Wall clock time and date at job start Tue Mar 31 2020 20:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 H 1.08999 * 109.90594 * 306.03736 * 3 2 1 5 5 C 1.53991 * 109.91687 * 184.94058 * 3 2 1 6 6 H 1.08998 * 110.31282 * 358.33940 * 5 3 2 7 7 C 1.50704 * 110.39328 * 120.46055 * 5 3 2 8 8 O 1.21283 * 119.99954 * 357.21933 * 7 5 3 9 9 N 1.34775 * 119.99844 * 177.21760 * 7 5 3 10 10 C 1.47128 * 121.06250 * 0.02562 * 9 7 5 11 11 C 1.53219 * 108.73709 * 127.77943 * 10 9 7 12 12 O 1.43111 * 109.34565 * 54.12035 * 11 10 9 13 13 C 1.42494 * 113.96573 * 300.04177 * 12 11 10 14 14 C 1.53467 * 113.75960 * 286.84316 * 13 12 11 15 15 N 1.47670 * 85.96803 * 268.70854 * 14 13 12 16 16 C 1.36942 * 134.45281 * 155.71123 * 15 14 13 17 17 H 1.08000 * 119.99800 * 177.07831 * 16 15 14 18 18 C 1.38810 * 120.00258 * 357.07880 * 16 15 14 19 19 N 1.31617 * 119.99600 * 7.10837 * 18 16 15 20 20 Si 1.86799 * 120.00275 * 187.10808 * 18 16 15 21 21 H 1.48493 * 109.46917 * 94.97044 * 20 18 16 22 22 H 1.48489 * 109.47236 * 214.97711 * 20 18 16 23 23 H 1.48500 * 109.46762 * 334.97688 * 20 18 16 24 24 C 1.47670 * 91.08765 * 335.71194 * 15 14 13 25 25 C 1.47346 * 121.05389 * 179.72110 * 9 7 5 26 26 C 1.54601 * 105.14181 * 239.41761 * 5 3 2 27 27 C 1.54931 * 103.07943 * 337.95767 * 26 5 3 28 28 N 1.47897 * 109.91926 * 67.35224 * 3 2 1 29 29 C 1.46911 * 110.99706 * 265.19693 * 28 3 2 30 30 H 1.09001 * 109.47265 * 292.82074 * 1 2 3 31 31 H 1.08997 * 109.46942 * 52.82449 * 1 2 3 32 32 H 1.09006 * 109.47261 * 172.82485 * 1 2 3 33 33 H 1.09006 * 109.47131 * 239.99753 * 2 1 3 34 34 H 1.09001 * 109.47143 * 119.99781 * 2 1 3 35 35 H 1.08998 * 109.59061 * 247.56246 * 10 9 7 36 36 H 1.09003 * 109.58641 * 7.85860 * 10 9 7 37 37 H 1.08996 * 109.48900 * 174.07624 * 11 10 9 38 38 H 1.09001 * 109.49240 * 294.15526 * 11 10 9 39 39 H 1.09003 * 113.79812 * 22.97318 * 14 13 12 40 40 H 1.09009 * 113.79171 * 154.44732 * 14 13 12 41 41 H 0.97010 * 119.99461 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.79230 * 270.02684 * 24 15 14 43 43 H 1.09001 * 113.79287 * 138.56151 * 24 15 14 44 44 H 1.09005 * 109.74699 * 348.04288 * 25 9 7 45 45 H 1.09001 * 109.75162 * 108.76839 * 25 9 7 46 46 H 1.09004 * 110.71657 * 96.39982 * 26 5 3 47 47 H 1.09000 * 110.72684 * 219.50810 * 26 5 3 48 48 H 1.08995 * 110.67149 * 155.93676 * 27 26 5 49 49 H 1.09005 * 110.66776 * 279.06300 * 27 26 5 50 50 H 1.08995 * 109.46787 * 65.85090 * 29 28 3 51 51 H 1.09001 * 109.46842 * 185.84932 * 29 28 3 52 52 H 1.08996 * 109.46994 * 305.85081 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9933 -0.8287 5 6 3.5748 1.4562 -0.1247 6 1 3.9610 0.4374 -0.1558 7 6 3.9946 2.2116 -1.3593 8 8 3.1548 2.6579 -2.1120 9 7 5.3033 2.3912 -1.6269 10 6 6.3414 1.8594 -0.7303 11 6 7.3312 1.0335 -1.5585 12 8 7.8264 1.8307 -2.6388 13 6 6.8137 2.2940 -3.5278 14 6 6.2419 1.1989 -4.4382 15 7 7.2869 1.5995 -5.4015 16 6 7.9298 0.9721 -6.4352 17 1 8.6455 1.5148 -7.0348 18 6 7.6615 -0.3614 -6.7122 19 7 6.6917 -0.9835 -6.0759 20 14 8.6767 -1.2729 -7.9881 21 1 9.7804 -2.0021 -7.3135 22 1 7.8120 -2.2408 -8.7094 23 1 9.2449 -0.3001 -8.9556 24 6 7.3609 2.9477 -4.8036 25 6 5.7398 3.1207 -2.8304 26 6 4.0766 2.1818 1.1449 27 6 2.8424 3.0068 1.5882 28 7 1.7032 2.0960 1.2833 29 6 0.4443 2.8459 1.1776 30 1 -0.3634 0.3986 0.9472 31 1 -0.3633 0.6210 -0.8188 32 1 -0.3634 -1.0197 -0.1284 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.8666 2.6845 -0.2492 36 1 5.8801 1.2276 0.0288 37 1 8.1623 0.7210 -0.9264 38 1 6.8262 0.1536 -1.9574 39 1 6.3690 0.1899 -4.0458 40 1 5.2269 1.3985 -4.7822 41 1 6.5045 -1.9155 -6.2693 42 1 6.6790 3.6675 -5.2561 43 1 8.3772 3.3283 -4.7015 44 1 4.8930 3.2640 -3.5016 45 1 6.1522 4.0885 -2.5451 46 1 4.3567 1.4627 1.9147 47 1 4.9144 2.8378 0.9085 48 1 2.8892 3.2262 2.6548 49 1 2.7658 3.9265 1.0082 50 1 -0.3795 2.1514 1.0127 51 1 0.2730 3.4002 2.1004 52 1 0.5053 3.5423 0.3414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053264267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:25 Heat of formation + Delta-G solvation = -24.797691 kcal Electronic energy + Delta-G solvation = -31652.393560 eV Core-core repulsion = 27653.386134 eV Total energy + Delta-G solvation = -3999.007427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.08837 -40.88484 -39.11561 -37.79981 -35.89310 -34.37285 -34.14995 -33.46529 -31.45172 -29.54893 -29.06739 -28.09798 -26.93005 -26.55226 -24.68484 -24.15529 -23.42471 -22.50441 -21.34326 -20.46128 -20.08555 -18.86021 -18.11682 -17.68806 -17.25989 -17.04957 -16.86373 -16.22077 -16.15443 -15.79265 -15.76973 -15.67396 -15.04598 -14.92867 -14.86520 -14.31349 -14.26586 -14.13964 -14.05793 -13.93962 -13.47034 -13.27200 -13.12702 -13.09899 -12.94978 -12.80713 -12.54207 -12.41408 -12.37602 -12.15162 -12.05808 -11.93863 -11.77392 -11.73270 -11.64259 -11.49269 -11.40607 -10.95489 -10.84547 -10.71936 -9.58055 -9.45679 -8.98758 -7.94740 -5.28032 1.42134 1.45098 1.49705 1.53772 1.78750 2.43382 2.62414 2.97723 3.24596 3.29423 3.42855 3.45232 3.59907 3.61969 3.76837 3.92383 4.11608 4.13574 4.14383 4.30048 4.30442 4.38973 4.41674 4.44854 4.56359 4.57647 4.59073 4.60500 4.66438 4.67001 4.75143 4.79033 4.83720 4.89317 4.93018 4.95285 4.98885 5.08038 5.09622 5.12127 5.14428 5.19653 5.26796 5.32247 5.43044 5.44758 5.85144 5.86433 6.04036 6.28021 6.33590 6.85311 7.03865 7.55438 8.48618 9.22415 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003090 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.190974 B = 9059.084845 C = 9822.948915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.073 3.927 4 H 0.047 0.953 5 C -0.115 4.115 6 H 0.121 0.879 7 C 0.517 3.483 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.077 3.923 11 C 0.037 3.963 12 O -0.360 6.360 13 C 0.081 3.919 14 C 0.151 3.849 15 N -0.634 5.634 16 C -0.235 4.235 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.955 5.955 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.265 1.265 24 C 0.134 3.866 25 C 0.108 3.892 26 C -0.109 4.109 27 C 0.030 3.970 28 N -0.509 5.509 29 C 0.009 3.991 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.006 0.994 41 H 0.248 0.752 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.029 0.971 50 H 0.079 0.921 51 H 0.084 0.916 52 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 6.978 22.424 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.036 4.036 4 H 0.065 0.935 5 C -0.137 4.137 6 H 0.139 0.861 7 C 0.307 3.693 8 O -0.464 6.464 9 N -0.342 5.342 10 C -0.045 4.045 11 C -0.040 4.040 12 O -0.279 6.279 13 C 0.039 3.961 14 C 0.025 3.975 15 N -0.360 5.360 16 C -0.363 4.363 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.604 5.604 20 Si 0.810 3.190 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.190 1.190 24 C 0.009 3.991 25 C -0.016 4.016 26 C -0.146 4.146 27 C -0.097 4.097 28 N -0.233 5.233 29 C -0.139 4.139 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.134 0.866 47 H 0.107 0.893 48 H 0.126 0.874 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.102 0.898 52 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -6.721 6.641 22.203 24.130 hybrid contribution -0.089 -0.216 -2.225 2.237 sum -6.810 6.425 19.978 22.063 Atomic orbital electron populations 1.21817 0.95295 1.01709 1.01705 1.21492 0.96789 0.94120 1.01966 1.22388 0.92527 0.97062 0.91637 0.93545 1.22239 0.97274 1.01307 0.92899 0.86121 1.21134 0.81417 0.79225 0.87533 1.90651 1.51604 1.52521 1.51668 1.48216 1.05936 1.55364 1.24645 1.22788 0.89045 1.00111 0.92506 1.23212 0.99537 0.92791 0.88412 1.87893 1.31750 1.69527 1.38703 1.23022 0.88916 0.94946 0.89227 1.22527 0.90032 0.96957 0.87938 1.46234 1.42799 1.10236 1.36763 1.19454 1.16805 0.93487 1.06563 0.89548 1.25675 0.99987 0.97657 1.02724 1.70051 1.32779 1.10664 1.46927 0.85006 0.77586 0.78244 0.78174 1.21149 1.22188 1.18999 1.22707 1.00223 0.88483 0.87702 1.21899 0.96906 0.95444 0.87316 1.22719 0.97695 0.99600 0.94633 1.23430 0.90092 0.93851 1.02334 1.64919 1.02872 1.27325 1.28233 1.22712 0.92799 0.97526 1.00885 0.91114 0.94343 0.92116 0.93055 0.89783 0.87460 0.85626 0.84589 0.95051 0.94235 0.97639 0.94365 0.91428 0.91294 0.90351 0.88309 0.86636 0.89301 0.87352 0.95284 0.90234 0.89765 0.97023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.79 71.98 0.63 -2.16 16 2 C -0.11 -2.18 5.38 30.59 0.16 -2.02 16 3 C 0.07 1.66 2.20 45.06 0.10 1.76 16 4 H 0.05 1.42 5.93 -2.39 -0.01 1.40 16 5 C -0.12 -2.42 2.11 -10.66 -0.02 -2.44 16 6 H 0.12 2.25 7.28 -2.39 -0.02 2.23 16 7 C 0.52 15.31 7.06 87.66 0.62 15.92 16 8 O -0.58 -22.65 14.75 -3.04 -0.04 -22.70 16 9 N -0.61 -16.73 2.99 -818.73 -2.45 -19.18 16 10 C 0.08 1.49 5.00 86.33 0.43 1.92 16 11 C 0.04 1.00 6.88 72.06 0.50 1.50 16 12 O -0.36 -13.23 10.52 -148.98 -1.57 -14.80 16 13 C 0.08 3.14 1.21 -10.65 -0.01 3.13 16 14 C 0.15 7.74 6.64 86.31 0.57 8.31 16 15 N -0.63 -34.34 3.70 -729.36 -2.70 -37.03 16 16 C -0.24 -13.77 10.69 84.03 0.90 -12.87 16 17 H 0.09 4.80 7.84 -2.91 -0.02 4.78 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.96 -60.07 11.44 21.65 0.25 -59.82 16 20 Si 0.98 47.18 29.56 68.60 2.03 49.21 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.13 5.59 8.33 86.30 0.72 6.31 16 25 C 0.11 3.47 5.74 86.02 0.49 3.96 16 26 C -0.11 -1.47 5.23 31.80 0.17 -1.31 16 27 C 0.03 0.48 6.59 86.55 0.57 1.05 16 28 N -0.51 -9.47 5.08 -882.77 -4.48 -13.95 16 29 C 0.01 0.16 9.10 127.69 1.16 1.32 16 30 H 0.07 1.19 6.21 -2.39 -0.01 1.17 16 31 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.13 1.63 5.17 -2.39 -0.01 1.62 16 37 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.03 1.03 7.19 -2.39 -0.02 1.01 16 39 H 0.04 2.27 6.34 -2.39 -0.02 2.25 16 40 H 0.01 0.33 7.92 -2.38 -0.02 0.31 16 41 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 42 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.08 2.90 6.89 -2.38 -0.02 2.89 16 45 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.09 1.08 6.22 -2.39 -0.01 1.06 16 48 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.03 0.55 8.02 -2.38 -0.02 0.54 16 50 H 0.08 1.32 5.40 -2.39 -0.01 1.30 16 51 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.01 0.24 7.94 -2.39 -0.02 0.22 16 Total: -1.00 -79.43 390.10 -0.61 -80.03 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.90 Total: 17.39 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.46 Total: 20.85 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -9.38 Total: -129.99 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.61 Total: -37.50 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.43 -0.61 -80.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053264267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.237 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds