Wall clock time and date at job start Tue Mar 31 2020 20:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47330 * 2 1 4 4 H 1.09005 * 110.46191 * 56.74876 * 3 2 1 5 5 C 1.54378 * 110.41125 * 294.33900 * 3 2 1 6 6 H 1.09004 * 110.40882 * 336.30461 * 5 3 2 7 7 C 1.50698 * 110.32550 * 98.47030 * 5 3 2 8 8 O 1.21277 * 120.00176 * 357.09057 * 7 5 3 9 9 N 1.34776 * 120.00172 * 177.09147 * 7 5 3 10 10 C 1.46496 * 120.00108 * 179.97438 * 9 7 5 11 11 H 1.09001 * 110.93066 * 31.35726 * 10 9 7 12 12 C 1.55056 * 110.87285 * 267.71017 * 10 9 7 13 13 O 1.44607 * 103.66861 * 205.32640 * 12 10 9 14 14 C 1.42837 * 106.73765 * 39.08905 * 13 12 10 15 15 C 1.52646 * 115.96514 * 202.47607 * 14 13 12 16 16 N 1.47227 * 87.78182 * 218.40967 * 15 14 13 17 17 C 1.36931 * 135.96862 * 206.38295 * 16 15 14 18 18 H 1.08001 * 119.99723 * 6.39978 * 17 16 15 19 19 C 1.38814 * 120.00115 * 186.40966 * 17 16 15 20 20 N 1.31618 * 119.99695 * 354.57230 * 19 17 16 21 21 Si 1.86802 * 119.99769 * 174.85509 * 19 17 16 22 22 H 1.48497 * 109.47305 * 94.98422 * 21 19 17 23 23 H 1.48508 * 109.46456 * 214.97909 * 21 19 17 24 24 H 1.48501 * 109.47241 * 334.97725 * 21 19 17 25 25 C 1.47219 * 88.06506 * 26.63328 * 16 15 14 26 26 C 1.53326 * 108.32643 * 334.30667 * 14 13 12 27 27 C 1.54265 * 105.05828 * 217.36557 * 5 3 2 28 28 C 1.54371 * 105.06136 * 359.97438 * 27 5 3 29 29 N 1.48561 * 104.59769 * 23.85401 * 28 27 5 30 30 C 1.46900 * 111.00440 * 200.96112 * 29 28 27 31 31 H 1.08997 * 109.46724 * 185.63473 * 1 2 3 32 32 H 1.09002 * 109.47222 * 305.64135 * 1 2 3 33 33 H 1.09000 * 109.46546 * 65.63626 * 1 2 3 34 34 H 1.08994 * 109.47671 * 239.99388 * 2 1 3 35 35 H 1.09007 * 109.46735 * 119.99556 * 2 1 3 36 36 H 0.97006 * 119.99579 * 359.97438 * 9 7 5 37 37 H 1.09001 * 110.58402 * 323.86840 * 12 10 9 38 38 H 1.08997 * 110.58266 * 86.62493 * 12 10 9 39 39 H 1.08998 * 113.50455 * 103.67797 * 15 14 13 40 40 H 1.09005 * 113.50187 * 333.13625 * 15 14 13 41 41 H 0.96998 * 119.99538 * 180.02562 * 20 19 17 42 42 H 1.09006 * 113.50153 * 88.09563 * 25 16 15 43 43 H 1.08994 * 113.50364 * 218.64197 * 25 16 15 44 44 H 1.08990 * 110.56289 * 120.19541 * 26 14 13 45 45 H 1.09004 * 110.56219 * 242.90024 * 26 14 13 46 46 H 1.09000 * 110.32200 * 118.89496 * 27 5 3 47 47 H 1.08997 * 110.32500 * 241.10103 * 27 5 3 48 48 H 1.09002 * 110.41291 * 142.62624 * 28 27 5 49 49 H 1.08998 * 110.41135 * 265.07162 * 28 27 5 50 50 H 1.09001 * 109.46900 * 55.59037 * 30 29 28 51 51 H 1.08991 * 109.47585 * 175.59390 * 30 29 28 52 52 H 1.09003 * 109.46939 * 295.59498 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6392 1.9884 0.8541 5 6 1.6574 2.1489 -1.3183 6 1 1.4968 1.4163 -2.1093 7 6 0.4202 2.9869 -1.1231 8 8 -0.1497 2.9867 -0.0525 9 7 -0.0530 3.7366 -2.1381 10 6 -1.2560 4.5508 -1.9485 11 1 -1.3354 4.8940 -0.9170 12 6 -2.5258 3.7666 -2.3691 13 8 -3.4704 4.8057 -2.7145 14 6 -2.7328 5.8231 -3.3935 15 6 -3.3556 7.2166 -3.3880 16 7 -2.8850 7.3701 -4.7746 17 6 -2.5438 8.4172 -5.5882 18 1 -2.4985 9.4194 -5.1882 19 6 -2.2565 8.1907 -6.9273 20 7 -2.2072 6.9598 -7.3907 21 14 -1.9320 9.6326 -8.0697 22 1 -0.4693 9.8717 -8.1620 23 1 -2.4694 9.3252 -9.4196 24 1 -2.5994 10.8471 -7.5359 25 6 -2.9479 5.9050 -4.9052 26 6 -1.2725 5.7492 -2.9320 27 6 2.8650 3.0471 -1.6569 28 6 3.8754 2.8083 -0.5144 29 7 3.5251 1.4676 0.0210 30 6 4.0354 1.2967 1.3879 31 1 -0.3633 -1.0227 0.1009 32 1 -0.3634 0.5988 0.8352 33 1 -0.3632 0.4240 -0.9362 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.4030 3.7371 -2.9943 37 1 -2.3178 3.1354 -3.2330 38 1 -2.8986 3.1671 -1.5386 39 1 -2.8786 7.9032 -2.6886 40 1 -4.4417 7.2070 -3.2962 41 1 -2.0060 6.8016 -8.3263 42 1 -3.9232 5.5387 -5.2260 43 1 -2.1268 5.4848 -5.4859 44 1 -0.6127 5.5589 -3.7784 45 1 -0.9848 6.6691 -2.4229 46 1 3.2982 2.7542 -2.6133 47 1 2.5629 4.0940 -1.6819 48 1 4.8942 2.8085 -0.9018 49 1 3.7615 3.5681 0.2587 50 1 3.6611 2.1029 2.0188 51 1 3.6988 0.3389 1.7844 52 1 5.1251 1.3217 1.3747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053805843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:59 Heat of formation + Delta-G solvation = -15.616287 kcal Electronic energy + Delta-G solvation = -30600.741590 eV Core-core repulsion = 26602.132299 eV Total energy + Delta-G solvation = -3998.609291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81884 -39.87260 -38.32819 -36.37157 -34.62366 -33.61989 -32.75292 -32.16119 -30.20533 -28.33355 -27.95127 -26.20886 -25.78474 -24.78587 -23.75191 -22.29977 -21.98938 -21.39970 -20.66961 -19.87396 -18.86022 -17.58947 -16.80719 -16.50507 -16.16271 -15.53744 -15.30874 -15.08245 -15.01013 -14.79970 -14.61367 -14.47571 -13.93644 -13.82990 -13.51935 -13.29833 -13.02995 -12.88692 -12.71309 -12.59354 -12.32581 -12.08095 -11.87744 -11.75188 -11.63875 -11.46297 -11.36005 -11.35442 -11.10268 -10.94170 -10.89788 -10.85138 -10.73825 -10.66236 -10.44529 -10.10497 -9.83149 -9.57993 -9.10631 -8.86591 -8.82687 -8.72950 -6.95944 -5.85586 -3.17447 2.49615 2.94897 3.34389 3.40353 3.42417 3.68455 4.13741 4.21816 4.30401 4.46938 4.54987 4.72223 4.82184 4.89824 4.98197 4.98467 5.04641 5.10572 5.12687 5.14836 5.28885 5.30666 5.32325 5.34770 5.37046 5.40106 5.53763 5.54682 5.57484 5.60854 5.72831 5.79949 5.86595 5.88085 5.91738 6.00976 6.11260 6.20726 6.25149 6.37252 6.44484 6.50993 6.57760 6.60127 6.68592 6.92997 7.12784 7.39688 7.42877 7.58083 7.88432 8.10378 8.95851 9.62164 10.55511 11.32529 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.002533 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.886921 B =11049.454522 C =11990.910129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.111 4.111 6 H 0.109 0.891 7 C 0.521 3.479 8 O -0.536 6.536 9 N -0.715 5.715 10 C 0.109 3.891 11 H 0.103 0.897 12 C 0.042 3.958 13 O -0.359 6.359 14 C 0.045 3.955 15 C 0.127 3.873 16 N -0.603 5.603 17 C -0.217 4.217 18 H 0.083 0.917 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.152 3.848 26 C -0.114 4.114 27 C -0.119 4.119 28 C 0.033 3.967 29 N -0.514 5.514 30 C 0.014 3.986 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.404 0.596 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.046 0.954 50 H 0.029 0.971 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -13.319 14.587 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.032 4.032 4 H 0.092 0.908 5 C -0.133 4.133 6 H 0.127 0.873 7 C 0.307 3.693 8 O -0.412 6.412 9 N -0.367 5.367 10 C 0.004 3.996 11 H 0.121 0.879 12 C -0.037 4.037 13 O -0.276 6.276 14 C 0.004 3.996 15 C 0.000 4.000 16 N -0.330 5.330 17 C -0.344 4.344 18 H 0.101 0.899 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.026 3.974 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.095 4.095 29 N -0.237 5.237 30 C -0.135 4.135 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.239 0.761 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.088 0.912 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.281 -13.571 14.788 23.024 hybrid contribution 0.120 1.393 -0.779 1.600 sum 11.401 -12.178 14.009 21.783 Atomic orbital electron populations 1.21752 0.95042 1.01224 1.02597 1.21410 0.95793 0.94682 1.02358 1.22630 0.87461 0.96761 0.96377 0.90814 1.22113 0.93061 0.97884 1.00266 0.87307 1.20463 0.85361 0.79547 0.83910 1.90686 1.59887 1.64761 1.25914 1.45974 1.28991 1.46356 1.15411 1.22689 0.84362 0.91119 1.01402 0.87856 1.23818 0.88794 0.91310 0.99731 1.88780 1.31797 1.30500 1.76554 1.23849 0.90079 0.89677 0.96021 1.22442 0.97334 0.91312 0.88880 1.45300 1.75766 1.02619 1.09356 1.18890 1.39662 0.86437 0.89399 0.89888 1.24841 1.02090 0.96758 0.96610 1.69848 1.54136 1.17978 1.14388 0.86106 0.77793 0.81419 0.80492 1.21543 1.21547 1.20520 1.22453 0.99796 0.85583 0.89549 1.22576 0.96649 0.97467 0.98520 1.22350 0.94061 0.99583 0.99712 1.23111 0.99835 0.89976 0.96620 1.65322 1.09008 1.28534 1.20871 1.22509 1.00769 1.01308 0.88906 0.92945 0.91857 0.93085 0.91371 0.91984 0.76085 0.92095 0.89276 0.93658 0.93989 0.93565 0.94808 0.91277 0.89506 0.89855 0.89689 0.90526 0.89656 0.93600 0.95252 0.91160 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.71 37.16 0.32 -1.09 16 2 C -0.10 -0.92 5.56 -26.73 -0.15 -1.07 16 3 C 0.08 0.73 1.72 -66.08 -0.11 0.62 16 4 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 5 C -0.11 -1.02 2.43 -90.39 -0.22 -1.24 16 6 H 0.11 0.89 7.81 -51.93 -0.41 0.49 16 7 C 0.52 6.04 6.08 -10.99 -0.07 5.97 16 8 O -0.54 -7.84 13.84 5.56 0.08 -7.77 16 9 N -0.72 -8.02 5.06 -51.72 -0.26 -8.28 16 10 C 0.11 1.50 3.51 -65.77 -0.23 1.27 16 11 H 0.10 1.51 7.55 -51.93 -0.39 1.12 16 12 C 0.04 0.62 7.42 38.24 0.28 0.90 16 13 O -0.36 -6.58 11.32 -35.23 -0.40 -6.98 16 14 C 0.04 0.86 1.66 -90.68 -0.15 0.71 16 15 C 0.13 2.68 8.20 -8.03 -0.07 2.62 16 16 N -0.60 -15.32 3.74 -184.63 -0.69 -16.01 16 17 C -0.22 -5.96 10.74 -15.06 -0.16 -6.12 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.56 11.62 55.49 0.64 -25.92 16 21 Si 0.91 21.64 29.56 -169.99 -5.02 16.61 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 3.59 6.84 -7.90 -0.05 3.53 16 26 C -0.11 -1.82 6.20 -25.49 -0.16 -1.98 16 27 C -0.12 -0.95 6.57 -25.35 -0.17 -1.12 16 28 C 0.03 0.27 6.49 -2.19 -0.01 0.25 16 29 N -0.51 -4.55 5.34 -230.37 -1.23 -5.78 16 30 C 0.01 0.10 9.45 60.06 0.57 0.67 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 33 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 34 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.06 0.51 7.39 -51.92 -0.38 0.13 16 36 H 0.40 3.85 8.39 -40.82 -0.34 3.50 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.73 7.11 -51.93 -0.37 1.36 16 44 H 0.09 1.41 7.45 -51.93 -0.39 1.03 16 45 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.39 7.91 -51.93 -0.41 -0.02 16 50 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 51 H 0.07 0.49 7.36 -51.93 -0.38 0.11 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -31.53 402.03 -10.46 -41.99 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.16 Total: 2.42 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.47 Total: 3.66 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -1.54 Total: -55.99 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.32 Total: -14.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.53 -10.46 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053805843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.371 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds