Wall clock time and date at job start Tue Mar 31 2020 20:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 H 1.08995 * 109.47492 * 54.99902 * 3 2 1 5 5 C 1.53003 * 109.46998 * 294.99832 * 3 2 1 6 6 C 1.50703 * 109.47271 * 174.99747 * 3 2 1 7 7 O 1.21280 * 119.99945 * 21.81808 * 6 3 2 8 8 N 1.34775 * 119.99877 * 202.08945 * 6 3 2 9 9 C 1.46924 * 120.63501 * 4.56448 * 8 6 3 10 10 C 1.52752 * 109.01023 * 233.58213 * 9 8 6 11 11 C 1.53041 * 109.38366 * 305.58593 * 10 9 8 12 12 C 1.53041 * 109.53720 * 61.24194 * 11 10 9 13 13 H 1.08996 * 109.49881 * 58.58287 * 12 11 10 14 14 N 1.46505 * 109.49936 * 178.68629 * 12 11 10 15 15 C 1.45649 * 117.70348 * 239.57653 * 14 12 11 16 16 C 1.53175 * 110.66428 * 157.95377 * 15 14 12 17 17 N 1.47265 * 108.06917 * 47.05691 * 16 15 14 18 18 C 1.36938 * 121.35356 * 118.36081 * 17 16 15 19 19 H 1.07996 * 120.00251 * 338.49402 * 18 17 16 20 20 C 1.38814 * 119.99889 * 158.49494 * 18 17 16 21 21 N 1.31617 * 120.00231 * 343.98371 * 20 18 17 22 22 Si 1.86799 * 119.99963 * 163.98562 * 20 18 17 23 23 H 1.48501 * 109.47176 * 59.99915 * 22 20 18 24 24 H 1.48494 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47291 * 300.00344 * 22 20 18 26 26 C 1.47044 * 117.29395 * 298.33872 * 17 16 15 27 27 C 1.33374 * 117.70391 * 59.83100 * 14 12 11 28 28 O 1.21279 * 118.49400 * 4.32455 * 27 14 12 29 29 C 1.46924 * 120.62880 * 184.83949 * 8 6 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47588 * 300.00613 * 1 2 3 32 32 H 1.09003 * 109.47055 * 60.00043 * 1 2 3 33 33 H 1.09006 * 109.47104 * 239.99745 * 2 1 3 34 34 H 1.09003 * 109.47055 * 119.99957 * 2 1 3 35 35 H 1.08995 * 109.47397 * 65.69839 * 5 3 2 36 36 H 1.09006 * 109.47132 * 185.69205 * 5 3 2 37 37 H 1.08999 * 109.47073 * 305.69121 * 5 3 2 38 38 H 1.09000 * 109.58239 * 353.41719 * 9 8 6 39 39 H 1.08997 * 109.58885 * 113.83958 * 9 8 6 40 40 H 1.08997 * 109.56552 * 185.54876 * 10 9 8 41 41 H 1.09008 * 109.36379 * 65.49851 * 10 9 8 42 42 H 1.08997 * 109.46170 * 301.22142 * 11 10 9 43 43 H 1.08997 * 109.46033 * 181.25979 * 11 10 9 44 44 H 1.09005 * 109.21093 * 278.44762 * 15 14 12 45 45 H 1.09001 * 109.21631 * 37.78197 * 15 14 12 46 46 H 1.08997 * 109.90897 * 287.34241 * 16 15 14 47 47 H 1.09005 * 109.68492 * 166.63699 * 16 15 14 48 48 H 0.96997 * 120.00353 * 179.97438 * 21 20 18 49 49 H 1.09011 * 109.56620 * 282.91533 * 26 17 16 50 50 H 1.08995 * 109.66920 * 162.62070 * 26 17 16 51 51 H 1.08996 * 109.59061 * 246.16196 * 29 8 6 52 52 H 1.09001 * 109.58905 * 6.44529 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1772 0.4590 -0.1868 8 7 4.1787 2.5389 0.5851 9 6 3.4182 3.7010 1.0646 10 6 3.9019 4.9498 0.3298 11 6 5.4180 5.0797 0.4926 12 6 6.1053 3.8585 -0.1227 13 1 5.8383 3.7833 -1.1768 14 7 7.5580 3.9986 0.0057 15 6 8.3484 4.0051 -1.2177 16 6 9.7019 4.6828 -0.9832 17 7 10.2780 4.1355 0.2566 18 6 11.4670 3.4561 0.2506 19 1 11.8292 3.0097 -0.6637 20 6 12.2067 3.3413 1.4196 21 7 11.9479 4.1285 2.4421 22 14 13.5694 2.0695 1.5414 23 1 14.5898 2.3356 0.4958 24 1 14.2027 2.1494 2.8821 25 1 12.9995 0.7127 1.3427 26 6 9.5250 4.3486 1.5015 27 6 8.0644 4.1059 1.2349 28 8 7.3130 4.0027 2.1812 29 6 5.6466 2.5951 0.6124 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5498 2.2158 -1.3499 36 1 2.0834 3.1191 -1.3520 37 1 1.9843 1.5319 -2.1517 38 1 2.3570 3.5502 0.8666 39 1 3.5781 3.8257 2.1356 40 1 3.4143 5.8307 0.7472 41 1 3.6556 4.8644 -0.7287 42 1 5.6656 5.1402 1.5523 43 1 5.7615 5.9825 -0.0125 44 1 8.5095 2.9783 -1.5461 45 1 7.8063 4.5478 -1.9921 46 1 9.5653 5.7594 -0.8814 47 1 10.3671 4.4742 -1.8212 48 1 12.4645 4.0480 3.2591 49 1 9.6682 5.3736 1.8439 50 1 9.8765 3.6559 2.2661 51 1 5.9920 2.6278 1.6456 52 1 6.0553 1.7137 0.1182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:47 Heat of formation + Delta-G solvation = -45.075970 kcal Electronic energy + Delta-G solvation = -31314.698709 eV Core-core repulsion = 27314.811950 eV Total energy + Delta-G solvation = -3999.886759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.76158 -39.67696 -37.22176 -36.00886 -35.62911 -34.54904 -32.53081 -31.63844 -30.38979 -29.44589 -28.80279 -26.43680 -26.05719 -24.84464 -23.64751 -23.27487 -22.05419 -21.57904 -20.32198 -18.67025 -18.15198 -17.48534 -16.75685 -16.40534 -15.97211 -15.54089 -15.44147 -15.14304 -14.68065 -14.61545 -14.29700 -14.01678 -13.80573 -13.70864 -13.42597 -13.38051 -13.18122 -12.96421 -12.65466 -12.56140 -12.41409 -12.35836 -11.97860 -11.83808 -11.70610 -11.48613 -11.44247 -11.20466 -11.01475 -10.96564 -10.86180 -10.81566 -10.63934 -10.61025 -10.43434 -10.22652 -9.98590 -9.64792 -9.01177 -8.68205 -8.63836 -8.07295 -6.96839 -5.91451 -3.32477 2.60730 2.87862 3.34361 3.37909 3.41803 3.42447 3.60562 4.30064 4.39114 4.49145 4.66394 4.70094 4.84920 4.86229 4.98424 5.05806 5.10174 5.18376 5.20403 5.27375 5.29068 5.34342 5.39347 5.46718 5.51803 5.58590 5.60821 5.66111 5.69515 5.72235 5.77904 5.82818 5.87219 5.91875 6.00452 6.05176 6.09209 6.12881 6.28431 6.34632 6.44489 6.46460 6.58346 6.89427 7.08834 7.24813 7.42113 7.64912 8.09963 8.17944 8.18462 8.80731 9.05782 9.64643 10.17133 11.18358 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.002844 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.443608 B = 9842.472932 C =10430.864596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.092 0.908 5 C -0.142 4.142 6 C 0.516 3.484 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.104 3.896 10 C -0.128 4.128 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.078 0.922 14 N -0.597 5.597 15 C 0.100 3.900 16 C 0.130 3.870 17 N -0.595 5.595 18 C -0.257 4.257 19 H 0.075 0.925 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.910 3.090 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.165 3.835 27 C 0.505 3.495 28 O -0.569 6.569 29 C 0.093 3.907 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.120 0.880 51 H 0.102 0.898 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 1.009 -6.896 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.200 4.200 6 C 0.304 3.696 7 O -0.419 6.419 8 N -0.339 5.339 9 C -0.019 4.019 10 C -0.167 4.167 11 C -0.175 4.175 12 C 0.029 3.971 13 H 0.096 0.904 14 N -0.330 5.330 15 C -0.025 4.025 16 C 0.003 3.997 17 N -0.320 5.320 18 C -0.385 4.385 19 H 0.092 0.908 20 C -0.196 4.196 21 N -0.552 5.552 22 Si 0.739 3.261 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.037 3.963 27 C 0.295 3.705 28 O -0.449 6.449 29 C -0.030 4.030 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.138 0.862 51 H 0.120 0.880 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.900 0.429 -6.400 22.820 hybrid contribution 0.790 -0.446 0.012 0.907 sum -21.110 -0.017 -6.388 22.056 Atomic orbital electron populations 1.21827 0.95458 1.01867 1.01800 1.21372 0.95369 0.94262 1.03479 1.21374 0.92115 0.99226 1.00530 0.88986 1.21788 1.01901 1.00466 0.95800 1.20690 0.90113 0.82369 0.76471 1.90692 1.68384 1.32931 1.49849 1.48107 1.07110 1.15785 1.62911 1.21741 0.95707 0.85278 0.99151 1.21797 0.96625 0.97540 1.00726 1.21959 0.93822 0.97397 1.04362 1.21301 0.81654 0.94928 0.99236 0.90428 1.47407 1.05541 1.72872 1.07153 1.22107 0.93966 1.01191 0.85195 1.21274 0.91591 0.95350 0.91496 1.44186 1.22465 1.63817 1.01495 1.19151 0.96315 1.26493 0.96566 0.90751 1.25006 0.98320 0.98842 0.97457 1.69934 1.42700 1.37461 1.05141 0.86255 0.81341 0.81524 0.76994 1.20789 1.21475 1.20864 1.21063 0.81648 1.02464 0.91148 1.22135 0.93415 0.73689 0.81223 1.90495 1.60203 1.52095 1.42091 1.22214 0.78326 0.98127 1.04313 0.92498 0.92760 0.92441 0.90920 0.91606 0.91260 0.92112 0.91890 0.89704 0.90924 0.90428 0.91821 0.88925 0.91847 0.92354 0.92075 0.94968 0.90577 0.93094 0.92096 0.86226 0.88022 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.11 -1.01 4.81 -26.74 -0.13 -1.14 16 3 C -0.11 -1.05 1.86 -91.77 -0.17 -1.22 16 4 H 0.09 0.70 6.45 -51.93 -0.33 0.37 16 5 C -0.14 -1.08 8.57 37.16 0.32 -0.76 16 6 C 0.52 7.12 6.83 -10.98 -0.08 7.05 16 7 O -0.54 -9.75 15.59 5.56 0.09 -9.66 16 8 N -0.61 -8.11 2.98 -173.04 -0.52 -8.63 16 9 C 0.10 1.04 5.96 -3.94 -0.02 1.01 16 10 C -0.13 -1.23 6.06 -26.84 -0.16 -1.39 16 11 C -0.14 -1.82 5.03 -26.69 -0.13 -1.95 16 12 C 0.13 2.02 2.61 -67.81 -0.18 1.84 16 13 H 0.08 1.07 7.73 -51.93 -0.40 0.67 16 14 N -0.60 -10.60 2.79 -167.04 -0.47 -11.07 16 15 C 0.10 1.62 6.46 -4.41 -0.03 1.60 16 16 C 0.13 2.43 6.61 -3.53 -0.02 2.40 16 17 N -0.60 -14.20 3.03 -173.59 -0.53 -14.72 16 18 C -0.26 -6.72 9.73 -15.06 -0.15 -6.86 16 19 H 0.07 1.88 7.88 -52.49 -0.41 1.46 16 20 C 0.00 0.06 5.02 -17.43 -0.09 -0.03 16 21 N -0.91 -25.64 10.93 55.49 0.61 -25.03 16 22 Si 0.91 21.36 29.58 -169.99 -5.03 16.33 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.16 3.96 5.17 -5.02 -0.03 3.94 16 27 C 0.50 10.70 6.98 -11.73 -0.08 10.62 16 28 O -0.57 -12.65 12.47 5.56 0.07 -12.58 16 29 C 0.09 1.54 5.65 -3.71 -0.02 1.51 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 6.69 -51.93 -0.35 -0.01 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.39 6.85 -51.93 -0.36 0.03 16 36 H 0.06 0.44 7.60 -51.93 -0.39 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.61 5.13 -51.93 -0.27 0.34 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.09 1.49 6.09 -51.93 -0.32 1.18 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.33 7.96 -51.93 -0.41 0.91 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.06 1.54 8.14 -51.92 -0.42 1.12 16 50 H 0.12 3.27 6.25 -51.93 -0.32 2.95 16 51 H 0.10 1.97 5.66 -51.93 -0.29 1.68 16 52 H 0.09 1.60 7.04 -51.93 -0.37 1.24 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -31.45 390.89 -9.33 -40.79 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.84 Total: 2.72 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -0.61 Total: 15.96 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.90 Total: -59.45 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.16 Total: -22.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.45 -9.33 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.290 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds