Wall clock time and date at job start Tue Mar 31 2020 19:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 C 1.50707 * 109.47099 * 119.99680 * 2 1 3 5 5 O 1.21278 * 120.00290 * 0.02562 * 4 2 1 6 6 N 1.34782 * 119.99569 * 180.02562 * 4 2 1 7 7 C 1.46498 * 119.99520 * 179.97438 * 6 4 2 8 8 H 1.08999 * 109.73708 * 35.41143 * 7 6 4 9 9 C 1.53336 * 109.60442 * 274.99784 * 7 6 4 10 10 C 1.53079 * 108.42681 * 172.71381 * 9 7 6 11 11 C 1.50177 * 109.88865 * 48.90031 * 10 9 7 12 12 O 1.21281 * 118.24601 * 162.41885 * 11 10 9 13 13 N 1.33360 * 123.50762 * 342.69784 * 11 10 9 14 14 C 1.45732 * 124.11980 * 1.65350 * 13 11 10 15 15 H 1.09001 * 109.09380 * 101.64893 * 14 13 11 16 16 C 1.53005 * 109.44434 * 220.98290 * 14 13 11 17 17 C 1.53043 * 109.45680 * 61.23162 * 16 14 13 18 18 C 1.53194 * 109.30862 * 178.60380 * 17 16 14 19 19 N 1.46929 * 108.76707 * 54.65130 * 18 17 16 20 20 C 1.36939 * 120.62372 * 126.36054 * 19 18 17 21 21 H 1.07996 * 120.00699 * 331.84552 * 20 19 18 22 22 C 1.38817 * 119.99522 * 151.84586 * 20 19 18 23 23 N 1.31617 * 120.00096 * 343.08339 * 22 20 19 24 24 Si 1.86800 * 119.99880 * 163.07789 * 22 20 19 25 25 H 1.48493 * 109.47039 * 59.99812 * 24 22 20 26 26 H 1.48496 * 109.47232 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46878 * 300.00043 * 24 22 20 28 28 C 1.46922 * 118.74112 * 306.38836 * 19 18 17 29 29 C 1.53038 * 109.45882 * 301.17837 * 16 14 13 30 30 H 1.09001 * 109.47346 * 299.99954 * 1 2 3 31 31 H 1.08998 * 109.47626 * 60.00096 * 1 2 3 32 32 H 1.09009 * 109.47014 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47346 * 240.00046 * 2 1 3 34 34 H 1.08999 * 109.46978 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46780 * 299.99817 * 3 2 1 36 36 H 1.08993 * 109.47645 * 60.00083 * 3 2 1 37 37 H 0.97000 * 119.99951 * 359.97438 * 6 4 2 38 38 H 1.08993 * 109.67592 * 52.98459 * 9 7 6 39 39 H 1.08999 * 109.67624 * 292.44779 * 9 7 6 40 40 H 1.09002 * 109.39652 * 288.77511 * 10 9 7 41 41 H 1.08995 * 109.40062 * 169.02844 * 10 9 7 42 42 H 0.96997 * 117.94373 * 181.92209 * 13 11 10 43 43 H 1.08998 * 109.45552 * 181.20558 * 16 14 13 44 44 H 1.08995 * 109.49595 * 298.56788 * 17 16 14 45 45 H 1.08996 * 109.49927 * 58.66414 * 17 16 14 46 46 H 1.09000 * 109.59584 * 294.86500 * 18 17 16 47 47 H 1.08998 * 109.70546 * 174.50872 * 18 17 16 48 48 H 0.97003 * 119.99949 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58532 * 293.81583 * 28 19 18 50 50 H 1.08998 * 109.58784 * 173.39228 * 28 19 18 51 51 H 1.09004 * 109.49767 * 301.33542 * 29 16 14 52 52 H 1.09002 * 109.49899 * 61.39908 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.2442 -1.1717 2.0287 6 7 3.3574 -0.8330 1.4440 7 6 3.8458 -1.5230 2.6405 8 1 3.1803 -2.3509 2.8854 9 6 3.8981 -0.5399 3.8161 10 6 4.2338 -1.3235 5.0876 11 6 5.4179 -2.2139 4.8413 12 8 6.0152 -2.6530 5.8011 13 7 5.8508 -2.5432 3.6237 14 6 5.2559 -2.0568 2.3853 15 1 5.8765 -1.2566 1.9819 16 6 5.1882 -3.1992 1.3697 17 6 4.3073 -4.3216 1.9230 18 6 4.2135 -5.4483 0.8892 19 7 5.5730 -5.8715 0.5267 20 6 5.9407 -7.1876 0.6149 21 1 5.4614 -7.8353 1.3339 22 6 6.9298 -7.6893 -0.2201 23 7 7.2787 -7.0239 -1.3007 24 14 7.7655 -9.3088 0.1902 25 1 6.7507 -10.3919 0.2355 26 1 8.7776 -9.6211 -0.8506 27 1 8.4330 -9.2003 1.5123 28 6 6.5305 -4.8557 0.0683 29 6 6.5980 -3.7356 1.1111 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.9877 -0.4644 0.8055 38 1 2.9299 -0.0526 3.9304 39 1 4.6676 0.2101 3.6333 40 1 3.3765 -1.9323 5.3746 41 1 4.4666 -0.6258 5.8919 42 1 6.6068 -3.1473 3.5580 43 1 4.7631 -2.8304 0.4363 44 1 4.7452 -4.7077 2.8434 45 1 3.3099 -3.9333 2.1291 46 1 3.6941 -5.0875 0.0014 47 1 3.6690 -6.2919 1.3134 48 1 7.9696 -7.3747 -1.8843 49 1 6.2001 -4.4467 -0.8864 50 1 7.5156 -5.3077 -0.0467 51 1 7.2313 -2.9301 0.7393 52 1 7.0144 -4.1268 2.0394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070366965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:44 Heat of formation + Delta-G solvation = -72.205148 kcal Electronic energy + Delta-G solvation = -31527.578890 eV Core-core repulsion = 27526.515722 eV Total energy + Delta-G solvation = -4001.063168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.05969 -39.72106 -38.11566 -36.46517 -34.72456 -34.33372 -33.33474 -32.22312 -30.64111 -29.98262 -28.35576 -27.34337 -25.76968 -24.04202 -23.89015 -22.85113 -21.73008 -21.14341 -20.34915 -19.62609 -18.80612 -17.38965 -17.13195 -16.88384 -16.13578 -15.93171 -15.44186 -15.15250 -14.84409 -14.63726 -14.25391 -14.06548 -13.96819 -13.90372 -13.58884 -13.50235 -13.08163 -13.00913 -12.73835 -12.61739 -12.50779 -12.35286 -12.06923 -11.80360 -11.61355 -11.49420 -11.44485 -11.34482 -11.16376 -10.97965 -10.73134 -10.69903 -10.35615 -10.26930 -9.96308 -9.90674 -9.81239 -9.65368 -9.44456 -9.22573 -8.96307 -8.49031 -6.69777 -5.81817 -3.23845 2.48094 2.67175 2.79153 3.37834 3.41041 3.43179 3.45576 4.26303 4.37661 4.48023 4.48342 4.58139 4.59666 4.67214 4.75197 4.98444 5.05089 5.10198 5.16156 5.25368 5.29741 5.38802 5.40037 5.51134 5.54528 5.55496 5.59823 5.65320 5.66358 5.72370 5.81850 5.84238 5.93911 6.00698 6.05890 6.22344 6.24234 6.44477 6.47894 6.54274 6.64465 6.77107 6.83264 6.94791 7.27510 7.28976 7.38952 7.58750 7.77716 8.05056 8.24301 8.42698 9.19255 9.82318 10.38686 11.26765 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.003593 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.071660 B = 7789.981283 C = 9381.964732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.521 3.479 5 O -0.536 6.536 6 N -0.719 5.719 7 C 0.132 3.868 8 H 0.106 0.894 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.517 3.483 12 O -0.561 6.561 13 N -0.702 5.702 14 C 0.138 3.862 15 H 0.075 0.925 16 C -0.088 4.088 17 C -0.129 4.129 18 C 0.147 3.853 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.173 3.827 29 C -0.139 4.139 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.407 0.593 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.051 0.949 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 20.096 2.559 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.307 3.693 5 O -0.411 6.411 6 N -0.371 5.371 7 C 0.027 3.973 8 H 0.124 0.876 9 C -0.171 4.171 10 C -0.172 4.172 11 C 0.304 3.696 12 O -0.440 6.440 13 N -0.356 5.356 14 C 0.032 3.968 15 H 0.093 0.907 16 C -0.107 4.107 17 C -0.168 4.168 18 C 0.021 3.979 19 N -0.313 5.313 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.047 3.953 29 C -0.178 4.178 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.106 0.894 51 H 0.069 0.931 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.787 19.611 3.514 21.775 hybrid contribution 1.105 -0.892 -0.365 1.466 sum -7.683 18.720 3.149 20.478 Atomic orbital electron populations 1.21610 0.92433 1.03027 1.01970 1.21323 0.98471 0.97204 0.96750 1.21789 1.01183 0.94228 1.02921 1.20688 0.81836 0.79215 0.87521 1.90709 1.55200 1.48102 1.47138 1.45853 1.07369 1.58876 1.24979 1.21275 0.95393 0.95696 0.84961 0.87575 1.22074 1.03145 0.98301 0.93625 1.21588 0.97241 0.99075 0.99312 1.20166 0.85534 0.81251 0.82641 1.90763 1.57475 1.55432 1.40329 1.45565 1.35451 1.49871 1.04742 1.21252 0.92695 0.97355 0.85512 0.90691 1.21438 0.98375 0.93984 0.96880 1.22098 0.97646 0.96718 1.00304 1.20863 0.88172 0.94602 0.94297 1.44024 1.05850 1.03952 1.77498 1.19153 1.19169 0.86275 1.13681 0.91812 1.25020 1.01616 0.97897 0.94948 1.70011 1.32731 1.39909 1.12179 0.86381 0.79339 0.83623 0.77521 1.20879 1.21626 1.21000 1.20729 0.96318 0.86885 0.91339 1.22290 0.94003 0.99761 1.01769 0.92033 0.92076 0.91789 0.88192 0.92112 0.91361 0.92121 0.76389 0.90099 0.91049 0.87995 0.88003 0.75465 0.90361 0.92119 0.93046 0.96690 0.92912 0.93615 0.96449 0.89421 0.93069 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.48 37.16 0.32 -0.74 16 2 C -0.12 -0.86 3.26 -91.77 -0.30 -1.16 16 3 C -0.14 -0.76 9.09 37.16 0.34 -0.43 16 4 C 0.52 5.36 7.12 -10.98 -0.08 5.28 16 5 O -0.54 -7.61 15.66 5.56 0.09 -7.53 16 6 N -0.72 -6.20 4.62 -53.67 -0.25 -6.44 16 7 C 0.13 1.36 1.73 -67.80 -0.12 1.24 16 8 H 0.11 1.37 5.41 -51.93 -0.28 1.09 16 9 C -0.13 -1.20 5.62 -26.52 -0.15 -1.35 16 10 C -0.13 -1.37 6.03 -28.09 -0.17 -1.54 16 11 C 0.52 7.18 7.71 -11.87 -0.09 7.09 16 12 O -0.56 -10.16 17.78 5.56 0.10 -10.06 16 13 N -0.70 -9.02 4.43 -54.86 -0.24 -9.26 16 14 C 0.14 1.51 2.33 -68.38 -0.16 1.35 16 15 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 16 C -0.09 -1.22 1.94 -90.58 -0.18 -1.40 16 17 C -0.13 -2.12 4.89 -26.61 -0.13 -2.25 16 18 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 19 N -0.59 -14.29 2.99 -172.32 -0.52 -14.80 16 20 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 21 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 23 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 24 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.17 3.85 5.30 -3.72 -0.02 3.83 16 29 C -0.14 -2.30 5.09 -26.61 -0.14 -2.44 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 2.51 8.01 -40.82 -0.33 2.18 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.41 5.76 6.74 -40.82 -0.28 5.48 16 43 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 44 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 45 H 0.05 0.79 6.17 -51.93 -0.32 0.47 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 51 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -33.10 397.23 -9.30 -42.40 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.93 Total: 4.67 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.13 Total: 3.47 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.39 Total: -55.57 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.19 Total: -17.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.10 -9.30 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070366965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.807 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds