Wall clock time and date at job start Tue Mar 31 2020 20:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.08999 * 110.46399 * 56.75242 * 3 2 1 5 5 C 1.54379 * 110.41101 * 294.33679 * 3 2 1 6 6 H 1.09000 * 110.40862 * 336.31062 * 5 3 2 7 7 C 1.50701 * 110.32370 * 98.47260 * 5 3 2 8 8 O 1.21279 * 120.00010 * 357.08906 * 7 5 3 9 9 N 1.34780 * 119.99914 * 177.09300 * 7 5 3 10 10 C 1.46495 * 119.99934 * 180.02562 * 9 7 5 11 11 H 1.09000 * 110.97827 * 325.69784 * 10 9 7 12 12 C 1.55010 * 111.11308 * 89.85419 * 10 9 7 13 13 O 1.43863 * 105.17617 * 154.07231 * 12 10 9 14 14 C 1.42536 * 109.62591 * 335.69724 * 13 12 10 15 15 C 1.53259 * 115.54646 * 231.51231 * 14 13 12 16 16 N 1.47710 * 85.91493 * 219.83831 * 15 14 13 17 17 C 1.36936 * 134.43849 * 204.13356 * 16 15 14 18 18 H 1.07998 * 120.00410 * 173.49159 * 17 16 15 19 19 C 1.38819 * 119.99906 * 353.49026 * 17 16 15 20 20 N 1.31617 * 119.99720 * 5.07933 * 19 17 16 21 21 Si 1.86796 * 120.00074 * 185.07779 * 19 17 16 22 22 H 1.48504 * 109.47203 * 94.98589 * 21 19 17 23 23 H 1.48502 * 109.47308 * 214.98534 * 21 19 17 24 24 H 1.48502 * 109.47073 * 334.98699 * 21 19 17 25 25 C 1.47709 * 91.12529 * 24.15503 * 16 15 14 26 26 C 1.53772 * 108.37935 * 1.86503 * 14 13 12 27 27 C 1.54261 * 105.06002 * 217.37032 * 5 3 2 28 28 C 1.54371 * 105.06247 * 359.97438 * 27 5 3 29 29 N 1.48560 * 104.59383 * 23.85484 * 28 27 5 30 30 C 1.46900 * 110.99981 * 200.96059 * 29 28 27 31 31 H 1.08997 * 109.47278 * 305.60450 * 1 2 3 32 32 H 1.08993 * 109.46817 * 65.60898 * 1 2 3 33 33 H 1.09005 * 109.46832 * 185.60632 * 1 2 3 34 34 H 1.08998 * 109.46879 * 239.99448 * 2 1 3 35 35 H 1.09002 * 109.46922 * 119.99630 * 2 1 3 36 36 H 0.96998 * 119.99743 * 359.97438 * 9 7 5 37 37 H 1.09000 * 110.30289 * 272.99598 * 12 10 9 38 38 H 1.09006 * 110.30044 * 35.04901 * 12 10 9 39 39 H 1.09002 * 113.79890 * 334.08654 * 15 14 13 40 40 H 1.08991 * 113.80655 * 105.58608 * 15 14 13 41 41 H 0.97007 * 119.99805 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.79882 * 221.59752 * 25 16 15 43 43 H 1.08996 * 113.80449 * 90.09978 * 25 16 15 44 44 H 1.09001 * 110.91666 * 262.78865 * 26 14 13 45 45 H 1.08993 * 110.92541 * 139.14373 * 26 14 13 46 46 H 1.09000 * 110.32015 * 118.89736 * 27 5 3 47 47 H 1.09006 * 110.32227 * 240.99850 * 27 5 3 48 48 H 1.09005 * 110.41440 * 142.62714 * 28 27 5 49 49 H 1.08996 * 110.41736 * 265.07689 * 28 27 5 50 50 H 1.08998 * 109.47173 * 55.57317 * 30 29 28 51 51 H 1.09007 * 109.47355 * 175.57241 * 30 29 28 52 52 H 1.09001 * 109.47338 * 295.57164 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6392 1.9884 0.8540 5 6 1.6573 2.1488 -1.3183 6 1 1.4967 1.4163 -2.1093 7 6 0.4201 2.9868 -1.1231 8 8 -0.1498 2.9865 -0.0525 9 7 -0.0531 3.7365 -2.1382 10 6 -1.2555 4.5516 -1.9483 11 1 -1.9587 4.0591 -1.2766 12 6 -0.8939 5.9693 -1.4363 13 8 -1.9748 6.8136 -1.8706 14 6 -2.6105 6.2315 -3.0058 15 6 -2.7761 7.1560 -4.2169 16 7 -4.1057 6.5330 -4.3775 17 6 -4.9629 6.3610 -5.4315 18 1 -5.8559 5.7660 -5.3098 19 6 -4.6840 6.9516 -6.6565 20 7 -3.5484 7.5926 -6.8346 21 14 -5.9204 6.8363 -8.0519 22 1 -6.7728 8.0523 -8.0597 23 1 -5.1986 6.7296 -9.3453 24 1 -6.7728 5.6355 -7.8602 25 6 -4.1409 6.1703 -2.9461 26 6 -1.9252 4.8890 -3.3101 27 6 2.8649 3.0470 -1.6570 28 6 3.8753 2.8083 -0.5146 29 7 3.5250 1.4676 0.0209 30 6 4.0354 1.2969 1.3878 31 1 -0.3634 0.5983 0.8355 32 1 -0.3633 0.4244 -0.9359 33 1 -0.3633 -1.0228 0.1004 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.4029 3.7369 -2.9943 37 1 -0.8252 5.9724 -0.3485 38 1 0.0471 6.3012 -1.8751 39 1 -2.8144 8.2147 -3.9602 40 1 -2.0873 6.9393 -5.0333 41 1 -3.3533 8.0050 -7.6907 42 1 -4.5342 5.1719 -2.7549 43 1 -4.5873 6.9343 -2.3095 44 1 -1.1766 5.0032 -4.0942 45 1 -2.6588 4.1302 -3.5818 46 1 3.2980 2.7541 -2.6134 47 1 2.5623 4.0939 -1.6838 48 1 4.8942 2.8085 -0.9019 49 1 3.7615 3.5680 0.2587 50 1 3.6614 2.1032 2.0186 51 1 3.6984 0.3391 1.7845 52 1 5.1251 1.3214 1.3745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053805841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:54 Heat of formation + Delta-G solvation = -42.192017 kcal Electronic energy + Delta-G solvation = -30520.082225 eV Core-core repulsion = 26520.320524 eV Total energy + Delta-G solvation = -3999.761701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82942 -41.10902 -39.24151 -37.87310 -35.77562 -34.35114 -34.15497 -33.51070 -31.41154 -29.90929 -28.84665 -27.37279 -26.84546 -26.79258 -24.49479 -23.87065 -23.08557 -22.33076 -21.58603 -20.70078 -20.35553 -18.79721 -18.50183 -17.73625 -17.06429 -16.88260 -16.63792 -16.52982 -16.15176 -15.80957 -15.57567 -15.39464 -15.21596 -15.00859 -14.62933 -14.43224 -14.37031 -14.10082 -13.86543 -13.73363 -13.39885 -13.32070 -12.90723 -12.86006 -12.79380 -12.60432 -12.56959 -12.53363 -12.44519 -12.34365 -12.05400 -12.04137 -11.92556 -11.77237 -11.64056 -11.59980 -11.44984 -10.90960 -10.78303 -10.39520 -10.10630 -9.51453 -8.97779 -7.94640 -5.28209 1.46176 1.48527 1.56563 1.57178 1.95607 2.43120 2.85981 3.00676 3.21090 3.37523 3.43744 3.46309 3.62695 3.66219 3.71952 3.82257 4.01184 4.07866 4.14548 4.19280 4.31017 4.36942 4.42674 4.53926 4.60033 4.62899 4.65260 4.66208 4.72644 4.73751 4.81540 4.87989 4.91190 4.91902 4.94372 4.97950 5.00281 5.09221 5.12850 5.15031 5.15762 5.18708 5.27645 5.38750 5.45966 5.46955 5.84293 5.85591 6.02176 6.16097 6.49117 6.88111 7.18604 7.56035 8.51182 9.23399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002315 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.810483 B =12091.423354 C =12226.876225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C 0.077 3.923 4 H 0.047 0.953 5 C -0.106 4.106 6 H 0.125 0.875 7 C 0.523 3.477 8 O -0.567 6.567 9 N -0.704 5.704 10 C 0.128 3.872 11 H 0.095 0.905 12 C 0.042 3.958 13 O -0.381 6.381 14 C 0.078 3.922 15 C 0.165 3.835 16 N -0.629 5.629 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.265 1.265 25 C 0.114 3.886 26 C -0.108 4.108 27 C -0.115 4.115 28 C 0.030 3.970 29 N -0.516 5.516 30 C 0.012 3.988 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.417 0.583 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.053 0.947 41 H 0.251 0.749 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.038 0.962 50 H 0.022 0.978 51 H 0.073 0.927 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.664 -14.886 12.902 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.032 4.032 4 H 0.065 0.935 5 C -0.128 4.128 6 H 0.143 0.857 7 C 0.310 3.690 8 O -0.446 6.446 9 N -0.357 5.357 10 C 0.021 3.979 11 H 0.113 0.887 12 C -0.036 4.036 13 O -0.299 6.299 14 C 0.037 3.963 15 C 0.040 3.960 16 N -0.357 5.357 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.807 3.193 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.189 1.189 25 C -0.011 4.011 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.098 4.098 29 N -0.239 5.239 30 C -0.136 4.136 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.056 0.944 50 H 0.040 0.960 51 H 0.092 0.908 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.337 -15.104 13.158 26.492 hybrid contribution -1.047 1.240 -0.640 1.744 sum 16.290 -13.864 12.518 24.785 Atomic orbital electron populations 1.21694 0.95811 1.01415 1.01204 1.21375 0.94953 0.94425 1.03016 1.22552 0.88134 0.96832 0.95654 0.93461 1.22127 0.92183 0.97964 1.00511 0.85719 1.20916 0.85781 0.79013 0.83261 1.90695 1.60591 1.66108 1.27164 1.45733 1.28198 1.45670 1.16123 1.22423 0.87545 0.91232 0.96664 0.88665 1.23845 0.90556 0.88914 1.00271 1.88380 1.47385 1.47452 1.46672 1.23748 0.92790 0.93842 0.85919 1.22326 0.87176 0.93692 0.92838 1.45967 1.19241 1.66895 1.03608 1.19369 1.02398 1.25947 0.88535 0.89499 1.25676 0.99498 0.99986 1.00497 1.70011 1.24265 1.41166 1.24387 0.85051 0.78104 0.77904 0.78216 1.21795 1.21796 1.18928 1.22963 0.93704 0.98961 0.85519 1.22738 1.00289 0.94993 0.96607 1.22385 0.93193 0.99178 1.00521 1.23189 1.00726 0.89380 0.96530 1.65362 1.08121 1.28971 1.21492 1.22559 1.01527 1.01249 0.88282 0.93939 0.93887 0.91802 0.90418 0.91529 0.74559 0.89374 0.90791 0.97269 0.92915 0.94045 0.91519 0.94283 0.88966 0.89347 0.87693 0.90602 0.88182 0.94411 0.95982 0.90800 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.71 71.98 0.63 -1.98 16 2 C -0.10 -1.57 5.56 30.60 0.17 -1.40 16 3 C 0.08 1.34 1.72 45.07 0.08 1.41 16 4 H 0.05 1.09 6.76 -2.39 -0.02 1.07 16 5 C -0.11 -1.63 2.43 -10.64 -0.03 -1.65 16 6 H 0.12 1.56 7.81 -2.39 -0.02 1.54 16 7 C 0.52 10.94 6.08 87.66 0.53 11.47 16 8 O -0.57 -16.12 13.89 -3.03 -0.04 -16.16 16 9 N -0.70 -13.55 5.09 -435.30 -2.22 -15.77 16 10 C 0.13 3.24 3.43 46.53 0.16 3.40 16 11 H 0.10 2.69 7.64 -2.39 -0.02 2.67 16 12 C 0.04 1.15 7.49 72.67 0.54 1.70 16 13 O -0.38 -13.84 11.14 -148.98 -1.66 -15.50 16 14 C 0.08 2.99 1.68 -10.31 -0.02 2.97 16 15 C 0.17 8.09 6.92 86.23 0.60 8.69 16 16 N -0.63 -32.55 3.67 -732.91 -2.69 -35.24 16 17 C -0.23 -13.06 10.69 84.04 0.90 -12.17 16 18 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 19 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 20 N -0.95 -56.61 11.51 21.65 0.25 -56.36 16 21 Si 0.98 45.07 29.56 68.60 2.03 47.10 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 C 0.11 4.81 8.37 86.24 0.72 5.54 16 26 C -0.11 -3.27 5.97 31.70 0.19 -3.08 16 27 C -0.11 -1.35 6.57 31.49 0.21 -1.15 16 28 C 0.03 0.38 6.49 86.45 0.56 0.95 16 29 N -0.52 -7.76 5.34 -882.76 -4.71 -12.47 16 30 C 0.01 0.16 9.45 127.69 1.21 1.37 16 31 H 0.04 0.95 7.67 -2.39 -0.02 0.93 16 32 H 0.04 0.83 7.07 -2.39 -0.02 0.82 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.07 0.99 7.39 -2.39 -0.02 0.97 16 36 H 0.42 5.93 8.51 -92.71 -0.79 5.14 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 2.75 7.25 -2.39 -0.02 2.73 16 41 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 42 H 0.07 2.55 7.98 -2.38 -0.02 2.53 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 2.65 7.86 -2.39 -0.02 2.63 16 45 H 0.09 2.77 7.83 -2.39 -0.02 2.75 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.92 7.65 -2.38 -0.02 0.90 16 48 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.04 0.55 7.91 -2.39 -0.02 0.54 16 50 H 0.02 0.32 7.97 -2.39 -0.02 0.30 16 51 H 0.07 0.90 7.36 -2.38 -0.02 0.88 16 52 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -69.78 402.58 -2.02 -71.80 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.11 Total: 19.63 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.92 Total: 12.97 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -9.37 Total: -119.84 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.70 Total: -31.65 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.78 -2.02 -71.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053805841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.605 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds