Wall clock time and date at job start Tue Mar 31 2020 20:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 H 1.08995 * 109.47492 * 54.99902 * 3 2 1 5 5 C 1.53003 * 109.46998 * 294.99832 * 3 2 1 6 6 C 1.50703 * 109.47271 * 174.99747 * 3 2 1 7 7 O 1.21280 * 119.99945 * 21.81808 * 6 3 2 8 8 N 1.34775 * 119.99877 * 202.08945 * 6 3 2 9 9 C 1.46924 * 120.63501 * 4.56448 * 8 6 3 10 10 C 1.52752 * 109.01023 * 233.58213 * 9 8 6 11 11 C 1.53041 * 109.38366 * 305.58593 * 10 9 8 12 12 C 1.53041 * 109.53720 * 61.24194 * 11 10 9 13 13 H 1.08996 * 109.49881 * 58.58287 * 12 11 10 14 14 N 1.46505 * 109.49936 * 178.68629 * 12 11 10 15 15 C 1.45649 * 117.70348 * 239.57653 * 14 12 11 16 16 C 1.53175 * 110.66428 * 157.95377 * 15 14 12 17 17 N 1.47265 * 108.06917 * 47.05691 * 16 15 14 18 18 C 1.36938 * 121.35356 * 118.36081 * 17 16 15 19 19 H 1.07996 * 120.00251 * 338.49402 * 18 17 16 20 20 C 1.38814 * 119.99889 * 158.49494 * 18 17 16 21 21 N 1.31617 * 120.00231 * 343.98371 * 20 18 17 22 22 Si 1.86799 * 119.99963 * 163.98562 * 20 18 17 23 23 H 1.48501 * 109.47176 * 59.99915 * 22 20 18 24 24 H 1.48494 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47291 * 300.00344 * 22 20 18 26 26 C 1.47044 * 117.29395 * 298.33872 * 17 16 15 27 27 C 1.33374 * 117.70391 * 59.83100 * 14 12 11 28 28 O 1.21279 * 118.49400 * 4.32455 * 27 14 12 29 29 C 1.46924 * 120.62880 * 184.83949 * 8 6 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47588 * 300.00613 * 1 2 3 32 32 H 1.09003 * 109.47055 * 60.00043 * 1 2 3 33 33 H 1.09006 * 109.47104 * 239.99745 * 2 1 3 34 34 H 1.09003 * 109.47055 * 119.99957 * 2 1 3 35 35 H 1.08995 * 109.47397 * 65.69839 * 5 3 2 36 36 H 1.09006 * 109.47132 * 185.69205 * 5 3 2 37 37 H 1.08999 * 109.47073 * 305.69121 * 5 3 2 38 38 H 1.09000 * 109.58239 * 353.41719 * 9 8 6 39 39 H 1.08997 * 109.58885 * 113.83958 * 9 8 6 40 40 H 1.08997 * 109.56552 * 185.54876 * 10 9 8 41 41 H 1.09008 * 109.36379 * 65.49851 * 10 9 8 42 42 H 1.08997 * 109.46170 * 301.22142 * 11 10 9 43 43 H 1.08997 * 109.46033 * 181.25979 * 11 10 9 44 44 H 1.09005 * 109.21093 * 278.44762 * 15 14 12 45 45 H 1.09001 * 109.21631 * 37.78197 * 15 14 12 46 46 H 1.08997 * 109.90897 * 287.34241 * 16 15 14 47 47 H 1.09005 * 109.68492 * 166.63699 * 16 15 14 48 48 H 0.96997 * 120.00353 * 179.97438 * 21 20 18 49 49 H 1.09011 * 109.56620 * 282.91533 * 26 17 16 50 50 H 1.08995 * 109.66920 * 162.62070 * 26 17 16 51 51 H 1.08996 * 109.59061 * 246.16196 * 29 8 6 52 52 H 1.09001 * 109.58905 * 6.44529 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1772 0.4590 -0.1868 8 7 4.1787 2.5389 0.5851 9 6 3.4182 3.7010 1.0646 10 6 3.9019 4.9498 0.3298 11 6 5.4180 5.0797 0.4926 12 6 6.1053 3.8585 -0.1227 13 1 5.8383 3.7833 -1.1768 14 7 7.5580 3.9986 0.0057 15 6 8.3484 4.0051 -1.2177 16 6 9.7019 4.6828 -0.9832 17 7 10.2780 4.1355 0.2566 18 6 11.4670 3.4561 0.2506 19 1 11.8292 3.0097 -0.6637 20 6 12.2067 3.3413 1.4196 21 7 11.9479 4.1285 2.4421 22 14 13.5694 2.0695 1.5414 23 1 14.5898 2.3356 0.4958 24 1 14.2027 2.1494 2.8821 25 1 12.9995 0.7127 1.3427 26 6 9.5250 4.3486 1.5015 27 6 8.0644 4.1059 1.2349 28 8 7.3130 4.0027 2.1812 29 6 5.6466 2.5951 0.6124 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5498 2.2158 -1.3499 36 1 2.0834 3.1191 -1.3520 37 1 1.9843 1.5319 -2.1517 38 1 2.3570 3.5502 0.8666 39 1 3.5781 3.8257 2.1356 40 1 3.4143 5.8307 0.7472 41 1 3.6556 4.8644 -0.7287 42 1 5.6656 5.1402 1.5523 43 1 5.7615 5.9825 -0.0125 44 1 8.5095 2.9783 -1.5461 45 1 7.8063 4.5478 -1.9921 46 1 9.5653 5.7594 -0.8814 47 1 10.3671 4.4742 -1.8212 48 1 12.4645 4.0480 3.2591 49 1 9.6682 5.3736 1.8439 50 1 9.8765 3.6559 2.2661 51 1 5.9920 2.6278 1.6456 52 1 6.0553 1.7137 0.1182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:46 Heat of formation + Delta-G solvation = -64.512310 kcal Electronic energy + Delta-G solvation = -31315.541532 eV Core-core repulsion = 27314.811950 eV Total energy + Delta-G solvation = -4000.729582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03687 -40.99919 -38.41914 -37.72507 -36.48628 -36.07669 -33.89887 -33.07516 -31.53368 -30.58819 -30.27469 -28.19941 -26.99385 -25.68085 -25.32110 -24.55963 -23.35120 -22.66327 -21.40165 -19.89643 -19.62337 -18.74721 -18.26055 -17.89515 -17.24020 -16.98224 -16.49237 -16.43056 -16.37439 -15.65520 -15.56112 -15.24566 -15.17868 -14.98967 -14.87157 -14.56841 -14.27005 -14.15543 -13.85644 -13.78757 -13.45142 -13.28060 -13.21664 -12.99000 -12.81742 -12.71152 -12.60354 -12.54273 -12.43427 -12.35570 -12.20797 -11.98605 -11.86154 -11.81324 -11.74807 -11.62525 -11.53852 -10.77323 -10.68912 -10.56219 -9.96257 -9.43002 -8.91398 -7.95489 -5.38188 1.45082 1.49219 1.53904 1.55082 1.63270 1.79782 2.25060 2.46044 3.22269 3.42094 3.45541 3.63305 3.78184 3.84084 3.92449 3.99147 4.01050 4.08492 4.15154 4.19983 4.30584 4.45329 4.48786 4.52068 4.54175 4.60004 4.65248 4.71718 4.74435 4.77610 4.88736 4.90080 4.92299 4.97222 5.01144 5.05913 5.10182 5.15522 5.17733 5.20227 5.26305 5.29170 5.37254 5.44150 5.49872 5.57386 5.70107 6.20553 6.39100 6.51083 6.94871 7.11605 7.23062 7.69211 8.19504 9.12757 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.002844 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.443608 B = 9842.472932 C =10430.864596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.102 4.102 4 H 0.119 0.881 5 C -0.138 4.138 6 C 0.508 3.492 7 O -0.594 6.594 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.118 4.118 11 C -0.133 4.133 12 C 0.136 3.864 13 H 0.104 0.896 14 N -0.592 5.592 15 C 0.103 3.897 16 C 0.126 3.874 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.085 0.915 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.296 1.296 25 H -0.284 1.284 26 C 0.174 3.826 27 C 0.507 3.493 28 O -0.585 6.585 29 C 0.101 3.899 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.110 0.890 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.252 0.748 49 H 0.039 0.961 50 H 0.079 0.921 51 H 0.066 0.934 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.310 2.163 -9.405 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.123 4.123 4 H 0.137 0.863 5 C -0.196 4.196 6 C 0.298 3.702 7 O -0.475 6.475 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.157 4.157 11 C -0.171 4.171 12 C 0.032 3.968 13 H 0.122 0.878 14 N -0.323 5.323 15 C -0.021 4.021 16 C 0.001 3.999 17 N -0.338 5.338 18 C -0.389 4.389 19 H 0.102 0.898 20 C -0.249 4.249 21 N -0.587 5.587 22 Si 0.798 3.202 23 H -0.193 1.193 24 H -0.223 1.223 25 H -0.210 1.210 26 C 0.046 3.954 27 C 0.296 3.704 28 O -0.467 6.467 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.097 0.903 51 H 0.084 0.916 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.206 1.613 -8.966 26.802 hybrid contribution 1.780 -0.824 0.761 2.104 sum -23.426 0.789 -8.205 24.834 Atomic orbital electron populations 1.21787 0.92815 1.02488 1.03150 1.21367 0.97541 0.94109 1.01584 1.21455 0.88253 0.99744 1.02873 0.86296 1.21818 1.03783 1.00278 0.93693 1.21645 0.92016 0.81365 0.75171 1.90667 1.69845 1.34859 1.52136 1.48217 1.05751 1.17040 1.62619 1.22058 0.97321 0.84169 0.98796 1.21795 0.93492 0.98197 1.02179 1.21903 0.96673 0.96494 1.02048 1.21499 0.79621 0.95082 1.00574 0.87808 1.47374 1.07297 1.71279 1.06365 1.22152 0.93055 1.01533 0.85335 1.21522 0.92955 0.95842 0.89608 1.44408 1.22136 1.64385 1.02883 1.19556 0.96620 1.26001 0.96740 0.89752 1.25771 1.00944 1.00719 0.97508 1.70104 1.43946 1.39210 1.05447 0.85296 0.79130 0.79079 0.76717 1.19340 1.22271 1.21000 1.20626 0.83900 1.00059 0.90837 1.21412 0.91946 0.74520 0.82524 1.90500 1.60120 1.52957 1.43089 1.21797 0.80881 0.97753 1.01883 0.92415 0.91455 0.90897 0.92875 0.93685 0.88362 0.91050 0.93315 0.85827 0.91771 0.87592 0.89705 0.92240 0.90896 0.92589 0.87165 0.94099 0.89009 0.93888 0.94380 0.90312 0.91633 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 71.98 0.70 -0.84 16 2 C -0.11 -1.91 4.81 30.59 0.15 -1.76 16 3 C -0.10 -1.66 1.86 -11.54 -0.02 -1.68 16 4 H 0.12 1.30 6.45 -2.39 -0.02 1.28 16 5 C -0.14 -1.54 8.57 71.98 0.62 -0.92 16 6 C 0.51 13.66 6.83 87.66 0.60 14.26 16 7 O -0.59 -22.14 15.59 -3.03 -0.05 -22.19 16 8 N -0.60 -15.51 2.98 -819.76 -2.44 -17.96 16 9 C 0.10 1.64 5.96 86.22 0.51 2.16 16 10 C -0.12 -1.76 6.06 30.53 0.19 -1.57 16 11 C -0.13 -3.23 5.03 30.62 0.15 -3.08 16 12 C 0.14 3.91 2.61 45.07 0.12 4.02 16 13 H 0.10 2.49 7.73 -2.39 -0.02 2.48 16 14 N -0.59 -20.68 2.79 -801.56 -2.23 -22.91 16 15 C 0.10 3.10 6.46 86.60 0.56 3.66 16 16 C 0.13 4.54 6.61 86.29 0.57 5.11 16 17 N -0.61 -29.78 3.03 -703.11 -2.13 -31.91 16 18 C -0.26 -13.80 9.73 84.03 0.82 -12.99 16 19 H 0.08 4.22 7.88 -2.91 -0.02 4.20 16 20 C -0.05 -3.02 5.02 84.86 0.43 -2.60 16 21 N -0.94 -55.71 10.93 21.65 0.24 -55.47 16 22 Si 0.97 45.02 29.58 68.60 2.03 47.05 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 C 0.17 8.86 5.17 85.45 0.44 9.30 16 27 C 0.51 22.27 6.98 87.79 0.61 22.88 16 28 O -0.59 -27.38 12.47 -3.03 -0.04 -27.42 16 29 C 0.10 3.41 5.65 86.36 0.49 3.90 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.56 6.69 -2.39 -0.02 0.55 16 33 H 0.05 1.13 8.05 -2.38 -0.02 1.11 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.57 6.85 -2.39 -0.02 0.56 16 36 H 0.07 0.67 7.60 -2.38 -0.02 0.65 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.12 1.14 5.13 -2.39 -0.01 1.13 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 1.89 6.09 -2.39 -0.01 1.87 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.11 2.34 7.94 -2.39 -0.02 2.32 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.09 3.01 7.96 -2.38 -0.02 2.99 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.08 4.64 6.25 -2.39 -0.01 4.62 16 51 H 0.07 2.70 5.66 -2.39 -0.01 2.68 16 52 H 0.05 2.16 7.04 -2.39 -0.02 2.15 16 Total: -1.00 -75.60 390.89 3.20 -72.40 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.90 Total: 18.55 kcal Atomic # 6 Polarization: 32.93 SS G_CDS: 6.92 Total: 39.85 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.57 Total: -128.25 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.08 Total: -49.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.60 3.20 -72.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.885 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds