Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.08999 * 110.46399 * 56.75242 * 3 2 1 5 5 C 1.54379 * 110.41101 * 294.33679 * 3 2 1 6 6 H 1.09000 * 110.40862 * 336.31062 * 5 3 2 7 7 C 1.50701 * 110.32370 * 98.47260 * 5 3 2 8 8 O 1.21279 * 120.00010 * 357.08906 * 7 5 3 9 9 N 1.34780 * 119.99914 * 177.09300 * 7 5 3 10 10 C 1.46495 * 119.99934 * 180.02562 * 9 7 5 11 11 H 1.09000 * 110.97827 * 325.69784 * 10 9 7 12 12 C 1.55010 * 111.11308 * 89.85419 * 10 9 7 13 13 O 1.43863 * 105.17617 * 154.07231 * 12 10 9 14 14 C 1.42536 * 109.62591 * 335.69724 * 13 12 10 15 15 C 1.53259 * 115.54646 * 231.51231 * 14 13 12 16 16 N 1.47710 * 85.91493 * 219.83831 * 15 14 13 17 17 C 1.36936 * 134.43849 * 204.13356 * 16 15 14 18 18 H 1.07998 * 120.00410 * 173.49159 * 17 16 15 19 19 C 1.38819 * 119.99906 * 353.49026 * 17 16 15 20 20 N 1.31617 * 119.99720 * 5.07933 * 19 17 16 21 21 Si 1.86796 * 120.00074 * 185.07779 * 19 17 16 22 22 H 1.48504 * 109.47203 * 94.98589 * 21 19 17 23 23 H 1.48502 * 109.47308 * 214.98534 * 21 19 17 24 24 H 1.48502 * 109.47073 * 334.98699 * 21 19 17 25 25 C 1.47709 * 91.12529 * 24.15503 * 16 15 14 26 26 C 1.53772 * 108.37935 * 1.86503 * 14 13 12 27 27 C 1.54261 * 105.06002 * 217.37032 * 5 3 2 28 28 C 1.54371 * 105.06247 * 359.97438 * 27 5 3 29 29 N 1.48560 * 104.59383 * 23.85484 * 28 27 5 30 30 C 1.46900 * 110.99981 * 200.96059 * 29 28 27 31 31 H 1.08997 * 109.47278 * 305.60450 * 1 2 3 32 32 H 1.08993 * 109.46817 * 65.60898 * 1 2 3 33 33 H 1.09005 * 109.46832 * 185.60632 * 1 2 3 34 34 H 1.08998 * 109.46879 * 239.99448 * 2 1 3 35 35 H 1.09002 * 109.46922 * 119.99630 * 2 1 3 36 36 H 0.96998 * 119.99743 * 359.97438 * 9 7 5 37 37 H 1.09000 * 110.30289 * 272.99598 * 12 10 9 38 38 H 1.09006 * 110.30044 * 35.04901 * 12 10 9 39 39 H 1.09002 * 113.79890 * 334.08654 * 15 14 13 40 40 H 1.08991 * 113.80655 * 105.58608 * 15 14 13 41 41 H 0.97007 * 119.99805 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.79882 * 221.59752 * 25 16 15 43 43 H 1.08996 * 113.80449 * 90.09978 * 25 16 15 44 44 H 1.09001 * 110.91666 * 262.78865 * 26 14 13 45 45 H 1.08993 * 110.92541 * 139.14373 * 26 14 13 46 46 H 1.09000 * 110.32015 * 118.89736 * 27 5 3 47 47 H 1.09006 * 110.32227 * 240.99850 * 27 5 3 48 48 H 1.09005 * 110.41440 * 142.62714 * 28 27 5 49 49 H 1.08996 * 110.41736 * 265.07689 * 28 27 5 50 50 H 1.08998 * 109.47173 * 55.57317 * 30 29 28 51 51 H 1.09007 * 109.47355 * 175.57241 * 30 29 28 52 52 H 1.09001 * 109.47338 * 295.57164 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6392 1.9884 0.8540 5 6 1.6573 2.1488 -1.3183 6 1 1.4967 1.4163 -2.1093 7 6 0.4201 2.9868 -1.1231 8 8 -0.1498 2.9865 -0.0525 9 7 -0.0531 3.7365 -2.1382 10 6 -1.2555 4.5516 -1.9483 11 1 -1.9587 4.0591 -1.2766 12 6 -0.8939 5.9693 -1.4363 13 8 -1.9748 6.8136 -1.8706 14 6 -2.6105 6.2315 -3.0058 15 6 -2.7761 7.1560 -4.2169 16 7 -4.1057 6.5330 -4.3775 17 6 -4.9629 6.3610 -5.4315 18 1 -5.8559 5.7660 -5.3098 19 6 -4.6840 6.9516 -6.6565 20 7 -3.5484 7.5926 -6.8346 21 14 -5.9204 6.8363 -8.0519 22 1 -6.7728 8.0523 -8.0597 23 1 -5.1986 6.7296 -9.3453 24 1 -6.7728 5.6355 -7.8602 25 6 -4.1409 6.1703 -2.9461 26 6 -1.9252 4.8890 -3.3101 27 6 2.8649 3.0470 -1.6570 28 6 3.8753 2.8083 -0.5146 29 7 3.5250 1.4676 0.0209 30 6 4.0354 1.2969 1.3878 31 1 -0.3634 0.5983 0.8355 32 1 -0.3633 0.4244 -0.9359 33 1 -0.3633 -1.0228 0.1004 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.4029 3.7369 -2.9943 37 1 -0.8252 5.9724 -0.3485 38 1 0.0471 6.3012 -1.8751 39 1 -2.8144 8.2147 -3.9602 40 1 -2.0873 6.9393 -5.0333 41 1 -3.3533 8.0050 -7.6907 42 1 -4.5342 5.1719 -2.7549 43 1 -4.5873 6.9343 -2.3095 44 1 -1.1766 5.0032 -4.0942 45 1 -2.6588 4.1302 -3.5818 46 1 3.2980 2.7541 -2.6134 47 1 2.5623 4.0939 -1.6838 48 1 4.8942 2.8085 -0.9019 49 1 3.7615 3.5680 0.2587 50 1 3.6614 2.1032 2.0186 51 1 3.6984 0.3391 1.7845 52 1 5.1251 1.3214 1.3745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053805841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = -19.393113 kcal Electronic energy + Delta-G solvation = -30519.093590 eV Core-core repulsion = 26520.320524 eV Total energy + Delta-G solvation = -3998.773067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84471 -39.81314 -38.33434 -36.28130 -34.65723 -33.64479 -32.78855 -32.11590 -30.23348 -28.34877 -27.96497 -26.22709 -25.67585 -24.97244 -23.76823 -22.25046 -21.95772 -21.49124 -20.68896 -19.89973 -18.77918 -17.64242 -16.82477 -16.57869 -16.19029 -15.55402 -15.36425 -15.09633 -14.98620 -14.76180 -14.59813 -14.49628 -14.01919 -13.73740 -13.56335 -13.27955 -13.15998 -12.98684 -12.74938 -12.50871 -12.21561 -12.10997 -11.91053 -11.79286 -11.65688 -11.46620 -11.39908 -11.34768 -11.13086 -10.96074 -10.92294 -10.78490 -10.76632 -10.72935 -10.38330 -10.06171 -9.86567 -9.60910 -9.16402 -8.85828 -8.82671 -8.72898 -6.92732 -5.83116 -3.14587 2.45924 2.89354 3.36671 3.41973 3.43795 3.65123 4.10009 4.18309 4.27921 4.45921 4.48606 4.67255 4.78977 4.86649 4.95369 5.00670 5.03004 5.08068 5.10598 5.11745 5.24211 5.27735 5.29490 5.30812 5.33729 5.36849 5.52286 5.52790 5.53550 5.56896 5.68277 5.77156 5.84861 5.85500 5.89778 5.99052 6.12340 6.19132 6.22213 6.33231 6.44543 6.48469 6.58775 6.65500 6.66870 7.00600 7.17457 7.34984 7.47440 7.67489 7.91834 8.06466 8.99556 9.65349 10.54637 11.34918 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002315 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.810483 B =12091.423354 C =12226.876225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.111 4.111 6 H 0.109 0.891 7 C 0.521 3.479 8 O -0.534 6.534 9 N -0.715 5.715 10 C 0.108 3.892 11 H 0.105 0.895 12 C 0.045 3.955 13 O -0.365 6.365 14 C 0.054 3.946 15 C 0.169 3.831 16 N -0.605 5.605 17 C -0.222 4.222 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.117 3.883 26 C -0.117 4.117 27 C -0.118 4.118 28 C 0.032 3.968 29 N -0.514 5.514 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.046 0.954 50 H 0.029 0.971 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.548 -13.124 13.128 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.032 4.032 4 H 0.092 0.908 5 C -0.133 4.133 6 H 0.127 0.873 7 C 0.307 3.693 8 O -0.410 6.410 9 N -0.367 5.367 10 C 0.003 3.997 11 H 0.122 0.878 12 C -0.034 4.034 13 O -0.282 6.282 14 C 0.014 3.986 15 C 0.043 3.957 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.009 4.009 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.095 4.095 29 N -0.237 5.237 30 C -0.135 4.135 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.048 0.952 51 H 0.089 0.911 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.206 -13.323 13.368 24.876 hybrid contribution -0.727 0.666 -0.824 1.285 sum 15.479 -12.657 12.544 23.604 Atomic orbital electron populations 1.21754 0.95031 1.01261 1.02596 1.21410 0.95792 0.94670 1.02370 1.22630 0.87462 0.96783 0.96362 0.90780 1.22110 0.93011 0.97877 1.00315 0.87321 1.20471 0.85475 0.79397 0.83971 1.90696 1.59476 1.65064 1.25747 1.45882 1.29126 1.46313 1.15380 1.22805 0.86791 0.91480 0.98593 0.87752 1.23642 0.91141 0.88861 0.99734 1.88407 1.46250 1.46243 1.47344 1.24238 0.93411 0.93568 0.87407 1.22444 0.87768 0.94240 0.91223 1.45671 1.18755 1.66748 1.02166 1.18976 1.02050 1.26206 0.87660 0.90031 1.24836 0.97734 0.99796 0.97968 1.69836 1.22597 1.40007 1.24068 0.86112 0.80425 0.77731 0.81585 1.21557 1.21684 1.20512 1.22830 0.91972 0.98280 0.87841 1.22853 1.00250 0.97286 0.95148 1.22345 0.94082 0.99520 0.99717 1.23108 0.99793 0.90033 0.96612 1.65322 1.08997 1.28493 1.20915 1.22513 1.00772 1.01346 0.88879 0.91845 0.93109 0.92924 0.91380 0.91953 0.76197 0.90068 0.92419 0.94561 0.90991 0.93554 0.93513 0.93931 0.89867 0.89110 0.89733 0.90578 0.89658 0.93562 0.95219 0.91144 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.71 37.16 0.32 -1.09 16 2 C -0.10 -0.90 5.56 -26.73 -0.15 -1.05 16 3 C 0.08 0.71 1.72 -66.09 -0.11 0.59 16 4 H 0.07 0.86 6.76 -51.93 -0.35 0.51 16 5 C -0.11 -0.97 2.43 -90.39 -0.22 -1.19 16 6 H 0.11 0.85 7.81 -51.93 -0.41 0.44 16 7 C 0.52 5.85 6.08 -10.98 -0.07 5.79 16 8 O -0.53 -7.74 13.89 5.56 0.08 -7.66 16 9 N -0.71 -7.63 5.09 -51.52 -0.26 -7.89 16 10 C 0.11 1.47 3.43 -65.56 -0.22 1.24 16 11 H 0.10 1.54 7.64 -51.93 -0.40 1.15 16 12 C 0.04 0.65 7.49 38.22 0.29 0.94 16 13 O -0.37 -6.74 11.14 -35.23 -0.39 -7.13 16 14 C 0.05 1.05 1.68 -90.06 -0.15 0.90 16 15 C 0.17 4.02 6.92 -3.25 -0.02 4.00 16 16 N -0.60 -15.48 3.67 -181.32 -0.66 -16.14 16 17 C -0.22 -6.14 10.69 -15.06 -0.16 -6.30 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -26.84 11.51 55.49 0.64 -26.20 16 21 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.12 2.48 8.37 -3.24 -0.03 2.46 16 26 C -0.12 -1.85 5.97 -25.02 -0.15 -2.00 16 27 C -0.12 -0.86 6.57 -25.35 -0.17 -1.03 16 28 C 0.03 0.25 6.49 -2.19 -0.01 0.23 16 29 N -0.51 -4.35 5.34 -230.37 -1.23 -5.58 16 30 C 0.01 0.10 9.45 60.06 0.57 0.67 16 31 H 0.06 0.70 7.67 -51.93 -0.40 0.31 16 32 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.56 8.07 -51.93 -0.42 0.15 16 35 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 36 H 0.40 3.44 8.51 -40.82 -0.35 3.09 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.82 7.25 -51.93 -0.38 1.44 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.05 0.92 7.98 -51.93 -0.41 0.50 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 45 H 0.09 1.49 7.83 -51.93 -0.41 1.08 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.37 7.91 -51.93 -0.41 -0.04 16 50 H 0.03 0.22 7.97 -51.93 -0.41 -0.19 16 51 H 0.07 0.47 7.36 -51.93 -0.38 0.09 16 52 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -31.95 402.58 -10.38 -42.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -9.21 Total: 1.51 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.38 Total: 3.87 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -1.52 Total: -55.82 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.32 Total: -14.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.95 -10.38 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053805841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.934 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds