Wall clock time and date at job start Tue Mar 31 2020 19:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 H 1.09007 * 109.87154 * 306.49728 * 3 2 1 5 5 C 1.54319 * 110.01056 * 67.59512 * 3 2 1 6 6 C 1.55157 * 102.94242 * 141.68414 * 5 3 2 7 7 C 1.55137 * 101.48378 * 324.33182 * 6 5 3 8 8 N 1.47024 * 109.87947 * 185.48242 * 3 2 1 9 9 C 1.34771 * 125.64679 * 61.45556 * 8 3 2 10 10 O 1.21351 * 120.00724 * 355.38294 * 9 8 3 11 11 C 1.49454 * 119.99799 * 175.38622 * 9 8 3 12 12 O 1.21351 * 119.99948 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00112 * 179.97438 * 11 9 8 14 14 C 1.46499 * 119.99725 * 179.97438 * 13 11 9 15 15 H 1.09001 * 109.47311 * 35.00734 * 14 13 11 16 16 C 1.52994 * 109.47475 * 275.00318 * 14 13 11 17 17 C 1.53002 * 109.47320 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47051 * 60.00152 * 17 16 14 19 19 C 1.53003 * 109.47083 * 300.00158 * 18 17 16 20 20 C 1.53002 * 109.47306 * 59.99998 * 19 18 17 21 21 H 1.09002 * 109.46550 * 60.00156 * 20 19 18 22 22 N 1.46493 * 109.47172 * 179.97438 * 20 19 18 23 23 C 1.36933 * 120.00263 * 275.00364 * 22 20 19 24 24 H 1.08002 * 119.99876 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00032 * 180.02562 * 23 22 20 26 26 N 1.31612 * 119.99963 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 119.99716 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46973 * 59.99683 * 27 25 23 29 29 H 1.48500 * 109.46817 * 299.99620 * 27 25 23 30 30 H 1.48501 * 109.46517 * 179.97438 * 27 25 23 31 31 H 1.09008 * 109.47234 * 184.95796 * 1 2 3 32 32 H 1.08996 * 109.47454 * 304.95484 * 1 2 3 33 33 H 1.09001 * 109.47511 * 64.96102 * 1 2 3 34 34 H 1.09007 * 109.46676 * 240.00117 * 2 1 3 35 35 H 1.08995 * 109.47048 * 120.00095 * 2 1 3 36 36 H 1.08994 * 110.72253 * 260.04729 * 5 3 2 37 37 H 1.09000 * 110.72200 * 23.32349 * 5 3 2 38 38 H 1.08995 * 111.00728 * 82.57282 * 6 5 3 39 39 H 1.09002 * 111.00721 * 206.38923 * 6 5 3 40 40 H 1.08997 * 110.49832 * 278.45456 * 7 6 5 41 41 H 1.09000 * 110.33960 * 156.05896 * 7 6 5 42 42 H 0.97001 * 119.99783 * 0.02562 * 13 11 9 43 43 H 1.09001 * 109.47191 * 300.00489 * 16 14 13 44 44 H 1.08999 * 109.47489 * 60.00163 * 16 14 13 45 45 H 1.09000 * 109.46939 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.47054 * 300.00163 * 17 16 14 47 47 H 1.09001 * 109.47183 * 60.00090 * 18 17 16 48 48 H 1.09003 * 109.47324 * 180.02562 * 18 17 16 49 49 H 1.09001 * 109.47056 * 300.00010 * 19 18 17 50 50 H 1.08993 * 109.47262 * 180.02562 * 19 18 17 51 51 H 0.97006 * 119.99894 * 95.00099 * 22 20 19 52 52 H 0.96994 * 120.00562 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9951 -0.8241 5 6 1.6949 2.1246 1.3406 6 6 2.9519 2.9888 1.6244 7 6 4.0820 2.0814 1.0710 8 7 3.5042 1.4551 -0.1321 9 6 4.2028 0.9694 -1.1773 10 8 3.6270 0.3934 -2.0770 11 6 5.6866 1.1402 -1.2285 12 8 6.2624 1.7166 -0.3291 13 7 6.3853 0.6541 -2.2735 14 6 7.8398 0.8220 -2.3238 15 1 8.2481 0.7580 -1.3151 16 6 8.1750 2.1888 -2.9239 17 6 9.6940 2.3639 -2.9770 18 6 10.3043 1.2621 -3.8455 19 6 9.9691 -0.1048 -3.2454 20 6 8.4501 -0.2799 -3.1923 21 1 8.0415 -0.2158 -4.2009 22 7 8.1291 -1.5889 -2.6183 23 6 8.0974 -2.6988 -3.4197 24 1 8.3085 -2.6091 -4.4751 25 6 7.7927 -3.9391 -2.8758 26 7 7.5350 -4.0484 -1.5898 27 14 7.7487 -5.4531 -3.9693 28 1 9.0816 -5.6523 -4.5928 29 1 6.7280 -5.2668 -5.0317 30 1 7.4019 -6.6437 -3.1523 31 1 -0.3634 -1.0239 0.0888 32 1 -0.3634 0.5887 0.8422 33 1 -0.3634 0.4349 -0.9311 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 0.8104 2.7529 1.2372 37 1 1.5522 1.3820 2.1256 38 1 2.9059 3.9345 1.0846 39 1 3.0767 3.1576 2.6941 40 1 4.3527 1.3198 1.8022 41 1 4.9531 2.6804 0.8056 42 1 5.9250 0.1937 -2.9925 43 1 7.7667 2.2528 -3.9325 44 1 7.7399 2.9738 -2.3054 45 1 9.9328 3.3379 -3.4041 46 1 10.1026 2.2998 -1.9685 47 1 9.8957 1.3262 -4.8540 48 1 11.3866 1.3865 -3.8830 49 1 10.3777 -0.1690 -2.2370 50 1 10.4042 -0.8898 -3.8639 51 1 7.9392 -1.6695 -1.6705 52 1 7.5582 -3.2624 -1.0220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085386651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:36 Heat of formation + Delta-G solvation = -94.180821 kcal Electronic energy + Delta-G solvation = -30979.649186 eV Core-core repulsion = 26977.633081 eV Total energy + Delta-G solvation = -4002.016105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07595 -40.67494 -39.25170 -38.73718 -36.21170 -35.39311 -34.47076 -32.99604 -32.62133 -30.85935 -29.30435 -28.86159 -26.64911 -25.59951 -24.45882 -23.42045 -22.94108 -22.55304 -21.72589 -21.19383 -20.42871 -19.36988 -18.80111 -18.29480 -17.43077 -17.28599 -16.76855 -16.33157 -16.01901 -15.75236 -15.48788 -15.42413 -15.21918 -14.97128 -14.80889 -14.74690 -14.40595 -14.11564 -14.07939 -13.77844 -13.62634 -13.47668 -13.03083 -12.84330 -12.81586 -12.67828 -12.66577 -12.30466 -12.18429 -12.17810 -12.01075 -11.97185 -11.81289 -11.63343 -11.59734 -11.47679 -11.41303 -11.13586 -10.95457 -10.55178 -10.24419 -9.87009 -9.14307 -8.38975 -5.33260 0.26174 1.17783 1.55727 1.65983 1.81405 2.04905 2.39446 2.69278 3.19372 3.40669 3.50927 3.55870 3.62959 3.66396 3.81325 4.01447 4.12378 4.13842 4.15843 4.17086 4.28664 4.30928 4.33961 4.42970 4.47631 4.51203 4.58330 4.68845 4.80136 4.87065 4.89036 4.89338 4.94347 5.00694 5.06400 5.09493 5.11664 5.16053 5.19487 5.20550 5.21455 5.30792 5.33405 5.39365 5.43475 5.52826 5.60396 5.96888 6.17269 6.46509 6.56962 6.85566 7.05812 7.95429 8.08742 9.11816 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003833 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.765667 B = 7303.794530 C = 9623.648357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.128 3.872 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.122 4.122 7 C 0.083 3.917 8 N -0.586 5.586 9 C 0.513 3.487 10 O -0.547 6.547 11 C 0.507 3.493 12 O -0.536 6.536 13 N -0.678 5.678 14 C 0.145 3.855 15 H 0.068 0.932 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.125 4.125 20 C 0.176 3.824 21 H 0.051 0.949 22 N -0.744 5.744 23 C -0.323 4.323 24 H 0.070 0.930 25 C -0.104 4.104 26 N -0.976 5.976 27 Si 1.125 2.875 28 H -0.276 1.276 29 H -0.279 1.279 30 H -0.297 1.297 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.410 0.590 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.045 0.955 50 H 0.048 0.952 51 H 0.354 0.646 52 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 19.576 3.859 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.026 3.974 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.038 4.038 8 N -0.319 5.319 9 C 0.296 3.704 10 O -0.425 6.425 11 C 0.287 3.713 12 O -0.414 6.414 13 N -0.328 5.328 14 C 0.041 3.959 15 H 0.086 0.914 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.166 4.166 20 C 0.067 3.933 21 H 0.069 0.931 22 N -0.385 5.385 23 C -0.454 4.454 24 H 0.088 0.912 25 C -0.295 4.295 26 N -0.624 5.624 27 Si 0.950 3.050 28 H -0.202 1.202 29 H -0.206 1.206 30 H -0.223 1.223 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.245 0.755 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.186 0.814 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.706 18.031 3.669 20.356 hybrid contribution 0.238 0.625 0.038 0.670 sum -8.468 18.656 3.707 20.821 Atomic orbital electron populations 1.21667 0.92565 1.02538 1.02881 1.21901 0.98385 0.96046 1.01412 1.22054 0.77800 0.96943 1.00632 0.90386 1.22781 0.99379 0.99376 0.93888 1.22879 0.92286 0.97617 1.03230 1.22944 0.98899 0.96861 0.85129 1.48520 1.08495 1.56712 1.18206 1.19921 0.88008 0.79958 0.82553 1.90742 1.71369 1.41760 1.38634 1.20119 0.88197 0.80087 0.82859 1.90634 1.71203 1.42468 1.37092 1.45845 1.08630 1.55384 1.22920 1.21437 0.77825 0.96458 1.00215 0.91401 1.21835 0.98059 0.94187 1.01353 1.21473 0.92971 0.99589 1.00518 1.21536 1.01321 0.92738 0.99307 1.22050 0.96346 0.97826 1.00340 1.20639 0.94149 0.83210 0.95298 0.93062 1.42585 1.84837 1.03810 1.07301 1.20324 1.43089 0.89046 0.92955 0.91247 1.27104 1.00226 1.03039 0.99153 1.70995 1.55019 1.30964 1.05424 0.82665 0.77050 0.72379 0.72898 1.20157 1.20560 1.22289 0.92496 0.89980 0.92543 0.94169 0.92285 0.87028 0.89330 0.89668 0.87150 0.91590 0.88857 0.75460 0.90694 0.91520 0.88977 0.92121 0.91254 0.90382 0.93610 0.93359 0.81437 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.83 71.98 0.71 -1.71 16 2 C -0.14 -3.41 5.41 30.60 0.17 -3.24 16 3 C 0.13 2.79 2.91 45.34 0.13 2.92 16 4 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 5 C -0.12 -1.49 5.56 31.78 0.18 -1.32 16 6 C -0.12 -1.61 7.10 32.07 0.23 -1.38 16 7 C 0.08 1.88 6.25 86.94 0.54 2.43 16 8 N -0.59 -16.44 3.06 -789.16 -2.42 -18.85 16 9 C 0.51 18.25 7.73 87.27 0.67 18.93 16 10 O -0.55 -22.26 15.26 -3.25 -0.05 -22.31 16 11 C 0.51 18.45 7.82 87.27 0.68 19.13 16 12 O -0.54 -19.61 13.37 -3.25 -0.04 -19.66 16 13 N -0.68 -24.81 4.90 -443.86 -2.18 -26.99 16 14 C 0.15 5.00 1.98 44.99 0.09 5.09 16 15 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 16 C -0.12 -3.05 5.49 30.59 0.17 -2.88 16 17 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 18 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 19 C -0.12 -4.30 5.50 30.60 0.17 -4.13 16 20 C 0.18 6.85 2.29 45.00 0.10 6.96 16 21 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 22 N -0.74 -37.61 4.95 -322.94 -1.60 -39.21 16 23 C -0.32 -18.15 9.93 84.04 0.83 -17.31 16 24 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 25 C -0.10 -6.16 5.50 84.86 0.47 -5.69 16 26 N -0.98 -63.02 13.70 21.65 0.30 -62.72 16 27 Si 1.12 53.30 29.92 68.60 2.05 55.35 16 28 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 0.99 7.36 -2.39 -0.02 0.97 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.32 6.54 -2.38 -0.02 1.31 16 35 H 0.06 1.47 8.02 -2.39 -0.02 1.45 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.04 7.77 -2.39 -0.02 1.02 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.39 5.88 -2.39 -0.01 2.37 16 42 H 0.41 15.91 8.07 -92.71 -0.75 15.17 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.35 19.52 6.63 -92.70 -0.61 18.90 16 52 H 0.24 15.64 6.77 -92.71 -0.63 15.01 16 Total: -1.00 -73.74 404.30 1.26 -72.48 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: -0.31 Total: 48.88 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.50 Total: 13.02 kcal Atomic # 7 Polarization: -141.88 SS G_CDS: -5.90 Total: -147.78 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.09 Total: -41.97 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 2.05 Total: 55.35 kcal Total: -73.74 1.26 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085386651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -73.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds