Wall clock time and date at job start Tue Mar 31 2020 20:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 H 1.08995 * 109.47819 * 305.00496 * 3 2 1 5 5 C 1.53004 * 109.46932 * 65.00768 * 3 2 1 6 6 C 1.50698 * 109.47000 * 185.00278 * 3 2 1 7 7 O 1.21281 * 120.00041 * 345.55161 * 6 3 2 8 8 N 1.34776 * 120.00158 * 165.55313 * 6 3 2 9 9 C 1.46925 * 120.63084 * 5.57728 * 8 6 3 10 10 C 1.53187 * 108.77610 * 233.63474 * 9 8 6 11 11 C 1.53044 * 109.31456 * 305.36206 * 10 9 8 12 12 C 1.53035 * 109.53608 * 61.36504 * 11 10 9 13 13 H 1.09003 * 109.52277 * 58.60745 * 12 11 10 14 14 N 1.46499 * 109.50041 * 178.68530 * 12 11 10 15 15 C 1.45646 * 117.70726 * 239.82173 * 14 12 11 16 16 C 1.52986 * 110.77443 * 158.12159 * 15 14 12 17 17 N 1.47512 * 108.23750 * 46.75445 * 16 15 14 18 18 C 1.36935 * 121.51561 * 118.48047 * 17 16 15 19 19 H 1.08006 * 119.99612 * 338.06432 * 18 17 16 20 20 C 1.38807 * 120.00277 * 158.06465 * 18 17 16 21 21 N 1.31612 * 119.99984 * 342.49720 * 20 18 17 22 22 Si 1.86806 * 120.00115 * 162.49996 * 20 18 17 23 23 H 1.48499 * 109.47266 * 89.99792 * 22 20 18 24 24 H 1.48496 * 109.47143 * 210.00204 * 22 20 18 25 25 H 1.48506 * 109.46773 * 329.99774 * 22 20 18 26 26 C 1.47053 * 117.13356 * 298.53326 * 17 16 15 27 27 C 1.33383 * 117.70142 * 59.83536 * 14 12 11 28 28 O 1.21279 * 118.49105 * 4.27875 * 27 14 12 29 29 C 1.46932 * 120.63392 * 185.60457 * 8 6 3 30 30 H 1.08997 * 109.47307 * 59.99543 * 1 2 3 31 31 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46894 * 299.99643 * 1 2 3 33 33 H 1.09000 * 109.46585 * 240.00557 * 2 1 3 34 34 H 1.09000 * 109.46949 * 120.00840 * 2 1 3 35 35 H 1.08993 * 109.46946 * 173.67429 * 5 3 2 36 36 H 1.09006 * 109.46798 * 293.67226 * 5 3 2 37 37 H 1.08993 * 109.47292 * 53.66994 * 5 3 2 38 38 H 1.09006 * 109.58315 * 353.41775 * 9 8 6 39 39 H 1.09000 * 109.58649 * 113.84426 * 9 8 6 40 40 H 1.09001 * 109.50049 * 65.31889 * 10 9 8 41 41 H 1.09005 * 109.49925 * 185.41227 * 10 9 8 42 42 H 1.09002 * 109.45668 * 301.34964 * 11 10 9 43 43 H 1.08995 * 109.45994 * 181.38814 * 11 10 9 44 44 H 1.09000 * 109.21689 * 278.45312 * 15 14 12 45 45 H 1.09001 * 109.21391 * 37.78361 * 15 14 12 46 46 H 1.08999 * 109.72400 * 166.39836 * 16 15 14 47 47 H 1.09010 * 109.71691 * 287.00759 * 16 15 14 48 48 H 0.97002 * 120.00184 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.56546 * 282.82442 * 26 17 16 50 50 H 1.09001 * 109.56838 * 162.59474 * 26 17 16 51 51 H 1.09003 * 109.58077 * 6.57835 * 29 8 6 52 52 H 1.08998 * 109.58068 * 246.15863 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5419 1.4442 -0.1239 7 8 4.1665 0.4206 0.0577 8 7 4.1910 2.5832 -0.4365 9 6 3.4632 3.8554 -0.5398 10 6 3.7605 4.4841 -1.9047 11 6 5.2751 4.6102 -2.0848 12 6 5.9127 3.2196 -2.0444 13 1 5.4841 2.5993 -2.8317 14 7 7.3586 3.3384 -2.2482 15 6 7.9399 2.6505 -3.3929 16 6 9.2800 3.2787 -3.7802 17 7 10.0763 3.4615 -2.5520 18 6 11.2804 2.8325 -2.3793 19 1 11.5103 1.9418 -2.9452 20 6 12.2052 3.3397 -1.4770 21 7 12.0946 4.5789 -1.0478 22 14 13.6069 2.2632 -0.8718 23 1 14.7752 2.4175 -1.7754 24 1 13.9874 2.6730 0.5038 25 1 13.1722 0.8432 -0.8629 26 6 9.5212 4.3483 -1.5186 27 6 8.0502 4.0688 -1.3724 28 8 7.4664 4.5291 -0.4142 29 6 5.6398 2.5764 -0.6811 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 2.0927 3.1145 1.3572 36 1 0.5505 2.2258 1.3449 37 1 1.9746 1.5262 2.1516 38 1 2.3926 3.6724 -0.4473 39 1 3.7907 4.5291 0.2520 40 1 3.3516 3.8523 -2.6932 41 1 3.3044 5.4728 -1.9570 42 1 5.6866 5.2218 -1.2819 43 1 5.4887 5.0799 -3.0449 44 1 8.0950 1.6016 -3.1402 45 1 7.2545 2.7177 -4.2378 46 1 9.8107 2.6190 -4.4667 47 1 9.1096 4.2445 -4.2561 48 1 12.7412 4.9334 -0.4175 49 1 9.6680 5.3876 -1.8122 50 1 10.0242 4.1626 -0.5696 51 1 6.0053 1.5495 -0.6818 52 1 6.1447 3.1457 0.0992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:51 Heat of formation + Delta-G solvation = -44.995173 kcal Electronic energy + Delta-G solvation = -31286.574878 eV Core-core repulsion = 27286.691623 eV Total energy + Delta-G solvation = -3999.883255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.76791 -39.68957 -37.20909 -36.00568 -35.64907 -34.54818 -32.54776 -31.63000 -30.44133 -29.37612 -28.80150 -26.39187 -26.14607 -24.80028 -23.65043 -23.27453 -22.08172 -21.56426 -20.22593 -18.88925 -18.13761 -17.34830 -16.78764 -16.39657 -15.99200 -15.75928 -15.22999 -15.09872 -14.66353 -14.59098 -14.40878 -13.93794 -13.85708 -13.70677 -13.48174 -13.33771 -13.19498 -12.94592 -12.75281 -12.50849 -12.36628 -12.35909 -11.95258 -11.88523 -11.68003 -11.47041 -11.44201 -11.14204 -11.02273 -10.99680 -10.89195 -10.84935 -10.62889 -10.60712 -10.44157 -10.23352 -9.98025 -9.65818 -9.01886 -8.68446 -8.63485 -8.07840 -6.96540 -5.92379 -3.32400 2.61065 2.87226 3.33373 3.36805 3.42022 3.43852 3.60091 4.29838 4.38934 4.49052 4.65844 4.71912 4.83635 4.85091 4.98891 5.05392 5.10161 5.17616 5.20214 5.28526 5.30143 5.32095 5.36263 5.47838 5.51479 5.58052 5.61133 5.65858 5.70735 5.73526 5.78687 5.80929 5.87252 5.91574 5.99475 6.04947 6.09392 6.12957 6.27757 6.34083 6.44373 6.46305 6.57980 6.88079 7.07891 7.22145 7.41837 7.65552 8.08768 8.17193 8.18024 8.79783 9.04953 9.64243 10.17526 11.17789 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002831 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.840091 B = 9888.290376 C =10392.667916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.110 4.110 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.515 3.485 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.078 0.922 14 N -0.597 5.597 15 C 0.101 3.899 16 C 0.129 3.871 17 N -0.595 5.595 18 C -0.257 4.257 19 H 0.075 0.925 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.165 3.835 27 C 0.505 3.495 28 O -0.569 6.569 29 C 0.093 3.907 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.258 0.742 49 H 0.062 0.938 50 H 0.117 0.883 51 H 0.085 0.915 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.957 -1.767 -2.207 23.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.206 4.206 6 C 0.303 3.697 7 O -0.418 6.418 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.168 4.168 11 C -0.176 4.176 12 C 0.029 3.971 13 H 0.096 0.904 14 N -0.330 5.330 15 C -0.024 4.024 16 C 0.002 3.998 17 N -0.319 5.319 18 C -0.385 4.385 19 H 0.092 0.908 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.204 1.204 26 C 0.037 3.963 27 C 0.296 3.704 28 O -0.449 6.449 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.135 0.865 51 H 0.104 0.896 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.710 -2.001 -1.502 22.847 hybrid contribution 0.798 -0.405 0.091 0.899 sum -21.912 -2.407 -1.410 22.089 Atomic orbital electron populations 1.21831 0.95498 1.01851 1.01790 1.21354 0.95277 0.94222 1.03495 1.21347 0.92070 0.99253 1.00436 0.88912 1.21905 1.02010 1.00722 0.95924 1.20699 0.89983 0.82798 0.76184 1.90694 1.68968 1.32289 1.49893 1.48099 1.08934 1.07774 1.69152 1.21884 0.96673 0.85245 0.98124 1.21882 0.96910 1.01107 0.96883 1.21961 0.94259 0.97715 1.03617 1.21305 0.82110 0.96636 0.97089 0.90402 1.47403 1.06363 1.50996 1.28189 1.22062 0.96762 0.96732 0.86878 1.21283 0.89882 0.98354 0.90260 1.44240 1.20442 1.54452 1.12786 1.19157 0.91404 1.05102 1.22863 0.90767 1.25001 0.97810 0.95529 1.01245 1.69967 1.37628 1.12576 1.34839 0.86223 0.81786 0.80113 0.78231 1.21270 1.21382 1.20355 1.21020 0.83750 0.94802 0.96750 1.22103 0.92043 0.75726 0.80538 1.90496 1.70481 1.52758 1.31130 1.22213 0.79461 1.02830 0.98433 0.92787 0.92508 0.92441 0.91512 0.91030 0.91798 0.91253 0.91862 0.89555 0.90854 0.91800 0.90465 0.88927 0.91853 0.92358 0.92028 0.90553 0.94990 0.93167 0.92031 0.86541 0.89630 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.11 -0.99 4.72 -26.73 -0.13 -1.11 16 3 C -0.11 -1.03 1.86 -91.77 -0.17 -1.20 16 4 H 0.09 0.70 7.16 -51.93 -0.37 0.33 16 5 C -0.15 -1.15 8.36 37.16 0.31 -0.84 16 6 C 0.52 7.10 6.93 -10.99 -0.08 7.02 16 7 O -0.54 -9.72 15.52 5.56 0.09 -9.63 16 8 N -0.61 -8.08 2.97 -172.77 -0.51 -8.60 16 9 C 0.10 1.03 5.27 -3.71 -0.02 1.01 16 10 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 11 C -0.14 -1.82 5.03 -26.69 -0.13 -1.96 16 12 C 0.13 2.02 2.61 -67.82 -0.18 1.84 16 13 H 0.08 1.07 7.73 -51.93 -0.40 0.67 16 14 N -0.60 -10.58 2.79 -167.17 -0.47 -11.05 16 15 C 0.10 1.63 6.45 -4.51 -0.03 1.60 16 16 C 0.13 2.41 6.61 -3.50 -0.02 2.39 16 17 N -0.59 -14.18 3.04 -173.50 -0.53 -14.71 16 18 C -0.26 -6.72 9.73 -15.06 -0.15 -6.87 16 19 H 0.07 1.88 7.89 -52.48 -0.41 1.46 16 20 C 0.00 0.08 4.98 -17.44 -0.09 -0.01 16 21 N -0.91 -25.60 11.06 55.49 0.61 -24.99 16 22 Si 0.91 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.16 3.96 5.16 -5.02 -0.03 3.93 16 27 C 0.51 10.69 6.98 -11.73 -0.08 10.60 16 28 O -0.57 -12.60 12.46 5.56 0.07 -12.53 16 29 C 0.09 1.54 5.64 -3.71 -0.02 1.52 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.34 6.71 -51.93 -0.35 -0.01 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.06 0.48 6.16 -51.93 -0.32 0.16 16 36 H 0.07 0.40 6.88 -51.93 -0.36 0.04 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.62 4.78 -51.93 -0.25 0.37 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.49 6.09 -51.93 -0.32 1.17 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.80 7.94 -51.93 -0.41 0.38 16 46 H 0.08 1.33 7.97 -51.93 -0.41 0.92 16 47 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 48 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 50 H 0.12 3.18 6.34 -51.93 -0.33 2.85 16 51 H 0.09 1.60 7.04 -51.93 -0.37 1.23 16 52 H 0.10 1.96 5.66 -51.93 -0.29 1.67 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -31.49 389.15 -9.31 -40.80 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.80 Total: 2.68 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -0.61 Total: 15.85 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.89 Total: -59.34 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.49 -9.31 -40.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.196 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds