Wall clock time and date at job start Tue Mar 31 2020 19:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47339 * 2 1 4 4 H 1.09001 * 109.99326 * 53.65094 * 3 2 1 5 5 C 1.54330 * 109.88265 * 292.56421 * 3 2 1 6 6 C 1.55157 * 102.93897 * 218.38825 * 5 3 2 7 7 C 1.54691 * 101.67909 * 35.33112 * 6 5 3 8 8 N 1.47016 * 109.88528 * 174.75016 * 3 2 1 9 9 C 1.34776 * 125.65204 * 298.32229 * 8 3 2 10 10 O 1.21350 * 119.99574 * 5.21780 * 9 8 3 11 11 C 1.49447 * 120.00202 * 185.20826 * 9 8 3 12 12 O 1.21350 * 120.00224 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00202 * 179.97438 * 11 9 8 14 14 C 1.46498 * 120.00347 * 180.02562 * 13 11 9 15 15 H 1.08999 * 109.16297 * 35.66559 * 14 13 11 16 16 C 1.50130 * 109.20879 * 154.99997 * 14 13 11 17 17 C 1.52523 * 105.41958 * 218.02772 * 16 14 13 18 18 C 1.46240 * 114.27803 * 270.60202 * 17 16 14 19 19 N 1.50165 * 107.53410 * 58.40238 * 18 17 16 20 20 C 1.36936 * 120.53831 * 109.61506 * 19 18 17 21 21 H 1.07998 * 120.00358 * 146.33938 * 20 19 18 22 22 C 1.38817 * 119.99720 * 326.33796 * 20 19 18 23 23 N 1.31619 * 119.99969 * 3.34967 * 22 20 19 24 24 Si 1.86796 * 119.99823 * 183.34172 * 22 20 19 25 25 H 1.48501 * 109.47117 * 90.00487 * 24 22 20 26 26 H 1.48503 * 109.47148 * 209.99951 * 24 22 20 27 27 H 1.48498 * 109.47345 * 330.00128 * 24 22 20 28 28 C 1.43436 * 118.92273 * 289.58647 * 19 18 17 29 29 C 1.54834 * 109.20868 * 276.32505 * 14 13 11 30 30 H 1.08999 * 109.46454 * 185.05617 * 1 2 3 31 31 H 1.09001 * 109.46338 * 305.04960 * 1 2 3 32 32 H 1.08999 * 109.47191 * 65.05159 * 1 2 3 33 33 H 1.09003 * 109.47176 * 240.00645 * 2 1 3 34 34 H 1.08994 * 109.47710 * 120.00713 * 2 1 3 35 35 H 1.09002 * 110.71607 * 336.74691 * 5 3 2 36 36 H 1.08999 * 110.72164 * 100.02058 * 5 3 2 37 37 H 1.08996 * 111.00512 * 153.57785 * 6 5 3 38 38 H 1.09009 * 111.00033 * 277.38651 * 6 5 3 39 39 H 1.08997 * 110.39029 * 204.36321 * 7 6 5 40 40 H 1.08999 * 110.23215 * 82.11432 * 7 6 5 41 41 H 0.97003 * 119.99634 * 0.02562 * 13 11 9 42 42 H 1.09005 * 110.24766 * 337.00271 * 16 14 13 43 43 H 1.09005 * 110.24869 * 98.91182 * 16 14 13 44 44 H 1.09004 * 108.51986 * 31.83753 * 17 16 14 45 45 H 1.08994 * 108.52626 * 149.51093 * 17 16 14 46 46 H 1.09003 * 109.84721 * 177.91730 * 18 17 16 47 47 H 1.09001 * 109.83852 * 298.82892 * 18 17 16 48 48 H 0.96998 * 119.99782 * 180.02562 * 23 22 20 49 49 H 1.08997 * 108.15384 * 213.28629 * 28 19 18 50 50 H 1.08992 * 108.16287 * 329.85486 * 28 19 18 51 51 H 1.09000 * 109.36458 * 320.99575 * 29 14 13 52 52 H 1.09007 * 109.35774 * 80.58671 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5919 1.9963 0.8250 5 6 1.6900 2.1230 -1.3402 6 6 2.9462 2.9864 -1.6300 7 6 4.0775 2.0895 -1.0746 8 7 3.5047 1.4550 0.1265 9 6 4.2072 0.9718 1.1703 10 8 3.6359 0.3887 2.0682 11 6 5.6896 1.1539 1.2218 12 8 6.2609 1.7373 0.3240 13 7 6.3921 0.6711 2.2658 14 6 7.8452 0.8501 2.3166 15 1 8.1016 1.8189 1.8879 16 6 8.2984 0.8074 3.7472 17 6 9.4030 1.8538 3.8541 18 6 10.7435 1.3444 3.5678 19 7 10.7254 0.7799 2.1764 20 6 11.3895 1.4131 1.1599 21 1 11.8436 0.8349 0.3688 22 6 11.4789 2.7984 1.1463 23 7 10.9831 3.4997 2.1436 24 14 12.3031 3.6670 -0.2874 25 1 11.2908 3.9702 -1.3306 26 1 12.9183 4.9323 0.1879 27 1 13.3556 2.7891 -0.8592 28 6 10.0017 -0.4337 1.9295 29 6 8.5255 -0.2688 1.4903 30 1 -0.3632 -1.0237 0.0906 31 1 -0.3632 0.5902 0.8413 32 1 -0.3633 0.4335 -0.9318 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 1.5441 1.3794 -2.1237 36 1 0.8059 2.7517 -1.2342 37 1 3.0671 3.1533 -2.7003 38 1 2.9021 3.9332 -1.0916 39 1 4.9446 2.6935 -0.8077 40 1 4.3531 1.3324 -1.8088 41 1 5.9354 0.2051 2.9836 42 1 7.4728 1.0611 4.4122 43 1 8.6877 -0.1813 3.9903 44 1 9.1832 2.6617 3.1561 45 1 9.3981 2.2605 4.8653 46 1 11.4686 2.1560 3.6285 47 1 11.0026 0.5628 4.2820 48 1 11.0453 4.4676 2.1339 49 1 10.5269 -0.9903 1.1534 50 1 10.0204 -1.0317 2.8405 51 1 7.9947 -1.2077 1.6475 52 1 8.4901 -0.0089 0.4322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052850034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:03 Heat of formation + Delta-G solvation = -41.652376 kcal Electronic energy + Delta-G solvation = -31111.935580 eV Core-core repulsion = 27112.197279 eV Total energy + Delta-G solvation = -3999.738301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.80884 -39.22031 -37.78817 -37.42001 -34.74997 -33.66183 -32.27137 -31.69621 -31.54225 -29.95098 -28.10948 -26.40405 -25.45171 -24.03248 -23.50474 -22.65036 -21.94821 -20.81426 -20.17181 -19.31188 -19.06482 -17.47265 -17.11972 -16.68729 -16.13296 -15.40698 -15.38571 -14.94530 -14.86026 -14.49536 -14.09687 -13.93687 -13.71681 -13.63233 -13.42669 -13.26120 -13.14118 -12.59779 -12.47042 -12.33664 -12.23703 -11.88065 -11.85114 -11.68970 -11.47996 -11.43832 -11.11596 -11.06389 -10.93443 -10.86687 -10.65258 -10.60057 -10.34589 -10.19340 -10.01133 -9.84901 -9.43180 -9.41396 -9.18144 -8.84473 -8.59217 -8.34933 -6.52768 -5.75979 -3.28463 1.62406 2.41118 3.41260 3.42594 3.47749 3.48662 3.64580 4.29810 4.35731 4.52673 4.54543 4.67008 4.90346 4.92559 5.04751 5.15077 5.25310 5.33742 5.41988 5.47157 5.49299 5.56626 5.65356 5.69393 5.70594 5.77971 5.82841 5.90236 5.91508 5.93404 6.02482 6.04618 6.23383 6.29430 6.30375 6.45273 6.48231 6.72308 6.82711 6.90231 6.98525 7.00317 7.03990 7.19155 7.27889 7.54001 7.69694 7.82167 7.91141 8.01765 8.31971 8.54978 9.25792 9.87745 10.44830 11.29838 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.003089 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.211804 B = 9062.803661 C =10188.207941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.135 3.865 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.090 3.910 8 N -0.590 5.590 9 C 0.522 3.478 10 O -0.526 6.526 11 C 0.501 3.499 12 O -0.510 6.510 13 N -0.695 5.695 14 C 0.154 3.846 15 H 0.104 0.896 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.163 3.837 19 N -0.590 5.590 20 C -0.250 4.250 21 H 0.064 0.936 22 C 0.012 3.988 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.164 3.836 29 C -0.150 4.150 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.403 0.597 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.030 0.970 46 H 0.099 0.901 47 H 0.001 0.999 48 H 0.253 0.747 49 H 0.033 0.967 50 H 0.028 0.972 51 H 0.046 0.954 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.664 -4.083 -3.003 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.032 4.032 8 N -0.324 5.324 9 C 0.306 3.694 10 O -0.403 6.403 11 C 0.281 3.719 12 O -0.386 6.386 13 N -0.346 5.346 14 C 0.052 3.948 15 H 0.122 0.878 16 C -0.161 4.161 17 C -0.164 4.164 18 C 0.039 3.961 19 N -0.312 5.312 20 C -0.380 4.380 21 H 0.081 0.919 22 C -0.187 4.187 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.034 3.966 29 C -0.193 4.193 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.238 0.762 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.049 0.951 46 H 0.117 0.883 47 H 0.019 0.981 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.046 0.954 51 H 0.065 0.935 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.421 -3.810 -3.065 19.059 hybrid contribution -0.078 0.311 -0.535 0.623 sum -18.499 -3.499 -3.600 19.168 Atomic orbital electron populations 1.21706 0.95043 1.01910 1.01750 1.21928 0.96213 0.96038 1.03440 1.21768 0.79645 0.96932 0.98403 0.90401 1.22751 0.98531 0.99198 0.96041 1.22820 0.94171 0.98522 1.01976 1.22723 0.97870 0.96624 0.85937 1.48354 1.07081 1.57986 1.18993 1.20165 0.88446 0.79390 0.81449 1.90705 1.71522 1.40827 1.37244 1.19914 0.87238 0.80924 0.83836 1.90736 1.70827 1.40478 1.36574 1.46401 1.09670 1.56065 1.22490 1.21453 0.74724 1.01832 0.96740 0.87790 1.21403 0.99242 1.01226 0.94258 1.20938 0.96037 0.98805 1.00620 1.20245 0.96474 0.96218 0.83115 1.44110 1.55295 1.26641 1.05146 1.19148 1.27365 0.88800 1.02670 0.91881 1.25225 0.99295 0.96735 0.97397 1.69849 1.49007 1.05555 1.30254 0.86321 0.78821 0.79016 0.82770 1.21315 1.21803 1.20613 1.20349 0.89160 0.89805 0.97284 1.23305 0.99670 0.96080 1.00205 0.92500 0.92587 0.92647 0.91806 0.90179 0.90277 0.89960 0.89570 0.90520 0.87165 0.91086 0.76212 0.92688 0.91649 0.88199 0.95119 0.88299 0.98083 0.93677 0.94832 0.95373 0.93529 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.69 37.16 0.36 -0.73 16 2 C -0.14 -1.37 5.41 -26.73 -0.14 -1.51 16 3 C 0.14 1.39 2.93 -66.95 -0.20 1.20 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.13 -0.96 5.71 -24.89 -0.14 -1.10 16 6 C -0.14 -1.15 7.07 -24.70 -0.17 -1.33 16 7 C 0.09 1.08 6.23 -2.65 -0.02 1.06 16 8 N -0.59 -7.73 3.07 -163.66 -0.50 -8.24 16 9 C 0.52 8.16 7.73 -11.59 -0.09 8.07 16 10 O -0.53 -8.73 15.26 5.50 0.08 -8.65 16 11 C 0.50 8.77 7.81 -11.59 -0.09 8.68 16 12 O -0.51 -10.20 13.37 5.50 0.07 -10.13 16 13 N -0.69 -11.64 4.97 -54.69 -0.27 -11.91 16 14 C 0.15 2.97 2.22 -68.39 -0.15 2.82 16 15 H 0.10 2.49 6.26 -51.93 -0.33 2.17 16 16 C -0.12 -2.20 5.33 -28.40 -0.15 -2.35 16 17 C -0.13 -2.63 4.98 -30.19 -0.15 -2.78 16 18 C 0.16 3.73 5.23 -5.20 -0.03 3.71 16 19 N -0.59 -14.31 2.59 -175.08 -0.45 -14.77 16 20 C -0.25 -6.72 9.59 -15.06 -0.14 -6.86 16 21 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 22 C 0.01 0.32 5.33 -17.43 -0.09 0.22 16 23 N -0.90 -24.63 8.85 55.49 0.49 -24.14 16 24 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.16 3.42 5.17 -4.66 -0.02 3.40 16 29 C -0.15 -2.93 5.98 -24.76 -0.15 -3.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 33 H 0.06 0.62 8.02 -51.93 -0.42 0.21 16 34 H 0.08 1.00 6.54 -51.93 -0.34 0.66 16 35 H 0.08 0.53 7.76 -51.93 -0.40 0.13 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.11 1.58 5.87 -51.93 -0.30 1.28 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 5.94 7.95 -40.82 -0.32 5.62 16 42 H 0.05 0.87 7.85 -51.93 -0.41 0.47 16 43 H 0.06 1.12 6.30 -51.93 -0.33 0.79 16 44 H 0.10 2.46 5.22 -51.93 -0.27 2.19 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.10 2.55 6.09 -51.93 -0.32 2.24 16 47 H 0.00 0.02 8.13 -51.93 -0.42 -0.40 16 48 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 49 H 0.03 0.70 8.00 -51.93 -0.42 0.29 16 50 H 0.03 0.54 6.90 -51.93 -0.36 0.18 16 51 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 52 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -29.37 391.47 -9.89 -39.26 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.80 Total: 6.61 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.38 Total: 9.40 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.74 Total: -59.05 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.37 -9.89 -39.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052850034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.391 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds