Wall clock time and date at job start Tue Mar 31 2020 20:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47174 * 2 1 4 4 H 1.09002 * 110.45953 * 60.44986 * 3 2 1 5 5 C 1.54374 * 110.41190 * 298.03598 * 3 2 1 6 6 H 1.09007 * 110.41091 * 336.30763 * 5 3 2 7 7 C 1.50699 * 110.32767 * 98.47046 * 5 3 2 8 8 O 1.21280 * 119.99954 * 23.10042 * 7 5 3 9 9 N 1.34777 * 120.00291 * 203.10718 * 7 5 3 10 10 C 1.44960 * 117.33888 * 5.25836 * 9 7 5 11 11 C 1.51966 * 111.94878 * 203.76345 * 10 9 7 12 12 O 1.41319 * 111.61427 * 319.73678 * 11 10 9 13 13 C 1.40857 * 118.30269 * 56.87180 * 12 11 10 14 14 H 1.08998 * 109.53770 * 187.70235 * 13 12 11 15 15 C 1.53915 * 110.46812 * 68.13386 * 13 12 11 16 16 N 1.46783 * 107.61967 * 221.60909 * 15 13 12 17 17 C 1.36942 * 125.36479 * 178.71240 * 16 15 13 18 18 H 1.07997 * 119.99763 * 195.09786 * 17 16 15 19 19 C 1.38811 * 119.99455 * 15.09771 * 17 16 15 20 20 N 1.31621 * 119.99526 * 192.21460 * 19 17 16 21 21 Si 1.86796 * 120.00508 * 12.21772 * 19 17 16 22 22 H 1.48498 * 109.47243 * 54.90316 * 21 19 17 23 23 H 1.48496 * 109.47120 * 294.90106 * 21 19 17 24 24 H 1.48506 * 109.47143 * 174.90122 * 21 19 17 25 25 C 1.46870 * 109.27054 * 358.44568 * 16 15 13 26 26 C 1.44550 * 117.33942 * 185.26022 * 9 7 5 27 27 H 1.09001 * 109.32433 * 286.12334 * 26 9 7 28 28 C 1.54257 * 105.06165 * 217.37095 * 5 3 2 29 29 C 1.54381 * 105.05920 * 359.97438 * 28 5 3 30 30 N 1.48552 * 110.41193 * 182.86129 * 3 2 1 31 31 C 1.46902 * 111.00223 * 277.81953 * 30 3 2 32 32 H 1.09003 * 109.47417 * 186.09952 * 1 2 3 33 33 H 1.09005 * 109.47248 * 306.10181 * 1 2 3 34 34 H 1.08997 * 109.47315 * 66.09823 * 1 2 3 35 35 H 1.09003 * 109.47129 * 240.00167 * 2 1 3 36 36 H 1.08996 * 109.47057 * 120.00036 * 2 1 3 37 37 H 1.08999 * 108.98413 * 83.13044 * 10 9 7 38 38 H 1.08994 * 108.92163 * 324.35494 * 10 9 7 39 39 H 1.08999 * 109.04827 * 199.19178 * 11 10 9 40 40 H 1.09000 * 108.99085 * 80.25438 * 11 10 9 41 41 H 1.08994 * 109.94435 * 102.01916 * 15 13 12 42 42 H 1.09007 * 109.71133 * 341.06230 * 15 13 12 43 43 H 0.97005 * 120.00211 * 5.14827 * 20 19 17 44 44 H 1.08997 * 110.06492 * 137.28588 * 25 16 15 45 45 H 1.08995 * 110.06790 * 258.75865 * 25 16 15 46 46 H 1.08995 * 110.32688 * 118.89921 * 28 5 3 47 47 H 1.09009 * 110.32316 * 241.10428 * 28 5 3 48 48 H 1.09005 * 110.40798 * 142.63322 * 29 28 5 49 49 H 1.08996 * 110.41242 * 264.95894 * 29 28 5 50 50 H 1.09000 * 109.46929 * 308.83306 * 31 30 3 51 51 H 1.08997 * 109.47262 * 68.83863 * 31 30 3 52 52 H 1.08998 * 109.47246 * 188.83553 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6921 1.9696 0.8884 5 6 1.5783 2.1768 -1.2770 6 1 1.3694 1.4613 -2.0725 7 6 0.3558 3.0096 -0.9890 8 8 0.1225 3.3725 0.1444 9 7 -0.4784 3.3511 -1.9911 10 6 -0.2101 2.7908 -3.3008 11 6 -0.7971 3.6426 -4.4141 12 8 -2.0771 4.1349 -4.0730 13 6 -2.2074 4.8979 -2.8962 14 1 -3.2627 5.0864 -2.6990 15 6 -1.4877 6.2499 -3.0489 16 7 -0.7849 6.5238 -1.7897 17 6 -0.0071 7.6226 -1.5390 18 1 0.6612 7.6289 -0.6907 19 6 -0.0778 8.7283 -2.3752 20 7 0.8273 9.6797 -2.2860 21 14 -1.4574 8.8661 -3.6270 22 1 -2.7663 8.7398 -2.9370 23 1 -1.3222 7.7831 -4.6339 24 1 -1.3806 10.1850 -4.3052 25 6 -1.0524 5.4368 -0.8389 26 6 -1.5676 4.2463 -1.6721 27 1 -2.3260 3.7045 -1.1069 28 6 2.7636 3.0828 -1.6692 29 6 3.8415 2.8201 -0.5956 30 7 3.5237 1.4675 -0.0695 31 6 4.1165 1.2672 1.2596 32 1 -0.3634 -1.0218 0.1092 33 1 -0.3634 0.6055 0.8304 34 1 -0.3634 0.4164 -0.9395 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 -0.6415 1.7913 -3.3540 38 1 0.8685 2.7191 -3.4404 39 1 -0.8772 3.0397 -5.3186 40 1 -0.1314 4.4842 -4.6054 41 1 -2.2146 7.0379 -3.2454 42 1 -0.7706 6.1942 -3.8680 43 1 1.5848 9.5742 -1.6893 44 1 -0.1350 5.1603 -0.3192 45 1 -1.8104 5.7470 -0.1198 46 1 3.1376 2.8110 -2.6562 47 1 2.4612 4.1300 -1.6532 48 1 4.8350 2.8294 -1.0442 49 1 3.7768 3.5643 0.1982 50 1 3.6659 1.9634 1.9670 51 1 3.9327 0.2446 1.5890 52 1 5.1906 1.4450 1.2089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083087374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:29 Heat of formation + Delta-G solvation = -41.696395 kcal Electronic energy + Delta-G solvation = -32834.533015 eV Core-core repulsion = 28834.792805 eV Total energy + Delta-G solvation = -3999.740209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54328 -40.83227 -39.12552 -37.92410 -36.28538 -34.74104 -34.46026 -33.39712 -32.07918 -29.96619 -29.66919 -28.78530 -27.10180 -26.01504 -24.97034 -24.37907 -22.90560 -22.53063 -21.78414 -20.95260 -19.99628 -19.51206 -18.67574 -18.50082 -17.54530 -17.16136 -16.96309 -16.42265 -16.16675 -16.09751 -15.75933 -15.68285 -15.43036 -15.23594 -15.07820 -14.72250 -14.61526 -14.34928 -13.96277 -13.86030 -13.62635 -13.48426 -13.39236 -13.07595 -12.96226 -12.88016 -12.65136 -12.53515 -12.48740 -12.17820 -12.15269 -12.08424 -11.82465 -11.70079 -11.56760 -11.47383 -11.28432 -11.13558 -10.67318 -10.43258 -9.66676 -9.63576 -9.14834 -8.74065 -5.59868 1.34374 1.43281 1.44262 1.66827 1.72764 2.47065 2.58884 2.84907 3.06040 3.19173 3.29292 3.36001 3.43701 3.52689 3.61484 3.81348 3.94190 3.99533 4.04276 4.10729 4.13567 4.22264 4.24437 4.30231 4.34229 4.36446 4.42834 4.49800 4.52527 4.58880 4.63044 4.64994 4.78211 4.79327 4.81586 4.84282 4.90109 4.92103 4.94114 4.98221 5.02807 5.10930 5.22607 5.36357 5.45324 5.53437 5.70968 5.91882 6.00717 6.13609 6.27552 6.73512 7.05205 7.32801 7.97528 8.77791 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.004397 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.734088 B = 6366.502102 C = 7349.487523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C 0.072 3.928 4 H 0.040 0.960 5 C -0.101 4.101 6 H 0.133 0.867 7 C 0.516 3.484 8 O -0.567 6.567 9 N -0.592 5.592 10 C 0.069 3.931 11 C 0.047 3.953 12 O -0.363 6.363 13 C 0.103 3.897 14 H 0.145 0.855 15 C 0.077 3.923 16 N -0.622 5.622 17 C -0.312 4.312 18 H 0.033 0.967 19 C -0.072 4.072 20 N -0.960 5.960 21 Si 1.113 2.887 22 H -0.281 1.281 23 H -0.254 1.254 24 H -0.308 1.308 25 C 0.116 3.884 26 C 0.123 3.877 27 H 0.097 0.903 28 C -0.111 4.111 29 C 0.033 3.967 30 N -0.503 5.503 31 C 0.012 3.988 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.039 0.961 43 H 0.246 0.754 44 H 0.052 0.948 45 H 0.025 0.975 46 H 0.111 0.889 47 H 0.037 0.963 48 H 0.105 0.895 49 H 0.022 0.978 50 H 0.014 0.986 51 H 0.086 0.914 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -25.450 -3.288 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.037 4.037 4 H 0.058 0.942 5 C -0.123 4.123 6 H 0.151 0.849 7 C 0.305 3.695 8 O -0.446 6.446 9 N -0.325 5.325 10 C -0.053 4.053 11 C -0.030 4.030 12 O -0.279 6.279 13 C 0.043 3.957 14 H 0.162 0.838 15 C -0.047 4.047 16 N -0.351 5.351 17 C -0.440 4.440 18 H 0.051 0.949 19 C -0.265 4.265 20 N -0.603 5.603 21 Si 0.940 3.060 22 H -0.208 1.208 23 H -0.179 1.179 24 H -0.237 1.237 25 C -0.009 4.009 26 C 0.018 3.982 27 H 0.115 0.885 28 C -0.149 4.149 29 C -0.095 4.095 30 N -0.226 5.226 31 C -0.137 4.137 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.172 0.828 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.129 0.871 47 H 0.056 0.944 48 H 0.123 0.877 49 H 0.040 0.960 50 H 0.033 0.967 51 H 0.104 0.896 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.462 -24.699 -4.294 25.074 hybrid contribution 1.053 0.979 2.791 3.139 sum 0.590 -23.720 -1.504 23.775 Atomic orbital electron populations 1.21741 0.95542 1.02195 1.01068 1.21387 0.95230 0.93272 1.03634 1.22701 0.88203 0.97341 0.95415 0.94190 1.22177 0.91706 0.97538 1.00879 0.84918 1.21017 0.84239 0.80036 0.84203 1.90622 1.74906 1.55591 1.23476 1.46786 1.28659 1.46455 1.10621 1.22042 1.03191 0.98681 0.81399 1.22660 0.84423 0.97447 0.98432 1.86940 1.31101 1.69204 1.40694 1.22430 1.01397 0.87942 0.83909 0.83800 1.22661 0.95169 0.97252 0.89636 1.44568 1.57348 1.22710 1.10437 1.19937 1.17157 0.94279 1.12630 0.94894 1.27246 1.04652 0.91494 1.03059 1.70994 1.12662 1.36020 1.40669 0.83313 0.72995 0.74721 0.74931 1.20825 1.17913 1.23715 1.21963 0.99653 0.86850 0.92465 1.21436 0.89680 0.90342 0.96723 0.88485 1.22236 0.93737 0.97677 1.01275 1.23114 1.00252 0.89632 0.96493 1.65449 1.06806 1.26586 1.23785 1.22589 1.00566 1.02049 0.88496 0.90574 0.94894 0.93066 0.89383 0.91253 0.87765 0.88021 0.82816 0.94662 0.94968 0.94331 0.94501 0.93004 0.95701 0.87059 0.94362 0.87709 0.95983 0.96749 0.89569 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.17 71.98 0.66 -2.01 16 2 C -0.10 -1.70 5.56 30.59 0.17 -1.53 16 3 C 0.07 1.69 1.89 45.06 0.09 1.78 16 4 H 0.04 1.24 6.51 -2.39 -0.02 1.23 16 5 C -0.10 -2.36 1.36 -10.65 -0.01 -2.37 16 6 H 0.13 2.20 6.23 -2.38 -0.01 2.19 16 7 C 0.52 16.00 4.81 87.66 0.42 16.42 16 8 O -0.57 -22.42 12.87 -3.03 -0.04 -22.46 16 9 N -0.59 -17.08 3.09 -806.41 -2.49 -19.57 16 10 C 0.07 1.34 5.60 86.33 0.48 1.83 16 11 C 0.05 1.00 6.72 71.64 0.48 1.48 16 12 O -0.36 -9.81 10.25 -146.20 -1.50 -11.31 16 13 C 0.10 3.28 3.82 30.81 0.12 3.40 16 14 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.08 3.30 4.30 86.63 0.37 3.67 16 16 N -0.62 -31.69 3.29 -696.28 -2.29 -33.98 16 17 C -0.31 -19.08 10.53 84.03 0.89 -18.19 16 18 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 19 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.96 -63.42 13.70 21.65 0.30 -63.12 16 21 Si 1.11 55.01 24.54 68.60 1.68 56.70 16 22 H -0.28 -13.05 6.88 99.48 0.68 -12.37 16 23 H -0.25 -11.08 5.53 99.48 0.55 -10.53 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 25 C 0.12 5.19 6.29 86.71 0.55 5.74 16 26 C 0.12 4.13 3.35 45.66 0.15 4.28 16 27 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 28 C -0.11 -2.72 6.03 31.49 0.19 -2.53 16 29 C 0.03 0.79 6.49 86.45 0.56 1.35 16 30 N -0.50 -10.83 5.34 -882.65 -4.72 -15.54 16 31 C 0.01 0.22 9.43 127.69 1.20 1.42 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.05 0.92 6.96 -2.39 -0.02 0.90 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.13 7.70 -2.39 -0.02 1.12 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.67 5.89 -2.39 -0.01 1.66 16 39 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 0.94 6.83 -2.39 -0.02 0.92 16 41 H 0.03 1.44 3.58 -2.39 -0.01 1.43 16 42 H 0.04 1.73 5.46 -2.38 -0.01 1.72 16 43 H 0.25 16.45 8.73 -92.70 -0.81 15.64 16 44 H 0.05 2.61 5.09 -2.39 -0.01 2.60 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.04 1.26 7.70 -2.38 -0.02 1.24 16 48 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 50 H 0.01 0.31 7.91 -2.39 -0.02 0.29 16 51 H 0.09 1.35 7.72 -2.39 -0.02 1.33 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -79.95 375.33 -1.58 -81.53 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.69 Total: 16.97 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.78 Total: 10.79 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -9.20 Total: -132.22 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.54 Total: -33.77 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.68 Total: 56.70 kcal Total: -79.95 -1.58 -81.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083087374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.836 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds