Wall clock time and date at job start Tue Mar 31 2020 20:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47174 * 2 1 4 4 H 1.09002 * 110.45953 * 60.44986 * 3 2 1 5 5 C 1.54374 * 110.41190 * 298.03598 * 3 2 1 6 6 H 1.09007 * 110.41091 * 336.30763 * 5 3 2 7 7 C 1.50699 * 110.32767 * 98.47046 * 5 3 2 8 8 O 1.21280 * 119.99954 * 23.10042 * 7 5 3 9 9 N 1.34777 * 120.00291 * 203.10718 * 7 5 3 10 10 C 1.44960 * 117.33888 * 5.25836 * 9 7 5 11 11 C 1.51966 * 111.94878 * 203.76345 * 10 9 7 12 12 O 1.41319 * 111.61427 * 319.73678 * 11 10 9 13 13 C 1.40857 * 118.30269 * 56.87180 * 12 11 10 14 14 H 1.08998 * 109.53770 * 187.70235 * 13 12 11 15 15 C 1.53915 * 110.46812 * 68.13386 * 13 12 11 16 16 N 1.46783 * 107.61967 * 221.60909 * 15 13 12 17 17 C 1.36942 * 125.36479 * 178.71240 * 16 15 13 18 18 H 1.07997 * 119.99763 * 195.09786 * 17 16 15 19 19 C 1.38811 * 119.99455 * 15.09771 * 17 16 15 20 20 N 1.31621 * 119.99526 * 192.21460 * 19 17 16 21 21 Si 1.86796 * 120.00508 * 12.21772 * 19 17 16 22 22 H 1.48498 * 109.47243 * 54.90316 * 21 19 17 23 23 H 1.48496 * 109.47120 * 294.90106 * 21 19 17 24 24 H 1.48506 * 109.47143 * 174.90122 * 21 19 17 25 25 C 1.46870 * 109.27054 * 358.44568 * 16 15 13 26 26 C 1.44550 * 117.33942 * 185.26022 * 9 7 5 27 27 H 1.09001 * 109.32433 * 286.12334 * 26 9 7 28 28 C 1.54257 * 105.06165 * 217.37095 * 5 3 2 29 29 C 1.54381 * 105.05920 * 359.97438 * 28 5 3 30 30 N 1.48552 * 110.41193 * 182.86129 * 3 2 1 31 31 C 1.46902 * 111.00223 * 277.81953 * 30 3 2 32 32 H 1.09003 * 109.47417 * 186.09952 * 1 2 3 33 33 H 1.09005 * 109.47248 * 306.10181 * 1 2 3 34 34 H 1.08997 * 109.47315 * 66.09823 * 1 2 3 35 35 H 1.09003 * 109.47129 * 240.00167 * 2 1 3 36 36 H 1.08996 * 109.47057 * 120.00036 * 2 1 3 37 37 H 1.08999 * 108.98413 * 83.13044 * 10 9 7 38 38 H 1.08994 * 108.92163 * 324.35494 * 10 9 7 39 39 H 1.08999 * 109.04827 * 199.19178 * 11 10 9 40 40 H 1.09000 * 108.99085 * 80.25438 * 11 10 9 41 41 H 1.08994 * 109.94435 * 102.01916 * 15 13 12 42 42 H 1.09007 * 109.71133 * 341.06230 * 15 13 12 43 43 H 0.97005 * 120.00211 * 5.14827 * 20 19 17 44 44 H 1.08997 * 110.06492 * 137.28588 * 25 16 15 45 45 H 1.08995 * 110.06790 * 258.75865 * 25 16 15 46 46 H 1.08995 * 110.32688 * 118.89921 * 28 5 3 47 47 H 1.09009 * 110.32316 * 241.10428 * 28 5 3 48 48 H 1.09005 * 110.40798 * 142.63322 * 29 28 5 49 49 H 1.08996 * 110.41242 * 264.95894 * 29 28 5 50 50 H 1.09000 * 109.46929 * 308.83306 * 31 30 3 51 51 H 1.08997 * 109.47262 * 68.83863 * 31 30 3 52 52 H 1.08998 * 109.47246 * 188.83553 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6921 1.9696 0.8884 5 6 1.5783 2.1768 -1.2770 6 1 1.3694 1.4613 -2.0725 7 6 0.3558 3.0096 -0.9890 8 8 0.1225 3.3725 0.1444 9 7 -0.4784 3.3511 -1.9911 10 6 -0.2101 2.7908 -3.3008 11 6 -0.7971 3.6426 -4.4141 12 8 -2.0771 4.1349 -4.0730 13 6 -2.2074 4.8979 -2.8962 14 1 -3.2627 5.0864 -2.6990 15 6 -1.4877 6.2499 -3.0489 16 7 -0.7849 6.5238 -1.7897 17 6 -0.0071 7.6226 -1.5390 18 1 0.6612 7.6289 -0.6907 19 6 -0.0778 8.7283 -2.3752 20 7 0.8273 9.6797 -2.2860 21 14 -1.4574 8.8661 -3.6270 22 1 -2.7663 8.7398 -2.9370 23 1 -1.3222 7.7831 -4.6339 24 1 -1.3806 10.1850 -4.3052 25 6 -1.0524 5.4368 -0.8389 26 6 -1.5676 4.2463 -1.6721 27 1 -2.3260 3.7045 -1.1069 28 6 2.7636 3.0828 -1.6692 29 6 3.8415 2.8201 -0.5956 30 7 3.5237 1.4675 -0.0695 31 6 4.1165 1.2672 1.2596 32 1 -0.3634 -1.0218 0.1092 33 1 -0.3634 0.6055 0.8304 34 1 -0.3634 0.4164 -0.9395 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 -0.6415 1.7913 -3.3540 38 1 0.8685 2.7191 -3.4404 39 1 -0.8772 3.0397 -5.3186 40 1 -0.1314 4.4842 -4.6054 41 1 -2.2146 7.0379 -3.2454 42 1 -0.7706 6.1942 -3.8680 43 1 1.5848 9.5742 -1.6893 44 1 -0.1350 5.1603 -0.3192 45 1 -1.8104 5.7470 -0.1198 46 1 3.1376 2.8110 -2.6562 47 1 2.4612 4.1300 -1.6532 48 1 4.8350 2.8294 -1.0442 49 1 3.7768 3.5643 0.1982 50 1 3.6659 1.9634 1.9670 51 1 3.9327 0.2446 1.5890 52 1 5.1906 1.4450 1.2089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083087374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:30 Heat of formation + Delta-G solvation = -15.254188 kcal Electronic energy + Delta-G solvation = -32833.386395 eV Core-core repulsion = 28834.792805 eV Total energy + Delta-G solvation = -3998.593589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30423 -39.66590 -37.96670 -36.28250 -35.04638 -33.65590 -32.81461 -32.17369 -30.48793 -28.57560 -28.22485 -27.66766 -26.05883 -24.31774 -23.76585 -23.28020 -21.70250 -21.11087 -20.36677 -19.83730 -18.63577 -17.75685 -17.31922 -17.11277 -16.04968 -15.98602 -15.85903 -15.21843 -14.88201 -14.85445 -14.70118 -14.33990 -14.17750 -13.95246 -13.60212 -13.44732 -13.14337 -12.93280 -12.87637 -12.61039 -12.44796 -12.16977 -11.99209 -11.90972 -11.60457 -11.53496 -11.40840 -11.28627 -11.24233 -11.13942 -11.04188 -10.78782 -10.67478 -10.59073 -10.30598 -9.85767 -9.45866 -9.12207 -8.98599 -8.69795 -8.66104 -8.39465 -7.01782 -6.32650 -3.26804 2.65115 2.89360 3.39461 3.46858 3.68605 3.74677 3.84109 4.32918 4.42509 4.55045 4.59017 4.63694 4.82849 4.89365 4.96885 4.99396 5.07600 5.08933 5.14036 5.16886 5.19394 5.23254 5.29728 5.38739 5.40954 5.43219 5.47803 5.55457 5.56824 5.65252 5.69556 5.73060 5.75246 5.79781 5.89263 5.91435 5.92803 5.94419 6.06123 6.16677 6.21153 6.37819 6.53927 6.64106 6.67376 6.84816 6.95524 7.32927 7.46538 7.70706 8.25512 8.33249 9.02594 9.53186 10.19533 11.17638 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.004397 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.734088 B = 6366.502102 C = 7349.487523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.109 4.109 6 H 0.100 0.900 7 C 0.521 3.479 8 O -0.524 6.524 9 N -0.588 5.588 10 C 0.077 3.923 11 C 0.055 3.945 12 O -0.367 6.367 13 C 0.087 3.913 14 H 0.119 0.881 15 C 0.085 3.915 16 N -0.607 5.607 17 C -0.317 4.317 18 H 0.076 0.924 19 C -0.020 4.020 20 N -0.929 5.929 21 Si 1.071 2.929 22 H -0.297 1.297 23 H -0.288 1.288 24 H -0.301 1.301 25 C 0.118 3.882 26 C 0.112 3.888 27 H 0.078 0.922 28 C -0.113 4.113 29 C 0.035 3.965 30 N -0.512 5.512 31 C 0.013 3.987 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.031 0.969 51 H 0.069 0.931 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -21.518 -0.572 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.036 4.036 4 H 0.094 0.906 5 C -0.132 4.132 6 H 0.118 0.882 7 C 0.309 3.691 8 O -0.401 6.401 9 N -0.321 5.321 10 C -0.047 4.047 11 C -0.022 4.022 12 O -0.284 6.284 13 C 0.028 3.972 14 H 0.137 0.863 15 C -0.040 4.040 16 N -0.336 5.336 17 C -0.445 4.445 18 H 0.094 0.906 19 C -0.219 4.219 20 N -0.570 5.570 21 Si 0.906 3.094 22 H -0.226 1.226 23 H -0.216 1.216 24 H -0.229 1.229 25 C -0.008 4.008 26 C 0.008 3.992 27 H 0.096 0.904 28 C -0.152 4.152 29 C -0.093 4.093 30 N -0.235 5.235 31 C -0.135 4.135 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.701 -20.702 -1.566 20.773 hybrid contribution 0.569 -0.232 1.831 1.931 sum 1.269 -20.934 0.265 20.974 Atomic orbital electron populations 1.21777 0.95487 1.01514 1.02204 1.21414 0.95426 0.95008 1.02442 1.22713 0.87752 0.96163 0.97014 0.90574 1.22126 0.93591 0.97666 0.99769 0.88231 1.20417 0.83637 0.80313 0.84749 1.90636 1.73943 1.53957 1.21564 1.46629 1.29292 1.47079 1.09118 1.21687 1.01713 0.97486 0.83803 1.22309 0.85952 0.97548 0.96407 1.86907 1.29656 1.69904 1.41925 1.22548 1.00896 0.90446 0.83282 0.86305 1.22503 0.95551 0.94280 0.91684 1.44586 1.57555 1.23280 1.08181 1.20139 1.17746 0.92362 1.14217 0.90583 1.25900 1.03179 0.91898 1.00923 1.70888 1.11930 1.34595 1.39613 0.83793 0.75326 0.74131 0.76166 1.22564 1.21580 1.22914 1.21945 1.00841 0.85735 0.92234 1.21663 0.88846 0.91617 0.97086 0.90372 1.22247 0.93360 1.00058 0.99496 1.23086 0.99319 0.89713 0.97213 1.65365 1.07357 1.27697 1.23121 1.22506 0.99975 1.01505 0.89552 0.92591 0.92299 0.93045 0.91229 0.91901 0.91492 0.89630 0.87392 0.92255 0.94729 0.93319 0.92878 0.90391 0.94974 0.90063 0.90198 0.89712 0.93285 0.95069 0.91263 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.17 37.16 0.34 -1.21 16 2 C -0.10 -1.05 5.56 -26.73 -0.15 -1.20 16 3 C 0.07 0.87 1.89 -66.08 -0.12 0.75 16 4 H 0.08 1.13 6.51 -51.93 -0.34 0.79 16 5 C -0.11 -1.36 1.36 -90.39 -0.12 -1.48 16 6 H 0.10 1.04 6.23 -51.92 -0.32 0.71 16 7 C 0.52 8.15 4.81 -10.99 -0.05 8.10 16 8 O -0.52 -9.90 12.87 5.56 0.07 -9.83 16 9 N -0.59 -9.00 3.09 -168.82 -0.52 -9.53 16 10 C 0.08 0.91 5.60 -5.39 -0.03 0.88 16 11 C 0.06 0.70 6.72 36.63 0.25 0.95 16 12 O -0.37 -5.74 10.25 -34.45 -0.35 -6.10 16 13 C 0.09 1.52 3.82 -26.40 -0.10 1.42 16 14 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 15 C 0.09 1.87 4.30 -3.41 -0.01 1.86 16 16 N -0.61 -15.12 3.29 -171.43 -0.56 -15.69 16 17 C -0.32 -9.24 10.53 -15.06 -0.16 -9.40 16 18 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 19 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 20 N -0.93 -29.41 13.70 55.49 0.76 -28.65 16 21 Si 1.07 27.21 24.54 -169.99 -4.17 23.03 16 22 H -0.30 -7.28 6.88 56.52 0.39 -6.89 16 23 H -0.29 -6.73 5.53 56.52 0.31 -6.42 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 C 0.12 2.56 6.29 -3.23 -0.02 2.54 16 26 C 0.11 1.96 3.35 -68.50 -0.23 1.73 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 C -0.11 -1.42 6.03 -25.35 -0.15 -1.58 16 29 C 0.03 0.41 6.49 -2.17 -0.01 0.40 16 30 N -0.51 -5.84 5.34 -230.34 -1.23 -7.07 16 31 C 0.01 0.13 9.43 60.07 0.57 0.70 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.54 6.96 -51.93 -0.36 0.18 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.88 5.89 -51.93 -0.31 0.58 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.87 6.83 -51.93 -0.35 0.52 16 41 H 0.04 0.81 3.58 -51.93 -0.19 0.63 16 42 H 0.05 1.13 5.46 -51.93 -0.28 0.84 16 43 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 44 H 0.08 1.84 5.09 -51.93 -0.26 1.57 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.25 7.70 -51.92 -0.40 0.85 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 50 H 0.03 0.33 7.91 -51.93 -0.41 -0.08 16 51 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 52 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -33.84 375.33 -9.23 -43.07 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.77 Total: 1.32 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.11 Total: 3.77 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -1.56 Total: -60.94 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.28 Total: -15.92 kcal Atomic # 14 Polarization: 27.21 SS G_CDS: -4.17 Total: 23.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.84 -9.23 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083087374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.818 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds