Wall clock time and date at job start Tue Mar 31 2020 20:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47344 * 2 1 4 4 H 1.08998 * 109.46974 * 54.99328 * 3 2 1 5 5 C 1.53004 * 109.46698 * 294.99599 * 3 2 1 6 6 C 1.50694 * 109.47244 * 174.99968 * 3 2 1 7 7 O 1.21287 * 120.00242 * 7.06863 * 6 3 2 8 8 N 1.34772 * 120.00194 * 187.07100 * 6 3 2 9 9 C 1.46932 * 120.62766 * 3.19699 * 8 6 3 10 10 C 1.53194 * 108.77157 * 126.41504 * 9 8 6 11 11 C 1.53047 * 109.34021 * 54.62049 * 10 9 8 12 12 C 1.53036 * 109.53874 * 298.68553 * 11 10 9 13 13 H 1.09005 * 109.49448 * 301.34638 * 12 11 10 14 14 N 1.46503 * 109.49610 * 181.28322 * 12 11 10 15 15 C 1.45654 * 117.70508 * 120.06211 * 14 12 11 16 16 C 1.52979 * 110.77148 * 158.09783 * 15 14 12 17 17 N 1.47268 * 108.18921 * 46.72546 * 16 15 14 18 18 C 1.36936 * 121.35329 * 118.47264 * 17 16 15 19 19 H 1.07998 * 120.00107 * 330.74502 * 18 17 16 20 20 C 1.38816 * 120.00011 * 151.02202 * 18 17 16 21 21 N 1.31625 * 119.99457 * 162.02404 * 20 18 17 22 22 Si 1.86796 * 120.00000 * 342.03070 * 20 18 17 23 23 H 1.48499 * 109.47303 * 87.37295 * 22 20 18 24 24 H 1.48508 * 109.47012 * 207.37131 * 22 20 18 25 25 H 1.48499 * 109.47140 * 327.37018 * 22 20 18 26 26 C 1.47047 * 117.29401 * 298.74290 * 17 16 15 27 27 C 1.33379 * 117.70355 * 300.08144 * 14 12 11 28 28 O 1.21278 * 118.49083 * 4.32088 * 27 14 12 29 29 C 1.46922 * 120.63409 * 183.22849 * 8 6 3 30 30 H 1.09007 * 109.46811 * 60.00135 * 1 2 3 31 31 H 1.08992 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47246 * 300.01140 * 1 2 3 33 33 H 1.09002 * 109.47507 * 239.99583 * 2 1 3 34 34 H 1.09006 * 109.47075 * 119.99384 * 2 1 3 35 35 H 1.08995 * 109.47279 * 185.40647 * 5 3 2 36 36 H 1.09000 * 109.47283 * 305.40751 * 5 3 2 37 37 H 1.09004 * 109.46964 * 65.40729 * 5 3 2 38 38 H 1.08996 * 109.58725 * 246.20111 * 9 8 6 39 39 H 1.08994 * 109.58849 * 6.63241 * 9 8 6 40 40 H 1.09004 * 109.49740 * 174.58443 * 10 9 8 41 41 H 1.09001 * 109.50209 * 294.65278 * 10 9 8 42 42 H 1.08997 * 109.48875 * 178.64104 * 11 10 9 43 43 H 1.09002 * 109.42882 * 58.68400 * 11 10 9 44 44 H 1.09007 * 109.21472 * 37.76673 * 15 14 12 45 45 H 1.08996 * 109.18085 * 278.40982 * 15 14 12 46 46 H 1.09005 * 109.72526 * 287.05284 * 16 15 14 47 47 H 1.09001 * 109.75494 * 166.41946 * 16 15 14 48 48 H 0.96998 * 119.99231 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.56823 * 162.30703 * 26 17 16 50 50 H 1.08991 * 109.56976 * 282.66648 * 26 17 16 51 51 H 1.08998 * 109.59500 * 113.79812 * 29 8 6 52 52 H 1.08996 * 109.58758 * 353.36643 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6354 2.1265 -1.3075 6 6 3.5419 1.4443 0.1238 7 8 4.1557 0.3993 0.0752 8 7 4.2031 2.6070 0.2887 9 6 3.4695 3.8733 0.4196 10 6 3.9300 4.5800 1.6984 11 6 5.4524 4.7355 1.6714 12 6 6.1072 3.3532 1.6199 13 1 5.7978 2.7716 2.4884 14 7 7.5646 3.5021 1.6250 15 6 8.3043 2.8874 2.7188 16 6 9.7640 2.6557 2.3240 17 7 10.2714 3.8874 1.6961 18 6 11.3171 4.5852 2.2389 19 1 11.4862 4.5620 3.3053 20 6 12.1564 5.3272 1.4191 21 7 12.9236 6.2629 1.9371 22 14 12.1969 4.9977 -0.4191 23 1 11.1460 5.8045 -1.0899 24 1 13.5285 5.3717 -0.9599 25 1 11.9484 3.5552 -0.6691 26 6 9.6055 4.3409 0.4659 27 6 8.1210 4.1915 0.6279 28 8 7.3938 4.7245 -0.1833 29 6 5.6712 2.6326 0.3402 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0794 3.1210 -1.3498 36 1 1.9888 1.5345 -2.1517 37 1 0.5495 2.2111 -1.3522 38 1 3.6770 4.5067 -0.4429 39 1 2.4000 3.6716 0.4786 40 1 3.4649 5.5640 1.7580 41 1 3.6402 3.9874 2.5661 42 1 5.7803 5.2596 2.5690 43 1 5.7428 5.3079 0.7904 44 1 7.8446 1.9315 2.9702 45 1 8.2676 3.5429 3.5889 46 1 9.8269 1.8293 1.6161 47 1 10.3536 2.4255 3.2114 48 1 13.5103 6.7810 1.3643 49 1 9.8486 5.3877 0.2838 50 1 9.9409 3.7346 -0.3755 51 1 6.0583 3.1648 -0.5286 52 1 6.0544 1.6123 0.3469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:40 Heat of formation + Delta-G solvation = -61.983254 kcal Electronic energy + Delta-G solvation = -31346.482774 eV Core-core repulsion = 27345.862860 eV Total energy + Delta-G solvation = -4000.619914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14108 -41.08903 -38.49491 -37.90186 -36.53411 -36.14311 -34.07821 -33.28102 -31.81096 -30.91634 -30.26410 -28.26746 -27.05667 -25.70063 -25.61823 -24.53008 -23.21000 -22.74929 -21.35967 -20.31139 -19.81625 -18.73234 -18.23402 -18.09582 -17.33749 -17.23900 -16.69093 -16.61457 -16.24476 -16.02765 -15.70251 -15.36911 -15.23353 -14.87511 -14.70864 -14.64235 -14.51093 -14.22424 -14.15804 -13.96443 -13.81902 -13.41820 -13.23885 -13.05836 -12.97631 -12.78357 -12.63858 -12.58055 -12.44095 -12.39994 -12.22089 -11.97280 -11.84635 -11.75030 -11.69012 -11.60631 -11.57776 -11.00970 -10.74797 -10.57063 -10.02285 -9.48625 -9.07890 -8.24052 -5.62704 1.27451 1.35941 1.41741 1.45992 1.56668 1.69628 2.18163 2.34206 2.88075 3.19406 3.41735 3.48399 3.75806 3.85229 3.86107 3.90659 3.97368 4.01515 4.06386 4.16899 4.28302 4.31227 4.37506 4.38679 4.46567 4.51689 4.52870 4.57008 4.62633 4.70785 4.73399 4.75593 4.86355 4.90085 4.93901 4.99416 5.05580 5.06831 5.12188 5.14956 5.20787 5.22693 5.37675 5.40948 5.51257 5.62174 5.73948 6.06394 6.33648 6.40830 6.69640 7.05094 7.11390 7.46273 7.87033 8.94795 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.002777 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.589918 B =10078.873783 C =10136.188091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.102 4.102 4 H 0.124 0.876 5 C -0.147 4.147 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.121 4.121 11 C -0.139 4.139 12 C 0.136 3.864 13 H 0.104 0.896 14 N -0.588 5.588 15 C 0.102 3.898 16 C 0.125 3.875 17 N -0.616 5.616 18 C -0.248 4.248 19 H 0.070 0.930 20 C -0.023 4.023 21 N -0.948 5.948 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.303 1.303 25 H -0.261 1.261 26 C 0.108 3.892 27 C 0.516 3.484 28 O -0.576 6.576 29 C 0.105 3.895 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.264 0.736 49 H 0.080 0.920 50 H 0.059 0.941 51 H 0.065 0.935 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.349 -8.554 -0.698 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.123 4.123 4 H 0.142 0.858 5 C -0.205 4.205 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.336 5.336 9 C -0.021 4.021 10 C -0.159 4.159 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.122 0.878 14 N -0.319 5.319 15 C -0.021 4.021 16 C 0.000 4.000 17 N -0.342 5.342 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.220 4.220 21 N -0.593 5.593 22 Si 0.758 3.242 23 H -0.205 1.205 24 H -0.231 1.231 25 H -0.186 1.186 26 C -0.020 4.020 27 C 0.304 3.696 28 O -0.457 6.457 29 C -0.019 4.019 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.115 0.885 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.227 -8.725 -1.129 29.566 hybrid contribution 1.380 0.210 -0.928 1.677 sum -26.847 -8.515 -2.057 28.240 Atomic orbital electron populations 1.21799 0.93150 1.02440 1.03019 1.21329 0.97188 0.93963 1.01786 1.21413 0.88577 0.99835 1.02429 0.85780 1.21952 1.03868 1.00399 0.94233 1.21553 0.91735 0.82206 0.74464 1.90666 1.70926 1.32883 1.52508 1.48152 1.05775 1.08164 1.71494 1.22165 0.97831 0.83504 0.98573 1.21882 0.93567 1.02510 0.97982 1.21977 0.96736 0.96004 1.02970 1.21522 0.79104 0.97849 0.98346 0.87772 1.47317 1.07415 1.52412 1.24796 1.22114 0.92918 0.98847 0.88265 1.21590 0.92583 0.87039 0.98783 1.44521 1.36186 1.26239 1.27294 1.18813 1.03212 1.23303 0.92343 0.91247 1.25868 0.96894 0.97837 1.01359 1.69905 1.29561 1.22831 1.36980 0.86202 0.75972 0.79175 0.82816 1.20549 1.23082 1.18576 1.21452 0.88535 1.00651 0.91322 1.20605 0.91184 0.77241 0.80562 1.90542 1.62264 1.48746 1.44142 1.21712 0.81001 1.00558 0.98671 0.91298 0.92410 0.91376 0.93215 0.92941 0.91203 0.93532 0.88473 0.91217 0.85891 0.88055 0.90212 0.92132 0.91283 0.87474 0.91370 0.93265 0.88484 0.92687 0.90228 0.92324 0.91669 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 71.98 0.70 -0.64 16 2 C -0.10 -1.61 4.70 30.60 0.14 -1.46 16 3 C -0.10 -1.43 1.87 -11.54 -0.02 -1.45 16 4 H 0.12 1.05 7.17 -2.39 -0.02 1.03 16 5 C -0.15 -1.60 8.41 71.98 0.61 -0.99 16 6 C 0.51 11.98 7.00 87.66 0.61 12.60 16 7 O -0.59 -19.28 15.41 -3.05 -0.05 -19.32 16 8 N -0.60 -13.42 2.97 -818.92 -2.43 -15.86 16 9 C 0.10 1.50 4.92 86.36 0.43 1.92 16 10 C -0.12 -1.82 6.08 30.67 0.19 -1.63 16 11 C -0.14 -3.39 5.03 30.62 0.15 -3.23 16 12 C 0.14 3.57 2.61 45.07 0.12 3.69 16 13 H 0.10 2.34 7.73 -2.38 -0.02 2.32 16 14 N -0.59 -18.78 2.79 -802.41 -2.24 -21.01 16 15 C 0.10 2.83 6.45 86.53 0.56 3.39 16 16 C 0.12 4.22 6.61 86.23 0.57 4.79 16 17 N -0.62 -27.75 2.76 -704.14 -1.94 -29.69 16 18 C -0.25 -13.35 10.10 84.03 0.85 -12.50 16 19 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 20 C -0.02 -1.34 5.28 84.86 0.45 -0.89 16 21 N -0.95 -58.08 13.97 21.65 0.30 -57.78 16 22 Si 0.93 46.04 24.19 68.60 1.66 47.70 16 23 H -0.28 -13.57 6.55 99.48 0.65 -12.92 16 24 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 25 H -0.26 -12.35 6.68 99.48 0.66 -11.69 16 26 C 0.11 4.83 4.28 85.33 0.37 5.20 16 27 C 0.52 20.38 6.95 87.68 0.61 20.99 16 28 O -0.58 -24.06 12.49 -3.02 -0.04 -24.10 16 29 C 0.10 3.00 5.66 86.36 0.49 3.49 16 30 H 0.07 0.48 6.69 -2.38 -0.02 0.47 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.96 8.06 -2.38 -0.02 0.94 16 35 H 0.07 0.71 5.92 -2.39 -0.01 0.69 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.56 6.84 -2.38 -0.02 0.54 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 0.96 5.00 -2.39 -0.01 0.95 16 40 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.15 5.79 -2.39 -0.01 2.14 16 44 H 0.11 2.22 7.94 -2.38 -0.02 2.20 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.10 3.08 7.96 -2.39 -0.02 3.06 16 48 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 49 H 0.08 3.96 5.52 -2.39 -0.01 3.94 16 50 H 0.06 2.61 6.30 -2.39 -0.02 2.60 16 51 H 0.07 2.24 5.97 -2.39 -0.01 2.22 16 52 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 Total: -1.00 -73.99 382.23 2.88 -71.11 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.81 Total: 15.67 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 6.81 Total: 33.28 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.31 Total: -124.34 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.08 Total: -43.42 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.66 Total: 47.70 kcal Total: -73.99 2.88 -71.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.125 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds