Wall clock time and date at job start Tue Mar 31 2020 19:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47349 * 2 1 4 4 C 1.50704 * 109.47030 * 119.99609 * 2 1 3 5 5 O 1.21277 * 120.00028 * 263.81066 * 4 2 1 6 6 N 1.34776 * 120.00009 * 83.81083 * 4 2 1 7 7 C 1.46499 * 120.00009 * 175.12696 * 6 4 2 8 8 H 1.09002 * 110.45419 * 32.40189 * 7 6 4 9 9 C 1.54542 * 110.51017 * 269.65072 * 7 6 4 10 10 O 1.44628 * 105.03764 * 217.72007 * 9 7 6 11 11 C 1.43252 * 105.22402 * 39.02693 * 10 9 7 12 12 C 1.52887 * 115.83906 * 90.92807 * 11 10 9 13 13 N 1.47777 * 85.78125 * 94.51400 * 12 11 10 14 14 C 1.36945 * 134.40048 * 203.87017 * 13 12 11 15 15 H 1.07998 * 119.99726 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99849 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00383 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99798 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47025 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46910 * 119.99905 * 18 16 14 21 21 H 1.48491 * 109.47420 * 240.00249 * 18 16 14 22 22 C 1.47782 * 91.19790 * 23.87225 * 13 12 11 23 23 C 1.53464 * 106.25971 * 321.07109 * 11 10 9 24 24 N 1.46905 * 109.47456 * 239.99681 * 2 1 3 25 25 C 1.48527 * 110.99730 * 62.67074 * 24 2 1 26 26 C 1.54942 * 103.22660 * 159.72284 * 25 24 2 27 27 C 1.54595 * 102.91883 * 322.58699 * 26 25 24 28 28 C 1.47896 * 111.00050 * 180.02562 * 24 2 1 29 29 H 1.08998 * 109.47673 * 304.68980 * 1 2 3 30 30 H 1.09005 * 109.47230 * 64.68852 * 1 2 3 31 31 H 1.08996 * 109.47320 * 184.68668 * 1 2 3 32 32 H 1.08998 * 109.47319 * 178.70505 * 3 2 1 33 33 H 1.09008 * 109.47249 * 298.69772 * 3 2 1 34 34 H 1.08995 * 109.47199 * 58.69404 * 3 2 1 35 35 H 0.97004 * 119.99922 * 354.85145 * 6 4 2 36 36 H 1.09000 * 110.33303 * 336.61386 * 9 7 6 37 37 H 1.09008 * 110.32834 * 98.83046 * 9 7 6 38 38 H 1.08999 * 113.82525 * 208.73669 * 12 11 10 39 39 H 1.09010 * 113.82296 * 340.29506 * 12 11 10 40 40 H 0.96996 * 120.00257 * 179.97438 * 17 16 14 41 41 H 1.08994 * 113.82485 * 221.90667 * 22 13 12 42 42 H 1.08996 * 113.93255 * 90.35301 * 22 13 12 43 43 H 1.09006 * 110.57434 * 264.15012 * 23 11 10 44 44 H 1.08994 * 110.57947 * 141.26447 * 23 11 10 45 45 H 1.09002 * 110.67072 * 278.15851 * 25 24 2 46 46 H 1.08999 * 110.66920 * 41.29159 * 25 24 2 47 47 H 1.08998 * 110.72264 * 204.22668 * 26 25 24 48 48 H 1.08998 * 110.72413 * 80.94132 * 26 25 24 49 49 H 1.08996 * 110.30848 * 263.03824 * 27 26 25 50 50 H 1.09000 * 110.31032 * 140.87363 * 27 26 25 51 51 H 1.09000 * 109.92089 * 333.50501 * 28 24 2 52 52 H 1.08997 * 109.92359 * 94.60332 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3411 -0.0730 2.2150 6 7 2.1382 -2.0539 1.2370 7 6 2.7260 -2.7368 2.3922 8 1 2.5050 -2.1918 3.3099 9 6 4.2521 -2.8966 2.2079 10 8 4.5627 -4.1965 2.7605 11 6 3.4753 -5.0421 2.3671 12 6 3.6526 -5.7820 1.0410 13 7 4.1545 -6.9050 1.8600 14 6 4.9745 -7.9750 1.6192 15 1 5.1936 -8.6763 2.4107 16 6 5.5240 -8.1582 0.3577 17 7 5.2566 -7.3038 -0.6071 18 14 6.6432 -9.6174 0.0295 19 1 6.7834 -10.4224 1.2694 20 1 6.0562 -10.4599 -1.0434 21 1 7.9790 -9.1303 -0.3987 22 6 3.4180 -6.4122 3.0427 23 6 2.2041 -4.1906 2.4858 24 7 2.0197 -0.6926 -1.1994 25 6 1.5969 0.0172 -2.4337 26 6 2.5937 -0.5021 -3.5003 27 6 3.9182 -0.6127 -2.7108 28 6 3.4981 -0.7128 -1.2332 29 1 -0.3634 0.5848 0.8449 30 1 -0.3634 0.4394 -0.9290 31 1 -0.3634 -1.0242 0.0840 32 1 3.1297 1.4425 0.0232 33 1 1.6959 1.9496 -0.9015 34 1 1.6577 1.9630 0.8780 35 1 1.8217 -2.5690 0.4784 36 1 4.5114 -2.8631 1.1498 37 1 4.7831 -2.1164 2.7535 38 1 2.7153 -5.9959 0.5274 39 1 4.4066 -5.3415 0.3884 40 1 5.6409 -7.4317 -1.4884 41 1 3.9865 -6.4696 3.9708 42 1 2.4096 -6.8155 3.1353 43 1 1.7168 -4.3615 3.4458 44 1 1.5207 -4.4058 1.6645 45 1 0.5744 -0.2502 -2.7003 46 1 1.6938 1.0958 -2.3096 47 1 2.6904 0.2122 -4.3179 48 1 2.2847 -1.4783 -3.8740 49 1 4.5292 0.2756 -2.8706 50 1 4.4640 -1.5072 -3.0109 51 1 3.8940 0.1364 -0.6762 52 1 3.8668 -1.6436 -0.8023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053891562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:54 Heat of formation + Delta-G solvation = -26.765618 kcal Electronic energy + Delta-G solvation = -31545.399520 eV Core-core repulsion = 27546.306757 eV Total energy + Delta-G solvation = -3999.092762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96573 -41.17600 -39.42172 -37.75376 -35.62701 -35.28413 -34.13716 -31.64437 -30.31331 -29.88521 -29.72903 -28.16610 -27.55975 -26.67225 -25.09688 -23.89297 -22.70767 -21.89033 -21.64024 -20.63950 -20.27841 -18.74282 -18.46957 -17.54297 -17.00984 -16.90932 -16.72072 -16.57398 -16.36751 -15.91159 -15.58357 -15.31308 -15.15504 -14.83893 -14.63149 -14.38555 -14.26023 -14.11548 -13.63637 -13.42810 -13.23792 -13.15544 -13.03642 -12.97810 -12.93184 -12.75549 -12.64429 -12.60133 -12.48503 -12.31923 -12.21454 -12.06130 -11.90072 -11.77684 -11.64862 -11.32404 -11.29582 -10.93466 -10.77785 -10.54540 -10.04690 -9.43490 -8.92035 -7.89963 -5.22509 1.44125 1.45750 1.51360 1.55720 2.09851 2.46810 2.85038 2.88339 3.28058 3.40391 3.48445 3.55901 3.68881 3.71249 3.77263 3.87283 3.97737 4.01977 4.08372 4.11063 4.21935 4.32612 4.56178 4.58607 4.60408 4.64187 4.67496 4.72776 4.74575 4.81747 4.83551 4.86753 4.89623 4.91077 4.94126 4.96188 5.00436 5.10620 5.15595 5.17923 5.21142 5.25165 5.30461 5.35405 5.48417 5.50716 5.82520 5.91944 5.92767 6.10196 6.54512 6.92333 7.19359 7.60510 8.54826 9.27134 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.003350 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.643319 B = 8355.580441 C = 9731.928217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.084 3.916 3 C -0.166 4.166 4 C 0.528 3.472 5 O -0.579 6.579 6 N -0.697 5.697 7 C 0.124 3.876 8 H 0.103 0.897 9 C 0.038 3.962 10 O -0.366 6.366 11 C 0.072 3.928 12 C 0.155 3.845 13 N -0.640 5.640 14 C -0.234 4.234 15 H 0.082 0.918 16 C -0.066 4.066 17 N -0.952 5.952 18 Si 0.977 3.023 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.294 1.294 22 C 0.127 3.873 23 C -0.131 4.131 24 N -0.507 5.507 25 C 0.030 3.970 26 C -0.118 4.118 27 C -0.130 4.130 28 C 0.024 3.976 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.248 0.752 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 19.176 -3.381 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.009 4.009 3 C -0.225 4.225 4 C 0.315 3.685 5 O -0.458 6.458 6 N -0.349 5.349 7 C 0.018 3.982 8 H 0.121 0.879 9 C -0.040 4.040 10 O -0.284 6.284 11 C 0.032 3.968 12 C 0.030 3.970 13 N -0.367 5.367 14 C -0.362 4.362 15 H 0.099 0.901 16 C -0.259 4.259 17 N -0.601 5.601 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.221 1.221 22 C 0.003 3.997 23 C -0.169 4.169 24 N -0.232 5.232 25 C -0.096 4.096 26 C -0.156 4.156 27 C -0.168 4.168 28 C -0.104 4.104 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.319 18.792 -2.668 22.628 hybrid contribution 1.277 -0.436 -0.707 1.524 sum -11.041 18.356 -3.375 21.685 Atomic orbital electron populations 1.21815 0.89483 1.03623 1.04017 1.21397 0.98587 0.92725 0.88150 1.22286 1.01253 0.95123 1.03818 1.20847 0.76188 0.82335 0.89131 1.90676 1.51481 1.66898 1.36701 1.45989 1.61524 1.06767 1.20647 1.22211 0.91729 0.93604 0.90630 0.87919 1.23873 0.96083 0.85372 0.98668 1.88992 1.44810 1.20380 1.74223 1.23416 0.86023 0.90945 0.96460 1.22492 0.95812 0.85884 0.92837 1.46251 1.52703 1.28464 1.09266 1.19440 1.19580 1.01279 0.95941 0.90067 1.25587 1.02697 1.01901 0.95714 1.70004 1.49213 1.38664 1.02244 0.85027 0.77850 0.78689 0.77885 1.19045 1.21530 1.22096 1.22755 0.96473 0.88856 0.91636 1.22946 0.96886 0.91527 1.05577 1.65027 1.08294 1.48420 1.01502 1.23466 1.00549 0.97490 0.88099 1.22473 0.93467 1.02176 0.97529 1.22352 0.98690 1.02337 0.93459 1.22955 0.88583 1.00788 0.98110 0.91453 0.89126 0.91220 0.93157 0.89042 0.91464 0.74595 0.93169 0.88825 0.94516 0.94554 0.94338 0.92974 0.90331 0.87154 0.88119 0.88223 0.91558 0.89233 0.91201 0.90613 0.91951 0.93529 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.47 71.98 0.61 -1.20 16 2 C 0.08 1.55 0.61 2.78 0.00 1.55 16 3 C -0.17 -2.88 7.32 71.98 0.53 -2.35 16 4 C 0.53 13.16 5.80 87.66 0.51 13.67 16 5 O -0.58 -18.29 15.73 -3.02 -0.05 -18.34 16 6 N -0.70 -16.79 4.62 -437.24 -2.02 -18.82 16 7 C 0.12 3.38 3.53 46.11 0.16 3.54 16 8 H 0.10 2.83 7.49 -2.39 -0.02 2.81 16 9 C 0.04 1.27 7.37 72.51 0.53 1.80 16 10 O -0.37 -15.17 11.44 -148.98 -1.70 -16.87 16 11 C 0.07 2.77 1.28 -10.66 -0.01 2.76 16 12 C 0.16 7.45 6.99 86.10 0.60 8.05 16 13 N -0.64 -34.10 3.71 -741.18 -2.75 -36.85 16 14 C -0.23 -13.67 10.70 84.03 0.90 -12.78 16 15 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.95 -58.63 11.40 21.65 0.25 -58.39 16 18 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 C 0.13 5.24 8.47 86.09 0.73 5.96 16 23 C -0.13 -3.51 6.25 31.34 0.20 -3.31 16 24 N -0.51 -9.03 4.44 -838.01 -3.72 -12.75 16 25 C 0.03 0.39 5.34 86.65 0.46 0.85 16 26 C -0.12 -1.65 7.06 31.80 0.22 -1.43 16 27 C -0.13 -2.34 6.93 31.45 0.22 -2.13 16 28 C 0.02 0.50 5.47 86.43 0.47 0.97 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.87 6.78 -2.38 -0.02 0.85 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.02 6.04 -2.39 -0.01 1.00 16 33 H 0.09 1.12 5.95 -2.38 -0.01 1.11 16 34 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 35 H 0.42 9.40 7.87 -92.71 -0.73 8.67 16 36 H 0.05 1.78 8.02 -2.39 -0.02 1.76 16 37 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.04 1.72 7.96 -2.39 -0.02 1.70 16 39 H 0.04 2.02 7.20 -2.38 -0.02 2.00 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.11 2.46 8.12 -2.38 -0.02 2.44 16 44 H 0.10 2.43 7.39 -2.39 -0.02 2.41 16 45 H 0.10 1.03 7.56 -2.39 -0.02 1.01 16 46 H 0.07 0.71 5.55 -2.39 -0.01 0.70 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 51 H 0.05 1.03 5.50 -2.39 -0.01 1.02 16 52 H 0.06 1.56 7.94 -2.39 -0.02 1.55 16 Total: -1.00 -74.09 396.00 -1.18 -75.27 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.19 Total: 25.16 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.60 Total: 12.55 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -8.25 Total: -126.80 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.75 Total: -35.22 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.09 -1.18 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053891562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.505 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds