Wall clock time and date at job start Tue Mar 31 2020 20:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 H 1.08999 * 109.90594 * 306.03736 * 3 2 1 5 5 C 1.53991 * 109.91687 * 184.94058 * 3 2 1 6 6 H 1.08998 * 110.31282 * 358.33940 * 5 3 2 7 7 C 1.50704 * 110.39328 * 120.46055 * 5 3 2 8 8 O 1.21283 * 119.99954 * 357.21933 * 7 5 3 9 9 N 1.34775 * 119.99844 * 177.21760 * 7 5 3 10 10 C 1.47128 * 121.06250 * 0.02562 * 9 7 5 11 11 C 1.53219 * 108.73709 * 127.77943 * 10 9 7 12 12 O 1.43111 * 109.34565 * 54.12035 * 11 10 9 13 13 C 1.42494 * 113.96573 * 300.04177 * 12 11 10 14 14 C 1.53467 * 113.75960 * 286.84316 * 13 12 11 15 15 N 1.47670 * 85.96803 * 268.70854 * 14 13 12 16 16 C 1.36942 * 134.45281 * 155.71123 * 15 14 13 17 17 H 1.08000 * 119.99800 * 177.07831 * 16 15 14 18 18 C 1.38810 * 120.00258 * 357.07880 * 16 15 14 19 19 N 1.31617 * 119.99600 * 7.10837 * 18 16 15 20 20 Si 1.86799 * 120.00275 * 187.10808 * 18 16 15 21 21 H 1.48493 * 109.46917 * 94.97044 * 20 18 16 22 22 H 1.48489 * 109.47236 * 214.97711 * 20 18 16 23 23 H 1.48500 * 109.46762 * 334.97688 * 20 18 16 24 24 C 1.47670 * 91.08765 * 335.71194 * 15 14 13 25 25 C 1.47346 * 121.05389 * 179.72110 * 9 7 5 26 26 C 1.54601 * 105.14181 * 239.41761 * 5 3 2 27 27 C 1.54931 * 103.07943 * 337.95767 * 26 5 3 28 28 N 1.47897 * 109.91926 * 67.35224 * 3 2 1 29 29 C 1.46911 * 110.99706 * 265.19693 * 28 3 2 30 30 H 1.09001 * 109.47265 * 292.82074 * 1 2 3 31 31 H 1.08997 * 109.46942 * 52.82449 * 1 2 3 32 32 H 1.09006 * 109.47261 * 172.82485 * 1 2 3 33 33 H 1.09006 * 109.47131 * 239.99753 * 2 1 3 34 34 H 1.09001 * 109.47143 * 119.99781 * 2 1 3 35 35 H 1.08998 * 109.59061 * 247.56246 * 10 9 7 36 36 H 1.09003 * 109.58641 * 7.85860 * 10 9 7 37 37 H 1.08996 * 109.48900 * 174.07624 * 11 10 9 38 38 H 1.09001 * 109.49240 * 294.15526 * 11 10 9 39 39 H 1.09003 * 113.79812 * 22.97318 * 14 13 12 40 40 H 1.09009 * 113.79171 * 154.44732 * 14 13 12 41 41 H 0.97010 * 119.99461 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.79230 * 270.02684 * 24 15 14 43 43 H 1.09001 * 113.79287 * 138.56151 * 24 15 14 44 44 H 1.09005 * 109.74699 * 348.04288 * 25 9 7 45 45 H 1.09001 * 109.75162 * 108.76839 * 25 9 7 46 46 H 1.09004 * 110.71657 * 96.39982 * 26 5 3 47 47 H 1.09000 * 110.72684 * 219.50810 * 26 5 3 48 48 H 1.08995 * 110.67149 * 155.93676 * 27 26 5 49 49 H 1.09005 * 110.66776 * 279.06300 * 27 26 5 50 50 H 1.08995 * 109.46787 * 65.85090 * 29 28 3 51 51 H 1.09001 * 109.46842 * 185.84932 * 29 28 3 52 52 H 1.08996 * 109.46994 * 305.85081 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9933 -0.8287 5 6 3.5748 1.4562 -0.1247 6 1 3.9610 0.4374 -0.1558 7 6 3.9946 2.2116 -1.3593 8 8 3.1548 2.6579 -2.1120 9 7 5.3033 2.3912 -1.6269 10 6 6.3414 1.8594 -0.7303 11 6 7.3312 1.0335 -1.5585 12 8 7.8264 1.8307 -2.6388 13 6 6.8137 2.2940 -3.5278 14 6 6.2419 1.1989 -4.4382 15 7 7.2869 1.5995 -5.4015 16 6 7.9298 0.9721 -6.4352 17 1 8.6455 1.5148 -7.0348 18 6 7.6615 -0.3614 -6.7122 19 7 6.6917 -0.9835 -6.0759 20 14 8.6767 -1.2729 -7.9881 21 1 9.7804 -2.0021 -7.3135 22 1 7.8120 -2.2408 -8.7094 23 1 9.2449 -0.3001 -8.9556 24 6 7.3609 2.9477 -4.8036 25 6 5.7398 3.1207 -2.8304 26 6 4.0766 2.1818 1.1449 27 6 2.8424 3.0068 1.5882 28 7 1.7032 2.0960 1.2833 29 6 0.4443 2.8459 1.1776 30 1 -0.3634 0.3986 0.9472 31 1 -0.3633 0.6210 -0.8188 32 1 -0.3634 -1.0197 -0.1284 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.8666 2.6845 -0.2492 36 1 5.8801 1.2276 0.0288 37 1 8.1623 0.7210 -0.9264 38 1 6.8262 0.1536 -1.9574 39 1 6.3690 0.1899 -4.0458 40 1 5.2269 1.3985 -4.7822 41 1 6.5045 -1.9155 -6.2693 42 1 6.6790 3.6675 -5.2561 43 1 8.3772 3.3283 -4.7015 44 1 4.8930 3.2640 -3.5016 45 1 6.1522 4.0885 -2.5451 46 1 4.3567 1.4627 1.9147 47 1 4.9144 2.8378 0.9085 48 1 2.8892 3.2262 2.6548 49 1 2.7658 3.9265 1.0082 50 1 -0.3795 2.1514 1.0127 51 1 0.2730 3.4002 2.1004 52 1 0.5053 3.5423 0.3414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053264267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:27 Heat of formation + Delta-G solvation = 0.082706 kcal Electronic energy + Delta-G solvation = -31651.314665 eV Core-core repulsion = 27653.386134 eV Total energy + Delta-G solvation = -3997.928532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.93085 -39.56938 -37.97990 -36.27165 -34.57864 -33.35783 -32.72323 -32.15678 -29.99186 -28.45234 -27.85589 -26.67455 -25.46043 -25.07868 -23.43836 -22.98682 -22.26797 -21.36251 -20.37700 -19.11624 -18.82179 -17.07246 -16.81562 -16.41797 -16.06216 -15.88228 -15.35704 -15.05640 -14.97527 -14.72043 -14.33484 -14.15792 -13.74251 -13.57088 -13.47877 -13.33799 -13.30009 -13.12794 -12.76569 -12.51881 -12.38297 -12.28373 -12.09051 -11.62637 -11.55875 -11.40561 -11.32493 -11.14712 -10.94489 -10.88956 -10.80788 -10.79018 -10.66105 -10.63680 -10.23507 -9.98207 -9.62895 -9.53346 -9.25426 -8.78527 -8.62885 -8.26725 -6.88628 -5.75653 -3.06576 2.64340 2.90459 3.40924 3.45409 3.47648 3.77697 4.02680 4.27435 4.38370 4.43308 4.46242 4.81928 4.89456 4.93111 5.03766 5.09782 5.11965 5.17034 5.17555 5.23376 5.29453 5.32392 5.34551 5.35936 5.47804 5.48960 5.55650 5.60301 5.68865 5.71760 5.75437 5.77685 5.80902 5.92030 5.95303 5.95726 6.05620 6.09815 6.25753 6.28553 6.43181 6.48234 6.55159 6.65799 6.85489 6.99924 7.18227 7.41770 7.50187 7.79727 7.98137 8.19162 9.04858 9.71962 10.58323 11.41868 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003090 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.190974 B = 9059.084845 C = 9822.948915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C 0.072 3.928 4 H 0.082 0.918 5 C -0.118 4.118 6 H 0.109 0.891 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.607 5.607 10 C 0.072 3.928 11 C 0.046 3.954 12 O -0.341 6.341 13 C 0.049 3.951 14 C 0.152 3.848 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.137 3.863 25 C 0.100 3.900 26 C -0.117 4.117 27 C 0.033 3.967 28 N -0.513 5.513 29 C 0.009 3.991 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.045 0.955 50 H 0.076 0.924 51 H 0.065 0.935 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 6.366 19.559 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.036 4.036 4 H 0.100 0.900 5 C -0.140 4.140 6 H 0.127 0.873 7 C 0.311 3.689 8 O -0.415 6.415 9 N -0.340 5.340 10 C -0.052 4.052 11 C -0.032 4.032 12 O -0.259 6.259 13 C 0.008 3.992 14 C 0.026 3.974 15 N -0.329 5.329 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.023 4.023 26 C -0.156 4.156 27 C -0.094 4.094 28 N -0.237 5.237 29 C -0.139 4.139 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.077 5.997 19.303 21.767 hybrid contribution 0.345 -0.045 -1.338 1.382 sum -7.732 5.951 17.965 20.444 Atomic orbital electron populations 1.21847 0.95881 1.01398 1.01734 1.21508 0.96201 0.94749 1.02069 1.22479 0.92316 0.96864 0.91973 0.89972 1.22180 0.97379 1.01031 0.93413 0.87338 1.20416 0.81798 0.79783 0.86889 1.90667 1.50318 1.50634 1.49918 1.48089 1.05233 1.55691 1.24994 1.22568 0.90336 0.99043 0.93219 1.22886 0.97519 0.93794 0.89019 1.87937 1.31353 1.68915 1.37684 1.23570 0.88779 0.97516 0.89366 1.22688 0.91387 0.96909 0.86421 1.45825 1.42526 1.07623 1.36920 1.19010 1.16810 0.92867 1.06046 0.90103 1.24769 0.98688 0.96725 1.00144 1.69840 1.31049 1.10832 1.45101 0.86097 0.79403 0.79696 0.80554 1.21565 1.21785 1.20600 1.22477 0.98986 0.90171 0.87361 1.22160 0.98832 0.94630 0.86704 1.22642 0.97828 0.99280 0.95804 1.23317 0.90263 0.94643 1.01206 1.64855 1.02228 1.26929 1.29725 1.22681 0.92881 0.97688 1.00696 0.92059 0.93041 0.92933 0.91561 0.91238 0.90599 0.88887 0.88085 0.92098 0.90796 0.94918 0.93730 0.93310 0.92548 0.88089 0.91390 0.89482 0.90262 0.89717 0.93632 0.90569 0.91628 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.79 37.16 0.33 -1.12 16 2 C -0.11 -1.13 5.38 -26.73 -0.14 -1.28 16 3 C 0.07 0.84 2.20 -66.65 -0.15 0.69 16 4 H 0.08 1.18 5.93 -51.93 -0.31 0.88 16 5 C -0.12 -1.33 2.11 -90.41 -0.19 -1.52 16 6 H 0.11 1.13 7.28 -51.93 -0.38 0.75 16 7 C 0.52 7.78 7.06 -10.98 -0.08 7.71 16 8 O -0.54 -9.97 14.75 5.56 0.08 -9.88 16 9 N -0.61 -8.71 2.99 -172.71 -0.52 -9.22 16 10 C 0.07 0.81 5.00 -3.59 -0.02 0.79 16 11 C 0.05 0.66 6.88 37.27 0.26 0.91 16 12 O -0.34 -6.45 10.52 -35.23 -0.37 -6.82 16 13 C 0.05 0.96 1.21 -90.55 -0.11 0.85 16 14 C 0.15 3.68 6.64 -3.17 -0.02 3.66 16 15 N -0.60 -15.89 3.70 -180.34 -0.67 -16.56 16 16 C -0.22 -6.31 10.69 -15.06 -0.16 -6.48 16 17 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.81 11.44 55.49 0.63 -27.17 16 20 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.86 8.33 -3.18 -0.03 2.83 16 25 C 0.10 1.63 5.74 -3.88 -0.02 1.61 16 26 C -0.12 -1.01 5.23 -24.87 -0.13 -1.14 16 27 C 0.03 0.31 6.59 -1.64 -0.01 0.30 16 28 N -0.51 -5.21 5.08 -230.37 -1.17 -6.38 16 29 C 0.01 0.08 9.10 60.07 0.55 0.63 16 30 H 0.06 0.55 6.21 -51.93 -0.32 0.23 16 31 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.09 0.81 5.17 -51.93 -0.27 0.54 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.99 7.19 -51.93 -0.37 0.62 16 39 H 0.07 1.99 6.34 -51.93 -0.33 1.66 16 40 H 0.03 0.84 7.92 -51.92 -0.41 0.43 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.10 1.81 6.89 -51.93 -0.36 1.45 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.66 6.22 -51.93 -0.32 0.34 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 50 H 0.08 0.65 5.40 -51.93 -0.28 0.37 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.03 0.31 7.94 -51.93 -0.41 -0.11 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -34.20 390.10 -9.97 -44.18 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.80 Total: 0.33 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.02 Total: 8.14 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -1.72 Total: -59.33 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.29 Total: -16.70 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.20 -9.97 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053264267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.262 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds