Wall clock time and date at job start Tue Mar 31 2020 19:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47386 * 2 1 4 4 C 1.50708 * 109.47241 * 119.99757 * 2 1 3 5 5 O 1.21277 * 120.00265 * 263.92551 * 4 2 1 6 6 N 1.34770 * 119.99777 * 83.92415 * 4 2 1 7 7 C 1.46498 * 120.00152 * 175.01272 * 6 4 2 8 8 H 1.09002 * 110.97400 * 322.30717 * 7 6 4 9 9 C 1.55022 * 111.10624 * 86.45302 * 7 6 4 10 10 O 1.43905 * 105.18066 * 81.91976 * 9 7 6 11 11 C 1.42395 * 109.55841 * 24.29193 * 10 9 7 12 12 C 1.52705 * 116.14407 * 129.85304 * 11 10 9 13 13 N 1.47212 * 87.79629 * 90.70340 * 12 11 10 14 14 C 1.36931 * 135.97173 * 206.43629 * 13 12 11 15 15 H 1.08007 * 120.00427 * 5.29253 * 14 13 12 16 16 C 1.38811 * 119.99996 * 185.01622 * 14 13 12 17 17 N 1.31617 * 120.00042 * 355.26188 * 16 14 13 18 18 Si 1.86806 * 120.00163 * 175.26223 * 16 14 13 19 19 H 1.48495 * 109.47300 * 94.99344 * 18 16 14 20 20 H 1.48500 * 109.47036 * 214.99916 * 18 16 14 21 21 H 1.48500 * 109.46843 * 334.99824 * 18 16 14 22 22 C 1.47205 * 88.05214 * 26.69266 * 13 12 11 23 23 C 1.53659 * 108.53582 * 358.08925 * 11 10 9 24 24 N 1.46904 * 109.47174 * 239.99941 * 2 1 3 25 25 C 1.48528 * 110.99785 * 66.45074 * 24 2 1 26 26 C 1.54941 * 103.22534 * 159.72428 * 25 24 2 27 27 C 1.54599 * 102.92046 * 322.58234 * 26 25 24 28 28 C 1.47900 * 110.99895 * 183.84670 * 24 2 1 29 29 H 1.09004 * 109.47126 * 304.76630 * 1 2 3 30 30 H 1.08997 * 109.47265 * 64.76502 * 1 2 3 31 31 H 1.09007 * 109.47211 * 184.76710 * 1 2 3 32 32 H 1.08996 * 109.47132 * 186.40886 * 3 2 1 33 33 H 1.08999 * 109.46545 * 306.41570 * 3 2 1 34 34 H 1.09002 * 109.46977 * 66.40916 * 3 2 1 35 35 H 0.97003 * 120.00573 * 355.01208 * 6 4 2 36 36 H 1.09000 * 110.29615 * 322.99620 * 9 7 6 37 37 H 1.08994 * 110.38416 * 200.88679 * 9 7 6 38 38 H 1.09003 * 113.49421 * 335.97094 * 12 11 10 39 39 H 1.09003 * 113.49807 * 205.43898 * 12 11 10 40 40 H 0.97001 * 120.00175 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.49716 * 88.04263 * 22 13 12 42 42 H 1.09001 * 113.49882 * 218.57631 * 22 13 12 43 43 H 1.09000 * 110.92984 * 97.29166 * 23 11 10 44 44 H 1.08993 * 110.93420 * 220.95653 * 23 11 10 45 45 H 1.09005 * 110.66458 * 278.15530 * 25 24 2 46 46 H 1.08996 * 110.66982 * 41.28813 * 25 24 2 47 47 H 1.08999 * 110.72287 * 204.22810 * 26 25 24 48 48 H 1.08994 * 110.87795 * 81.00906 * 26 25 24 49 49 H 1.08997 * 110.30722 * 263.04665 * 27 26 25 50 50 H 1.08996 * 110.39025 * 140.91804 * 27 26 25 51 51 H 1.09002 * 109.92153 * 333.51085 * 28 24 2 52 52 H 1.09001 * 109.92027 * 94.60606 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3393 -0.0732 2.2158 6 7 2.1405 -2.0537 1.2361 7 6 2.7306 -2.7363 2.3902 8 1 3.5633 -2.1636 2.7984 9 6 1.6623 -3.0201 3.4772 10 8 0.9975 -4.2218 3.0475 11 6 1.8633 -4.9680 2.1982 12 6 2.0334 -6.4461 2.5422 13 7 0.8991 -6.7265 1.6467 14 6 -0.0576 -7.7009 1.5452 15 1 -0.1276 -8.4699 2.3003 16 6 -0.9413 -7.6971 0.4747 17 7 -0.9210 -6.7066 -0.3919 18 14 -2.1594 -9.0976 0.2639 19 1 -3.4575 -8.7214 0.8791 20 1 -2.3570 -9.3683 -1.1828 21 1 -1.6318 -10.3165 0.9281 22 6 1.2479 -5.5041 0.9044 23 6 3.1712 -4.1811 2.0212 24 7 2.0196 -0.6925 -1.1995 25 6 1.6747 0.0651 -2.4295 26 6 2.6754 -0.4848 -3.4768 27 6 3.9666 -0.6837 -2.6501 28 6 3.4952 -0.7930 -1.1882 29 1 -0.3633 0.5860 0.8442 30 1 -0.3634 0.4381 -0.9296 31 1 -0.3634 -1.0242 0.0854 32 1 3.1239 1.4446 -0.1147 33 1 1.5859 1.9883 -0.8270 34 1 1.7734 1.9222 0.9418 35 1 1.8276 -2.5687 0.4760 36 1 0.9525 -2.1949 3.5342 37 1 2.1380 -3.1767 4.4453 38 1 1.8285 -6.6753 3.5880 39 1 2.9765 -6.8676 2.1941 40 1 -1.5387 -6.7037 -1.1398 41 1 1.9778 -5.6702 0.1121 42 1 0.3797 -4.9379 0.5671 43 1 3.9382 -4.5414 2.7068 44 1 3.5188 -4.2307 0.9894 45 1 0.6482 -0.1409 -2.7331 46 1 1.8250 1.1339 -2.2779 47 1 2.8361 0.2403 -4.2746 48 1 2.3285 -1.4342 -3.8845 49 1 4.6289 0.1735 -2.7709 50 1 4.4744 -1.5992 -2.9534 51 1 3.9184 0.0211 -0.5997 52 1 3.7989 -1.7517 -0.7677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053891561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:52 Heat of formation + Delta-G solvation = 0.087077 kcal Electronic energy + Delta-G solvation = -31796.768734 eV Core-core repulsion = 27798.840392 eV Total energy + Delta-G solvation = -3997.928342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.89985 -39.81419 -38.33549 -36.26080 -34.42860 -34.15943 -32.08707 -30.47527 -29.52993 -29.01761 -28.16972 -27.36715 -25.66129 -24.74487 -24.11772 -22.17024 -21.66921 -20.95422 -20.70856 -19.26732 -18.98072 -17.54447 -16.79267 -16.41766 -16.08932 -15.62447 -15.33689 -15.02916 -14.75527 -14.53955 -14.35330 -14.15755 -13.75077 -13.55020 -13.43023 -13.25769 -13.04762 -12.80762 -12.60277 -12.27391 -12.23734 -12.01922 -11.78999 -11.66562 -11.58701 -11.49802 -11.36795 -11.32361 -11.25662 -11.22448 -11.04858 -10.81666 -10.62918 -10.44954 -10.23170 -9.77295 -9.64437 -9.46375 -9.00836 -8.77884 -8.60213 -8.49381 -6.81984 -5.71537 -3.02060 2.60765 3.19998 3.43383 3.48090 3.50098 3.68470 4.21567 4.38158 4.44232 4.50080 4.60372 4.68589 4.76112 4.85458 4.92779 5.06856 5.07651 5.12952 5.28531 5.29816 5.38341 5.40346 5.41760 5.51334 5.52935 5.59759 5.63002 5.64879 5.66764 5.69209 5.79795 5.88520 5.91924 5.94494 5.97014 5.99333 6.03788 6.10224 6.15703 6.41846 6.56041 6.59428 6.65191 6.67217 6.75090 6.96701 7.23561 7.56874 7.66726 7.85027 8.04088 8.29362 9.09241 9.76074 10.69415 11.46578 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.003622 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.648003 B = 7727.882537 C = 8794.469862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 C -0.169 4.169 4 C 0.531 3.469 5 O -0.549 6.549 6 N -0.699 5.699 7 C 0.111 3.889 8 H 0.099 0.901 9 C 0.040 3.960 10 O -0.335 6.335 11 C 0.054 3.946 12 C 0.110 3.890 13 N -0.602 5.602 14 C -0.214 4.214 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.157 3.843 23 C -0.143 4.143 24 N -0.502 5.502 25 C 0.030 3.970 26 C -0.123 4.123 27 C -0.129 4.129 28 C 0.025 3.975 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.050 0.950 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 16.801 -3.359 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.010 4.010 3 C -0.228 4.228 4 C 0.316 3.684 5 O -0.426 6.426 6 N -0.351 5.351 7 C 0.006 3.994 8 H 0.117 0.883 9 C -0.038 4.038 10 O -0.253 6.253 11 C 0.012 3.988 12 C -0.017 4.017 13 N -0.327 5.327 14 C -0.342 4.342 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.031 3.969 23 C -0.182 4.182 24 N -0.227 5.227 25 C -0.098 4.098 26 C -0.161 4.161 27 C -0.167 4.167 28 C -0.103 4.103 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.068 0.932 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.021 16.446 -2.727 19.451 hybrid contribution -0.198 -0.209 -0.528 0.602 sum 9.823 16.237 -3.255 19.254 Atomic orbital electron populations 1.21807 0.91007 1.03962 1.02671 1.21385 0.97692 0.92802 0.89161 1.22307 1.01531 0.95543 1.03435 1.20251 0.77052 0.82407 0.88654 1.90676 1.50174 1.66519 1.35239 1.45916 1.61810 1.06492 1.20855 1.22563 0.96136 0.93514 0.87237 0.88315 1.23817 0.95199 0.88528 0.96250 1.88450 1.38385 1.32835 1.65643 1.23500 0.88030 0.91752 0.95479 1.22711 0.92011 0.91056 0.95902 1.45359 1.28298 1.26857 1.32162 1.18899 1.06087 1.03184 1.05995 0.90167 1.24770 0.99810 0.98496 0.97247 1.69834 1.39564 1.31147 1.15921 0.86130 0.81126 0.81685 0.77035 1.21617 1.21648 1.20652 1.22356 0.97288 0.86965 0.90285 1.23211 0.98742 0.92730 1.03533 1.65024 1.10632 1.46079 1.00975 1.23360 1.00442 0.96467 0.89493 1.22472 0.94638 1.01858 0.97137 1.22361 0.97788 1.02170 0.94352 1.23023 0.87947 1.02137 0.97203 0.91545 0.91295 0.90676 0.92060 0.91424 0.90534 0.74673 0.89963 0.91855 0.93691 0.94024 0.93738 0.94718 0.90712 0.89252 0.89295 0.89556 0.92764 0.91199 0.90326 0.91768 0.90800 0.93227 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.53 37.15 0.32 -1.21 16 2 C 0.08 0.94 0.61 -132.75 -0.08 0.86 16 3 C -0.17 -1.72 7.29 37.16 0.27 -1.45 16 4 C 0.53 7.41 5.66 -10.98 -0.06 7.34 16 5 O -0.55 -9.04 15.75 5.56 0.09 -8.96 16 6 N -0.70 -9.68 4.46 -51.50 -0.23 -9.91 16 7 C 0.11 1.53 3.33 -65.54 -0.22 1.31 16 8 H 0.10 1.27 7.82 -51.93 -0.41 0.87 16 9 C 0.04 0.64 7.49 38.23 0.29 0.92 16 10 O -0.33 -6.84 11.18 -35.23 -0.39 -7.23 16 11 C 0.05 1.02 1.75 -90.44 -0.16 0.86 16 12 C 0.11 2.32 8.20 -8.08 -0.07 2.25 16 13 N -0.60 -15.92 3.78 -184.62 -0.70 -16.62 16 14 C -0.21 -6.21 10.74 -15.06 -0.16 -6.37 16 15 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.52 11.59 55.49 0.64 -26.87 16 18 Si 0.91 22.53 29.56 -169.99 -5.02 17.50 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.16 3.68 6.83 -7.94 -0.05 3.62 16 23 C -0.14 -1.99 5.97 -25.07 -0.15 -2.14 16 24 N -0.50 -5.35 4.46 -216.18 -0.96 -6.31 16 25 C 0.03 0.26 5.46 -1.90 -0.01 0.25 16 26 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16 27 C -0.13 -1.06 6.93 -25.37 -0.18 -1.24 16 28 C 0.02 0.25 5.34 -2.75 -0.01 0.23 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.65 6.91 -51.93 -0.36 0.29 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.63 6.01 -51.93 -0.31 0.31 16 33 H 0.07 0.57 6.32 -51.93 -0.33 0.24 16 34 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 35 H 0.42 6.04 8.11 -40.82 -0.33 5.71 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.81 8.13 -51.93 -0.42 0.38 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 0.80 7.95 -51.93 -0.41 0.39 16 42 H 0.07 1.99 7.27 -51.93 -0.38 1.61 16 43 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 44 H 0.09 1.16 7.81 -51.93 -0.41 0.75 16 45 H 0.09 0.76 7.59 -51.93 -0.39 0.37 16 46 H 0.05 0.43 5.56 -51.93 -0.29 0.14 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.51 5.60 -51.93 -0.29 0.22 16 52 H 0.08 0.89 7.74 -51.93 -0.40 0.49 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -33.46 396.78 -10.05 -43.51 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.90 Total: 5.10 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.55 Total: 3.80 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.25 Total: -59.71 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.31 Total: -16.19 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.46 -10.05 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053891561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.598 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds