Wall clock time and date at job start Tue Mar 31 2020 19:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 H 1.09007 * 109.87154 * 306.49728 * 3 2 1 5 5 C 1.54319 * 110.01056 * 67.59512 * 3 2 1 6 6 C 1.55157 * 102.94242 * 141.68414 * 5 3 2 7 7 C 1.55137 * 101.48378 * 324.33182 * 6 5 3 8 8 N 1.47024 * 109.87947 * 185.48242 * 3 2 1 9 9 C 1.34771 * 125.64679 * 61.45556 * 8 3 2 10 10 O 1.21351 * 120.00724 * 355.38294 * 9 8 3 11 11 C 1.49454 * 119.99799 * 175.38622 * 9 8 3 12 12 O 1.21351 * 119.99948 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00112 * 179.97438 * 11 9 8 14 14 C 1.46499 * 119.99725 * 179.97438 * 13 11 9 15 15 H 1.09001 * 109.47311 * 35.00734 * 14 13 11 16 16 C 1.52994 * 109.47475 * 275.00318 * 14 13 11 17 17 C 1.53002 * 109.47320 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47051 * 60.00152 * 17 16 14 19 19 C 1.53003 * 109.47083 * 300.00158 * 18 17 16 20 20 C 1.53002 * 109.47306 * 59.99998 * 19 18 17 21 21 H 1.09002 * 109.46550 * 60.00156 * 20 19 18 22 22 N 1.46493 * 109.47172 * 179.97438 * 20 19 18 23 23 C 1.36933 * 120.00263 * 275.00364 * 22 20 19 24 24 H 1.08002 * 119.99876 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00032 * 180.02562 * 23 22 20 26 26 N 1.31612 * 119.99963 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 119.99716 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46973 * 59.99683 * 27 25 23 29 29 H 1.48500 * 109.46817 * 299.99620 * 27 25 23 30 30 H 1.48501 * 109.46517 * 179.97438 * 27 25 23 31 31 H 1.09008 * 109.47234 * 184.95796 * 1 2 3 32 32 H 1.08996 * 109.47454 * 304.95484 * 1 2 3 33 33 H 1.09001 * 109.47511 * 64.96102 * 1 2 3 34 34 H 1.09007 * 109.46676 * 240.00117 * 2 1 3 35 35 H 1.08995 * 109.47048 * 120.00095 * 2 1 3 36 36 H 1.08994 * 110.72253 * 260.04729 * 5 3 2 37 37 H 1.09000 * 110.72200 * 23.32349 * 5 3 2 38 38 H 1.08995 * 111.00728 * 82.57282 * 6 5 3 39 39 H 1.09002 * 111.00721 * 206.38923 * 6 5 3 40 40 H 1.08997 * 110.49832 * 278.45456 * 7 6 5 41 41 H 1.09000 * 110.33960 * 156.05896 * 7 6 5 42 42 H 0.97001 * 119.99783 * 0.02562 * 13 11 9 43 43 H 1.09001 * 109.47191 * 300.00489 * 16 14 13 44 44 H 1.08999 * 109.47489 * 60.00163 * 16 14 13 45 45 H 1.09000 * 109.46939 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.47054 * 300.00163 * 17 16 14 47 47 H 1.09001 * 109.47183 * 60.00090 * 18 17 16 48 48 H 1.09003 * 109.47324 * 180.02562 * 18 17 16 49 49 H 1.09001 * 109.47056 * 300.00010 * 19 18 17 50 50 H 1.08993 * 109.47262 * 180.02562 * 19 18 17 51 51 H 0.97006 * 119.99894 * 95.00099 * 22 20 19 52 52 H 0.96994 * 120.00562 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9951 -0.8241 5 6 1.6949 2.1246 1.3406 6 6 2.9519 2.9888 1.6244 7 6 4.0820 2.0814 1.0710 8 7 3.5042 1.4551 -0.1321 9 6 4.2028 0.9694 -1.1773 10 8 3.6270 0.3934 -2.0770 11 6 5.6866 1.1402 -1.2285 12 8 6.2624 1.7166 -0.3291 13 7 6.3853 0.6541 -2.2735 14 6 7.8398 0.8220 -2.3238 15 1 8.2481 0.7580 -1.3151 16 6 8.1750 2.1888 -2.9239 17 6 9.6940 2.3639 -2.9770 18 6 10.3043 1.2621 -3.8455 19 6 9.9691 -0.1048 -3.2454 20 6 8.4501 -0.2799 -3.1923 21 1 8.0415 -0.2158 -4.2009 22 7 8.1291 -1.5889 -2.6183 23 6 8.0974 -2.6988 -3.4197 24 1 8.3085 -2.6091 -4.4751 25 6 7.7927 -3.9391 -2.8758 26 7 7.5350 -4.0484 -1.5898 27 14 7.7487 -5.4531 -3.9693 28 1 9.0816 -5.6523 -4.5928 29 1 6.7280 -5.2668 -5.0317 30 1 7.4019 -6.6437 -3.1523 31 1 -0.3634 -1.0239 0.0888 32 1 -0.3634 0.5887 0.8422 33 1 -0.3634 0.4349 -0.9311 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 0.8104 2.7529 1.2372 37 1 1.5522 1.3820 2.1256 38 1 2.9059 3.9345 1.0846 39 1 3.0767 3.1576 2.6941 40 1 4.3527 1.3198 1.8022 41 1 4.9531 2.6804 0.8056 42 1 5.9250 0.1937 -2.9925 43 1 7.7667 2.2528 -3.9325 44 1 7.7399 2.9738 -2.3054 45 1 9.9328 3.3379 -3.4041 46 1 10.1026 2.2998 -1.9685 47 1 9.8957 1.3262 -4.8540 48 1 11.3866 1.3865 -3.8830 49 1 10.3777 -0.1690 -2.2370 50 1 10.4042 -0.8898 -3.8639 51 1 7.9392 -1.6695 -1.6705 52 1 7.5582 -3.2624 -1.0220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085386651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:37 Heat of formation + Delta-G solvation = -73.236399 kcal Electronic energy + Delta-G solvation = -30978.740968 eV Core-core repulsion = 26977.633081 eV Total energy + Delta-G solvation = -4001.107887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80414 -39.41158 -37.95739 -37.44791 -34.33385 -34.07570 -33.48594 -31.66557 -31.14125 -29.53598 -28.03862 -27.59442 -25.44648 -23.58865 -23.40030 -22.39076 -21.70977 -21.26667 -20.56337 -19.98383 -19.16230 -17.61383 -17.22991 -17.04718 -16.14660 -15.94399 -15.40816 -15.01704 -14.74935 -14.32674 -14.21726 -13.91174 -13.75381 -13.64738 -13.55806 -13.50678 -13.42937 -13.22149 -12.74752 -12.54077 -12.30131 -12.25426 -12.12652 -11.76025 -11.67350 -11.37323 -11.09391 -11.04579 -10.96589 -10.93836 -10.88717 -10.69565 -10.55324 -10.45254 -10.31458 -9.97054 -9.91053 -9.26733 -9.20444 -8.92838 -8.81450 -8.70847 -7.05735 -6.09273 -3.10398 1.63806 2.41112 3.42084 3.52378 3.55915 3.62229 3.73227 4.31649 4.36725 4.61133 4.63871 4.66443 4.95150 4.95299 5.02345 5.03894 5.11908 5.19816 5.23775 5.31467 5.39822 5.49645 5.52003 5.53047 5.62870 5.65634 5.68291 5.73355 5.77075 5.82080 5.83717 5.88597 5.91785 5.95634 6.02270 6.03358 6.12699 6.20005 6.32013 6.36455 6.37267 6.38772 6.44695 6.67623 6.78879 6.94256 7.21449 7.51090 7.79743 7.92563 8.24800 8.75387 9.20340 10.07290 10.21421 11.38372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003833 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.765667 B = 7303.794530 C = 9623.648357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.137 3.863 4 H 0.077 0.923 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.092 3.908 8 N -0.592 5.592 9 C 0.521 3.479 10 O -0.514 6.514 11 C 0.510 3.490 12 O -0.530 6.530 13 N -0.674 5.674 14 C 0.138 3.862 15 H 0.087 0.913 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.132 4.132 20 C 0.178 3.822 21 H 0.054 0.946 22 N -0.733 5.733 23 C -0.333 4.333 24 H 0.065 0.935 25 C -0.041 4.041 26 N -0.941 5.941 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.295 1.295 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.415 0.585 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.367 0.633 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 17.131 3.951 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.034 3.966 4 H 0.095 0.905 5 C -0.165 4.165 6 C -0.174 4.174 7 C -0.030 4.030 8 N -0.327 5.327 9 C 0.305 3.695 10 O -0.389 6.389 11 C 0.290 3.710 12 O -0.407 6.407 13 N -0.325 5.325 14 C 0.033 3.967 15 H 0.105 0.895 16 C -0.163 4.163 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.173 4.173 20 C 0.068 3.932 21 H 0.072 0.928 22 N -0.375 5.375 23 C -0.464 4.464 24 H 0.083 0.917 25 C -0.239 4.239 26 N -0.585 5.585 27 Si 0.909 3.091 28 H -0.223 1.223 29 H -0.222 1.222 30 H -0.211 1.211 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.252 0.748 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.200 0.800 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.210 15.503 3.758 17.941 hybrid contribution 0.062 1.320 -0.013 1.322 sum -8.148 16.823 3.745 19.064 Atomic orbital electron populations 1.21705 0.95063 1.01962 1.01642 1.21948 0.96207 0.95918 1.03806 1.21739 0.79555 0.97078 0.98202 0.90457 1.22746 0.98400 0.99179 0.96216 1.22882 0.94385 0.98326 1.01809 1.22768 0.97594 0.96514 0.86095 1.48307 1.07100 1.58468 1.18779 1.19955 0.88200 0.79563 0.81823 1.90766 1.71021 1.39928 1.37141 1.19917 0.87692 0.80261 0.83100 1.90645 1.70898 1.42136 1.37071 1.45776 1.08384 1.55351 1.22958 1.21501 0.78329 0.95343 1.01562 0.89499 1.21875 0.96610 0.96682 1.01145 1.21468 0.94632 0.98471 1.00508 1.21590 0.99784 0.95356 0.99099 1.22199 0.98592 0.95556 1.00915 1.20407 0.92610 0.84771 0.95432 0.92836 1.42406 1.84527 1.02428 1.08094 1.19987 1.45699 0.88148 0.92532 0.91721 1.25730 0.99713 0.99663 0.98815 1.70872 1.51770 1.31647 1.04260 0.83269 0.75800 0.75913 0.74101 1.22310 1.22238 1.21101 0.92396 0.92707 0.92662 0.89953 0.91713 0.89995 0.90195 0.90614 0.89720 0.91100 0.87513 0.74789 0.91739 0.91796 0.92148 0.91913 0.92245 0.92491 0.92556 0.91388 0.79979 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.83 37.16 0.37 -0.99 16 2 C -0.14 -1.70 5.41 -26.73 -0.14 -1.84 16 3 C 0.14 1.55 2.91 -66.95 -0.19 1.36 16 4 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 5 C -0.13 -1.02 5.56 -24.90 -0.14 -1.15 16 6 C -0.14 -1.09 7.10 -24.46 -0.17 -1.27 16 7 C 0.09 1.07 6.25 -2.41 -0.02 1.06 16 8 N -0.59 -8.17 3.06 -163.38 -0.50 -8.67 16 9 C 0.52 8.84 7.73 -11.59 -0.09 8.75 16 10 O -0.51 -9.83 15.26 5.50 0.08 -9.75 16 11 C 0.51 8.90 7.82 -11.58 -0.09 8.81 16 12 O -0.53 -9.43 13.37 5.50 0.07 -9.35 16 13 N -0.67 -11.83 4.90 -54.23 -0.27 -12.10 16 14 C 0.14 2.33 1.98 -67.93 -0.13 2.19 16 15 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 16 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 17 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 18 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 19 C -0.13 -2.28 5.50 -26.73 -0.15 -2.43 16 20 C 0.18 3.42 2.29 -67.93 -0.16 3.27 16 21 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 22 N -0.73 -17.84 4.95 -53.42 -0.26 -18.10 16 23 C -0.33 -9.16 9.93 -15.06 -0.15 -9.31 16 24 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 26 N -0.94 -29.26 13.70 55.49 0.76 -28.50 16 27 Si 1.08 26.09 29.92 -169.99 -5.09 21.00 16 28 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.05 0.41 7.36 -51.93 -0.38 0.03 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.27 6.54 -51.93 -0.34 0.93 16 35 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 1.37 5.88 -51.93 -0.31 1.06 16 42 H 0.42 7.65 8.07 -40.82 -0.33 7.32 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.37 9.57 6.63 -40.82 -0.27 9.30 16 52 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -32.13 404.30 -9.82 -41.95 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -9.08 Total: 15.51 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.63 Total: 1.93 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.27 Total: -67.37 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.16 Total: -19.10 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.13 -9.82 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085386651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.291 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds