21675 0.92691 1.02661 1.02802 1.21864 0.98224 0.95395 1.01730 1.22060 0.77517 0.97577 1.00284 0.90224 1.22786 0.98888 0.99361 0.94340 1.22865 0.92795 0.97797 1.03054 1.22685 0.97958 0.96580 0.85723 1.48530 1.08605 1.56340 1.18453 1.19715 0.87554 0.79314 0.82882 1.90703 1.71309 1.47775 1.32027 1.20351 0.88566 0.79374 0.84001 1.90805 1.71700 1.46301 1.32685 1.45962 1.07552 1.61090 1.19037 1.20382 0.76597 0.98673 0.98440 0.91978 1.20547 0.97437 1.03089 0.93204 1.21288 0.95411 0.99610 1.00851 1.20977 0.96658 0.97211 0.83105 1.43864 1.47274 1.37018 1.04582 1.19475 1.29466 0.96815 0.93194 0.91712 1.25790 1.00701 0.98592 0.99440 1.70190 1.54136 1.23792 1.10133 0.85367 0.77541 0.79691 0.78497 1.21916 1.22005 1.19048 1.20586 0.86759 0.92416 0.93042 1.22269 0.97866 0.97470 0.99703 0.92510 0.92063 0.90512 0.93471 0.91865 0.89055 0.87158 0.87559 0.90020 0.91374 0.90801 0.74558 0.90485 0.90163 0.89100 0.94102 0.93358 0.94169 0.94446 0.94669 0.98485 0.93353 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.82 71.98 0.71 -1.03 16 2 C -0.13 -2.46 5.41 30.59 0.17 -2.29 16 3 C 0.13 2.36 2.87 45.34 0.13 2.49 16 4 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.12 -1.34 5.55 31.78 0.18 -1.17 16 6 C -0.13 -1.82 7.08 31.99 0.23 -1.59 16 7 C 0.09 2.19 5.89 86.86 0.51 2.71 16 8 N -0.59 -14.94 3.07 -789.63 -2.42 -17.36 16 9 C 0.52 16.01 7.64 87.27 0.67 16.68 16 10 O -0.54 -17.30 15.64 -3.25 -0.05 -17.35 16 11 C 0.50 17.22 7.67 87.27 0.67 17.88 16 12 O -0.54 -22.26 13.57 -3.25 -0.04 -22.30 16 13 N -0.68 -21.42 4.92 -447.85 -2.21 -23.63 16 14 C 0.16 5.82 2.06 44.16 0.09 5.91 16 15 H 0.06 2.83 6.92 -2.39 -0.02 2.82 16 16 C -0.10 -3.00 4.69 28.61 0.13 -2.87 16 17 C -0.13 -4.18 5.75 29.39 0.17 -4.02 16 18 C 0.15 5.83 5.65 87.36 0.49 6.32 16 19 N -0.60 -30.32 2.27 -698.17 -1.59 -31.91 16 20 C -0.26 -14.47 9.46 84.04 0.79 -13.68 16 21 H 0.07 3.54 7.86 -2.91 -0.02 3.52 16 22 C -0.05 -2.90 4.97 84.86 0.42 -2.48 16 23 N -0.94 -57.24 10.85 21.65 0.23 -57.01 16 24 Si 0.96 46.83 29.57 68.60 2.03 48.86 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 C 0.20 10.00 4.64 86.49 0.40 10.40 16 29 C -0.13 -5.23 5.38 30.23 0.16 -5.07 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.65 7.37 -2.38 -0.02 0.64 16 33 H 0.05 1.14 6.87 -2.39 -0.02 1.12 16 34 H 0.06 1.17 8.01 -2.38 -0.02 1.15 16 35 H 0.09 0.91 7.77 -2.39 -0.02 0.89 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.14 6.48 -2.39 -0.02 2.13 16 41 H 0.42 10.86 8.07 -92.71 -0.75 10.11 16 42 H 0.08 1.86 8.04 -2.39 -0.02 1.84 16 43 H 0.08 1.99 7.34 -2.39 -0.02 1.97 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 47 H 0.04 1.63 7.99 -2.38 -0.02 1.61 16 48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 49 H 0.03 2.08 6.31 -2.39 -0.02 2.06 16 50 H 0.00 -0.16 8.02 -2.39 -0.02 -0.18 16 51 H 0.05 1.95 7.85 -2.38 -0.02 1.93 16 52 H 0.07 2.54 7.31 -2.39 -0.02 2.52 16 Total: -1.00 -72.21 397.59 2.03 -70.17 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.15 Total: 22.32 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 5.92 Total: 28.21 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.98 Total: -129.91 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.10 Total: -39.66 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -72.21 2.03 -70.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052850033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.740 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds