Wall clock time and date at job start Tue Mar 31 2020 20:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47024 * 2 1 4 4 H 1.09001 * 109.47044 * 304.99999 * 3 2 1 5 5 C 1.53002 * 109.47295 * 64.99968 * 3 2 1 6 6 C 1.50703 * 109.46990 * 184.99749 * 3 2 1 7 7 O 1.21273 * 120.00315 * 345.60181 * 6 3 2 8 8 N 1.34778 * 119.99772 * 165.60098 * 6 3 2 9 9 C 1.46927 * 120.63225 * 185.57975 * 8 6 3 10 10 C 1.53189 * 108.77773 * 126.38947 * 9 8 6 11 11 C 1.53038 * 109.31379 * 54.63637 * 10 9 8 12 12 C 1.53041 * 109.53643 * 298.63261 * 11 10 9 13 13 H 1.08996 * 109.50236 * 301.38431 * 12 11 10 14 14 N 1.46502 * 109.49737 * 181.31825 * 12 11 10 15 15 C 1.45646 * 117.70653 * 120.06643 * 14 12 11 16 16 C 1.52983 * 110.77337 * 158.09836 * 15 14 12 17 17 N 1.47266 * 108.18629 * 46.72771 * 16 15 14 18 18 C 1.36940 * 121.35711 * 118.47310 * 17 16 15 19 19 H 1.08003 * 119.99354 * 338.84443 * 18 17 16 20 20 C 1.38805 * 120.00352 * 159.10975 * 18 17 16 21 21 N 1.31620 * 120.00313 * 342.28188 * 20 18 17 22 22 Si 1.86804 * 120.00004 * 162.27304 * 20 18 17 23 23 H 1.48496 * 109.46917 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47108 * 120.00527 * 22 20 18 25 25 H 1.48500 * 109.47454 * 240.00654 * 22 20 18 26 26 C 1.47052 * 117.29269 * 298.74155 * 17 16 15 27 27 C 1.33386 * 117.70390 * 300.08730 * 14 12 11 28 28 O 1.21278 * 118.48679 * 4.31890 * 27 14 12 29 29 C 1.46934 * 120.60702 * 5.55397 * 8 6 3 30 30 H 1.08997 * 109.46870 * 60.00393 * 1 2 3 31 31 H 1.08996 * 109.46521 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46787 * 300.00122 * 1 2 3 33 33 H 1.08996 * 109.47691 * 239.99979 * 2 1 3 34 34 H 1.09001 * 109.47236 * 119.99938 * 2 1 3 35 35 H 1.09004 * 109.46850 * 293.63620 * 5 3 2 36 36 H 1.09000 * 109.47181 * 53.63606 * 5 3 2 37 37 H 1.08997 * 109.47243 * 173.63826 * 5 3 2 38 38 H 1.09007 * 109.58304 * 6.59963 * 9 8 6 39 39 H 1.09005 * 109.70336 * 246.25003 * 9 8 6 40 40 H 1.09001 * 109.49480 * 294.68143 * 10 9 8 41 41 H 1.09003 * 109.49418 * 174.58887 * 10 9 8 42 42 H 1.09001 * 109.46133 * 178.61449 * 11 10 9 43 43 H 1.08999 * 109.45840 * 58.65315 * 11 10 9 44 44 H 1.09002 * 109.21448 * 37.76532 * 15 14 12 45 45 H 1.09004 * 109.18054 * 278.41394 * 15 14 12 46 46 H 1.08998 * 109.72354 * 287.05133 * 16 15 14 47 47 H 1.09003 * 109.75606 * 166.42151 * 16 15 14 48 48 H 0.96999 * 120.00089 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.56507 * 162.31297 * 26 17 16 50 50 H 1.08999 * 109.57036 * 282.66614 * 26 17 16 51 51 H 1.09004 * 109.56198 * 113.80808 * 29 8 6 52 52 H 1.09005 * 109.61534 * 353.38215 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1665 0.4207 0.0570 8 7 4.1910 2.5837 -0.4354 9 6 5.6399 2.5771 -0.6794 10 6 5.9134 3.2216 -2.0419 11 6 5.2758 4.6122 -2.0812 12 6 3.7611 4.4860 -1.9020 13 1 3.3526 3.8554 -2.6916 14 7 3.1482 5.8149 -1.9712 15 6 2.1611 6.0517 -3.0157 16 6 1.2512 7.2247 -2.6463 17 7 2.0984 8.3323 -2.1727 18 6 2.1243 9.5377 -2.8221 19 1 1.8098 9.6023 -3.8533 20 6 2.5600 10.6753 -2.1567 21 7 2.6149 10.6882 -0.8417 22 14 3.0686 12.1880 -3.1276 23 1 2.9154 11.9186 -4.5798 24 1 2.2073 13.3352 -2.7438 25 1 4.4869 12.5129 -2.8309 26 6 2.9200 8.0893 -0.9776 27 6 3.5335 6.7230 -1.0735 28 8 4.4224 6.4322 -0.3014 29 6 3.4625 3.8556 -0.5381 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5504 2.2266 1.3444 36 1 1.9738 1.5261 2.1516 37 1 2.0930 3.1145 1.3574 38 1 6.0055 1.5502 -0.6809 39 1 6.1466 3.1442 0.1015 40 1 5.4847 2.6023 -2.8299 41 1 6.9893 3.3102 -2.1930 42 1 5.4899 5.0830 -3.0408 43 1 5.6869 5.2230 -1.2775 44 1 1.5553 5.1551 -3.1468 45 1 2.6754 6.2769 -3.9500 46 1 0.5645 6.9228 -1.8556 47 1 0.6860 7.5427 -3.5225 48 1 2.9197 11.4831 -0.3768 49 1 3.7086 8.8394 -0.9181 50 1 2.2941 8.1437 -0.0870 51 1 3.7893 4.5283 0.2549 52 1 2.3919 3.6725 -0.4468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:43 Heat of formation + Delta-G solvation = -62.660847 kcal Electronic energy + Delta-G solvation = -31618.383896 eV Core-core repulsion = 27617.734599 eV Total energy + Delta-G solvation = -4000.649296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03971 -40.98587 -38.39986 -37.67282 -36.51450 -35.96843 -33.92531 -33.29380 -31.25517 -30.52620 -30.32551 -28.14010 -27.08878 -25.65812 -25.27632 -24.56678 -23.42103 -22.56599 -21.25212 -19.93545 -19.76859 -18.61393 -18.21699 -17.79380 -17.39831 -16.91086 -16.49859 -16.35504 -16.25031 -15.71142 -15.46550 -15.38002 -15.20911 -15.03630 -14.75756 -14.58700 -14.23977 -14.02897 -13.82762 -13.68648 -13.53087 -13.29130 -13.18428 -12.98740 -12.80899 -12.72425 -12.60331 -12.57361 -12.48132 -12.23660 -12.14897 -11.95162 -11.91674 -11.84558 -11.70250 -11.61659 -11.54551 -10.71721 -10.66903 -10.54008 -9.94840 -9.41017 -8.86485 -7.92056 -5.32843 1.47589 1.51459 1.53367 1.59987 1.68256 1.79224 2.25232 2.49531 3.26008 3.42626 3.50063 3.64636 3.73650 3.81511 3.94394 3.95810 4.01765 4.08912 4.20342 4.24392 4.29359 4.41465 4.50108 4.53545 4.56356 4.61579 4.66040 4.68685 4.76582 4.77454 4.87255 4.89397 4.93888 4.96340 4.98628 5.00173 5.06927 5.12050 5.20320 5.21194 5.33827 5.35077 5.35201 5.42450 5.51410 5.62831 5.72211 6.24798 6.31948 6.56090 6.99504 7.08065 7.28813 7.74608 8.24236 9.16475 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.003098 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.965824 B = 9036.299580 C = 9777.577145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.107 4.107 4 H 0.114 0.886 5 C -0.146 4.146 6 C 0.516 3.484 7 O -0.581 6.581 8 N -0.603 5.603 9 C 0.108 3.892 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.131 3.869 13 H 0.114 0.886 14 N -0.588 5.588 15 C 0.103 3.897 16 C 0.123 3.877 17 N -0.612 5.612 18 C -0.255 4.255 19 H 0.086 0.914 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.294 1.294 25 H -0.298 1.298 26 C 0.173 3.827 27 C 0.509 3.491 28 O -0.585 6.585 29 C 0.099 3.901 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.250 0.750 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.066 0.934 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -19.022 -3.598 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.128 4.128 4 H 0.132 0.868 5 C -0.203 4.203 6 C 0.306 3.694 7 O -0.461 6.461 8 N -0.336 5.336 9 C -0.014 4.014 10 C -0.153 4.153 11 C -0.176 4.176 12 C 0.027 3.973 13 H 0.132 0.868 14 N -0.319 5.319 15 C -0.020 4.020 16 C -0.002 4.002 17 N -0.337 5.337 18 C -0.384 4.384 19 H 0.104 0.896 20 C -0.249 4.249 21 N -0.586 5.586 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.221 1.221 25 H -0.226 1.226 26 C 0.044 3.956 27 C 0.298 3.702 28 O -0.467 6.467 29 C -0.025 4.025 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.054 0.946 51 H 0.085 0.915 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.878 -19.532 -3.062 19.979 hybrid contribution 0.685 1.527 0.092 1.675 sum -2.193 -18.006 -2.970 18.381 Atomic orbital electron populations 1.21808 0.93462 1.02536 1.02808 1.21307 0.96994 0.93348 1.02162 1.21429 0.89555 1.00101 1.01736 0.86838 1.21900 1.03654 0.99804 0.94989 1.21293 0.91409 0.81914 0.74746 1.90639 1.70073 1.33401 1.51985 1.48110 1.08854 1.07833 1.68770 1.21630 0.80267 1.02044 0.97498 1.21781 1.02040 0.95011 0.96443 1.21948 0.95092 0.98018 1.02497 1.21529 0.94175 0.83543 0.98014 0.86789 1.47327 1.41858 1.11257 1.31494 1.22141 0.90292 1.00318 0.89282 1.21519 0.92089 0.87057 0.99535 1.44407 1.47241 1.11409 1.30640 1.19610 1.39417 0.84886 0.94518 0.89610 1.25708 1.02727 1.00425 0.96054 1.70135 1.51737 1.29414 1.07319 0.85235 0.76889 0.79514 0.78990 1.18503 1.22071 1.22550 1.20534 0.94955 0.89946 0.90135 1.21242 0.81876 0.87694 0.79395 1.90533 1.31975 1.80036 1.44112 1.22197 0.97847 0.84166 0.98257 0.91644 0.91944 0.91734 0.92414 0.92633 0.88876 0.92645 0.92786 0.89456 0.92316 0.90499 0.89191 0.91992 0.91648 0.86894 0.91861 0.94208 0.89056 0.94057 0.90531 0.94583 0.91539 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.10 16 2 C -0.10 -1.73 4.72 30.60 0.14 -1.58 16 3 C -0.11 -1.94 1.86 -11.54 -0.02 -1.96 16 4 H 0.11 1.62 7.16 -2.39 -0.02 1.61 16 5 C -0.15 -2.50 8.36 71.98 0.60 -1.90 16 6 C 0.52 12.98 6.93 87.66 0.61 13.59 16 7 O -0.58 -18.46 15.52 -3.01 -0.05 -18.51 16 8 N -0.60 -14.75 2.97 -818.86 -2.43 -17.19 16 9 C 0.11 2.60 6.42 86.36 0.55 3.16 16 10 C -0.11 -2.38 6.08 30.67 0.19 -2.20 16 11 C -0.14 -3.62 5.03 30.62 0.15 -3.46 16 12 C 0.13 3.20 2.61 45.07 0.12 3.32 16 13 H 0.11 2.12 7.73 -2.39 -0.02 2.10 16 14 N -0.59 -17.51 2.79 -802.43 -2.24 -19.74 16 15 C 0.10 2.55 6.45 86.53 0.56 3.11 16 16 C 0.12 3.93 6.61 86.23 0.57 4.50 16 17 N -0.61 -27.45 3.03 -704.14 -2.14 -29.58 16 18 C -0.25 -12.73 9.72 84.03 0.82 -11.91 16 19 H 0.09 4.03 7.89 -2.91 -0.02 4.00 16 20 C -0.05 -2.87 4.98 84.86 0.42 -2.45 16 21 N -0.94 -53.61 11.01 21.65 0.24 -53.37 16 22 Si 0.96 42.99 29.59 68.60 2.03 45.02 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 26 C 0.17 8.18 5.16 85.33 0.44 8.62 16 27 C 0.51 20.21 6.95 87.68 0.61 20.82 16 28 O -0.59 -25.33 12.49 -3.02 -0.04 -25.37 16 29 C 0.10 2.43 4.49 86.36 0.39 2.82 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.71 6.71 -2.39 -0.02 0.69 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.09 1.19 6.89 -2.38 -0.02 1.18 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.05 6.15 -2.39 -0.01 1.04 16 38 H 0.09 2.16 7.04 -2.38 -0.02 2.14 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 2.22 5.79 -2.39 -0.01 2.21 16 44 H 0.11 1.77 7.94 -2.39 -0.02 1.75 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 2.65 7.96 -2.39 -0.02 2.63 16 48 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 49 H 0.08 4.26 6.28 -2.39 -0.01 4.25 16 50 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.07 2.12 5.97 -2.38 -0.01 2.11 16 52 H 0.11 2.14 4.78 -2.38 -0.01 2.13 16 Total: -1.00 -67.68 389.02 3.12 -64.55 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.90 Total: 20.81 kcal Atomic # 6 Polarization: 26.54 SS G_CDS: 6.84 Total: 33.38 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.57 Total: -119.89 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.08 Total: -43.88 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.68 3.12 -64.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.894 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds