Wall clock time and date at job start Tue Mar 31 2020 20:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 H 1.08995 * 109.47819 * 305.00496 * 3 2 1 5 5 C 1.53004 * 109.46932 * 65.00768 * 3 2 1 6 6 C 1.50698 * 109.47000 * 185.00278 * 3 2 1 7 7 O 1.21281 * 120.00041 * 345.55161 * 6 3 2 8 8 N 1.34776 * 120.00158 * 165.55313 * 6 3 2 9 9 C 1.46925 * 120.63084 * 5.57728 * 8 6 3 10 10 C 1.53187 * 108.77610 * 233.63474 * 9 8 6 11 11 C 1.53044 * 109.31456 * 305.36206 * 10 9 8 12 12 C 1.53035 * 109.53608 * 61.36504 * 11 10 9 13 13 H 1.09003 * 109.52277 * 58.60745 * 12 11 10 14 14 N 1.46499 * 109.50041 * 178.68530 * 12 11 10 15 15 C 1.45646 * 117.70726 * 239.82173 * 14 12 11 16 16 C 1.52986 * 110.77443 * 158.12159 * 15 14 12 17 17 N 1.47512 * 108.23750 * 46.75445 * 16 15 14 18 18 C 1.36935 * 121.51561 * 118.48047 * 17 16 15 19 19 H 1.08006 * 119.99612 * 338.06432 * 18 17 16 20 20 C 1.38807 * 120.00277 * 158.06465 * 18 17 16 21 21 N 1.31612 * 119.99984 * 342.49720 * 20 18 17 22 22 Si 1.86806 * 120.00115 * 162.49996 * 20 18 17 23 23 H 1.48499 * 109.47266 * 89.99792 * 22 20 18 24 24 H 1.48496 * 109.47143 * 210.00204 * 22 20 18 25 25 H 1.48506 * 109.46773 * 329.99774 * 22 20 18 26 26 C 1.47053 * 117.13356 * 298.53326 * 17 16 15 27 27 C 1.33383 * 117.70142 * 59.83536 * 14 12 11 28 28 O 1.21279 * 118.49105 * 4.27875 * 27 14 12 29 29 C 1.46932 * 120.63392 * 185.60457 * 8 6 3 30 30 H 1.08997 * 109.47307 * 59.99543 * 1 2 3 31 31 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46894 * 299.99643 * 1 2 3 33 33 H 1.09000 * 109.46585 * 240.00557 * 2 1 3 34 34 H 1.09000 * 109.46949 * 120.00840 * 2 1 3 35 35 H 1.08993 * 109.46946 * 173.67429 * 5 3 2 36 36 H 1.09006 * 109.46798 * 293.67226 * 5 3 2 37 37 H 1.08993 * 109.47292 * 53.66994 * 5 3 2 38 38 H 1.09006 * 109.58315 * 353.41775 * 9 8 6 39 39 H 1.09000 * 109.58649 * 113.84426 * 9 8 6 40 40 H 1.09001 * 109.50049 * 65.31889 * 10 9 8 41 41 H 1.09005 * 109.49925 * 185.41227 * 10 9 8 42 42 H 1.09002 * 109.45668 * 301.34964 * 11 10 9 43 43 H 1.08995 * 109.45994 * 181.38814 * 11 10 9 44 44 H 1.09000 * 109.21689 * 278.45312 * 15 14 12 45 45 H 1.09001 * 109.21391 * 37.78361 * 15 14 12 46 46 H 1.08999 * 109.72400 * 166.39836 * 16 15 14 47 47 H 1.09010 * 109.71691 * 287.00759 * 16 15 14 48 48 H 0.97002 * 120.00184 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.56546 * 282.82442 * 26 17 16 50 50 H 1.09001 * 109.56838 * 162.59474 * 26 17 16 51 51 H 1.09003 * 109.58077 * 6.57835 * 29 8 6 52 52 H 1.08998 * 109.58068 * 246.15863 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5419 1.4442 -0.1239 7 8 4.1665 0.4206 0.0577 8 7 4.1910 2.5832 -0.4365 9 6 3.4632 3.8554 -0.5398 10 6 3.7605 4.4841 -1.9047 11 6 5.2751 4.6102 -2.0848 12 6 5.9127 3.2196 -2.0444 13 1 5.4841 2.5993 -2.8317 14 7 7.3586 3.3384 -2.2482 15 6 7.9399 2.6505 -3.3929 16 6 9.2800 3.2787 -3.7802 17 7 10.0763 3.4615 -2.5520 18 6 11.2804 2.8325 -2.3793 19 1 11.5103 1.9418 -2.9452 20 6 12.2052 3.3397 -1.4770 21 7 12.0946 4.5789 -1.0478 22 14 13.6069 2.2632 -0.8718 23 1 14.7752 2.4175 -1.7754 24 1 13.9874 2.6730 0.5038 25 1 13.1722 0.8432 -0.8629 26 6 9.5212 4.3483 -1.5186 27 6 8.0502 4.0688 -1.3724 28 8 7.4664 4.5291 -0.4142 29 6 5.6398 2.5764 -0.6811 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 2.0927 3.1145 1.3572 36 1 0.5505 2.2258 1.3449 37 1 1.9746 1.5262 2.1516 38 1 2.3926 3.6724 -0.4473 39 1 3.7907 4.5291 0.2520 40 1 3.3516 3.8523 -2.6932 41 1 3.3044 5.4728 -1.9570 42 1 5.6866 5.2218 -1.2819 43 1 5.4887 5.0799 -3.0449 44 1 8.0950 1.6016 -3.1402 45 1 7.2545 2.7177 -4.2378 46 1 9.8107 2.6190 -4.4667 47 1 9.1096 4.2445 -4.2561 48 1 12.7412 4.9334 -0.4175 49 1 9.6680 5.3876 -1.8122 50 1 10.0242 4.1626 -0.5696 51 1 6.0053 1.5495 -0.6818 52 1 6.1447 3.1457 0.0992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:49 Heat of formation + Delta-G solvation = -64.527284 kcal Electronic energy + Delta-G solvation = -31287.421854 eV Core-core repulsion = 27286.691623 eV Total energy + Delta-G solvation = -4000.730231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.03850 -41.00845 -38.40548 -37.71888 -36.51371 -36.06744 -33.91079 -33.06581 -31.57294 -30.60236 -30.21606 -28.17070 -27.07059 -25.61946 -25.33420 -24.57547 -23.34642 -22.67262 -21.28691 -19.93881 -19.79779 -18.66047 -18.20911 -17.88958 -17.22357 -17.12191 -16.47623 -16.41721 -16.28632 -15.73660 -15.43791 -15.29536 -15.24531 -14.96576 -14.81053 -14.61574 -14.24518 -14.18066 -13.90598 -13.76942 -13.41899 -13.32471 -13.22952 -13.01472 -12.78859 -12.70875 -12.59095 -12.58450 -12.42586 -12.33802 -12.18867 -11.91004 -11.87131 -11.79058 -11.76605 -11.65662 -11.58145 -10.78007 -10.69267 -10.56378 -9.95795 -9.43037 -8.91372 -7.96624 -5.38294 1.44171 1.48150 1.54300 1.56430 1.62770 1.79210 2.25007 2.45639 3.21368 3.42159 3.44802 3.62738 3.77312 3.86623 3.91762 3.97242 4.01698 4.07862 4.15235 4.20674 4.31681 4.44711 4.46982 4.51578 4.53725 4.60783 4.64990 4.70454 4.73479 4.77131 4.88137 4.90081 4.93159 4.94333 4.99542 5.06682 5.09965 5.14732 5.16877 5.21781 5.25623 5.27338 5.37377 5.42514 5.51033 5.57791 5.69671 6.19828 6.39157 6.50627 6.94083 7.11554 7.22525 7.68501 8.19692 9.12170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002831 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.840091 B = 9888.290376 C =10392.667916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.100 4.100 4 H 0.126 0.874 5 C -0.146 4.146 6 C 0.507 3.493 7 O -0.594 6.594 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.120 4.120 11 C -0.133 4.133 12 C 0.136 3.864 13 H 0.104 0.896 14 N -0.591 5.591 15 C 0.103 3.897 16 C 0.125 3.875 17 N -0.612 5.612 18 C -0.260 4.260 19 H 0.084 0.916 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.272 1.272 26 C 0.175 3.825 27 C 0.507 3.493 28 O -0.585 6.585 29 C 0.102 3.898 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.039 0.961 50 H 0.076 0.924 51 H 0.055 0.945 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.660 -1.998 -4.245 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.121 4.121 4 H 0.144 0.856 5 C -0.204 4.204 6 C 0.298 3.702 7 O -0.475 6.475 8 N -0.337 5.337 9 C -0.023 4.023 10 C -0.158 4.158 11 C -0.171 4.171 12 C 0.032 3.968 13 H 0.122 0.878 14 N -0.323 5.323 15 C -0.020 4.020 16 C 0.000 4.000 17 N -0.338 5.338 18 C -0.389 4.389 19 H 0.102 0.898 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.796 3.204 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.197 1.197 26 C 0.046 3.954 27 C 0.297 3.703 28 O -0.466 6.466 29 C -0.023 4.023 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.467 -2.236 -3.592 26.803 hybrid contribution 1.922 -0.364 0.703 2.079 sum -24.545 -2.601 -2.889 24.851 Atomic orbital electron populations 1.21791 0.92879 1.02482 1.03121 1.21340 0.97408 0.93943 1.01677 1.21423 0.88237 0.99878 1.02551 0.85626 1.21937 1.03991 1.00244 0.94186 1.21658 0.91912 0.81913 0.74767 1.90669 1.70422 1.34263 1.52128 1.48205 1.07551 1.09267 1.68629 1.22196 0.98294 0.83392 0.98464 1.21883 0.93883 1.03120 0.96906 1.21904 0.96886 0.95525 1.02817 1.21504 0.80179 0.98399 0.96735 0.87800 1.47369 1.07729 1.49547 1.27647 1.22109 0.96420 0.95820 0.87700 1.21529 0.90545 0.99359 0.88554 1.44460 1.20446 1.54199 1.14670 1.19549 0.91889 1.05218 1.22248 0.89840 1.25760 1.00481 0.96556 1.02061 1.70126 1.38545 1.14163 1.35702 0.85267 0.79363 0.78707 0.77091 1.20509 1.22392 1.19655 1.20590 0.85742 0.93907 0.95157 1.21377 0.90879 0.76843 0.81242 1.90500 1.70438 1.53757 1.31914 1.21797 0.81715 1.00329 0.98437 0.91197 0.92397 0.91228 0.93093 0.93328 0.91341 0.88135 0.93623 0.85747 0.91614 0.89771 0.87643 0.92194 0.90932 0.92560 0.87132 0.89009 0.94136 0.93891 0.94328 0.90623 0.92650 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.11 -1.82 4.72 30.59 0.14 -1.67 16 3 C -0.10 -1.60 1.86 -11.54 -0.02 -1.62 16 4 H 0.13 1.23 7.16 -2.39 -0.02 1.21 16 5 C -0.15 -1.83 8.36 71.98 0.60 -1.23 16 6 C 0.51 13.58 6.93 87.66 0.61 14.18 16 7 O -0.59 -22.04 15.52 -3.03 -0.05 -22.09 16 8 N -0.60 -15.43 2.97 -818.90 -2.43 -17.86 16 9 C 0.10 1.63 5.27 86.36 0.45 2.09 16 10 C -0.12 -1.79 6.08 30.67 0.19 -1.60 16 11 C -0.13 -3.24 5.03 30.62 0.15 -3.08 16 12 C 0.14 3.89 2.61 45.07 0.12 4.01 16 13 H 0.10 2.50 7.73 -2.39 -0.02 2.48 16 14 N -0.59 -20.62 2.79 -801.96 -2.24 -22.86 16 15 C 0.10 3.10 6.45 86.54 0.56 3.66 16 16 C 0.13 4.52 6.61 86.18 0.57 5.09 16 17 N -0.61 -29.76 3.04 -702.82 -2.13 -31.90 16 18 C -0.26 -13.81 9.73 84.03 0.82 -13.00 16 19 H 0.08 4.20 7.89 -2.91 -0.02 4.17 16 20 C -0.05 -2.97 4.98 84.86 0.42 -2.55 16 21 N -0.94 -55.62 11.06 21.65 0.24 -55.38 16 22 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.17 8.85 5.16 85.44 0.44 9.30 16 27 C 0.51 22.22 6.98 87.79 0.61 22.83 16 28 O -0.58 -27.23 12.46 -3.03 -0.04 -27.27 16 29 C 0.10 3.40 5.64 86.36 0.49 3.89 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.55 6.71 -2.38 -0.02 0.54 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.07 0.81 6.16 -2.39 -0.01 0.80 16 36 H 0.10 0.68 6.88 -2.38 -0.02 0.66 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 1.15 4.78 -2.38 -0.01 1.14 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.06 1.90 6.09 -2.39 -0.01 1.88 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.11 2.34 7.94 -2.39 -0.02 2.32 16 46 H 0.09 3.01 7.97 -2.39 -0.02 2.99 16 47 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.08 4.44 6.34 -2.39 -0.02 4.43 16 51 H 0.05 2.16 7.04 -2.39 -0.02 2.15 16 52 H 0.07 2.70 5.66 -2.39 -0.01 2.68 16 Total: -1.00 -75.51 389.15 3.13 -72.37 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.90 Total: 18.42 kcal Atomic # 6 Polarization: 32.66 SS G_CDS: 6.85 Total: 39.51 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -6.56 Total: -128.00 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.08 Total: -49.36 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.51 3.13 -72.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.848 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds