Wall clock time and date at job start Tue Mar 31 2020 19:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47708 * 2 1 4 4 C 1.50705 * 109.47379 * 180.02562 * 3 2 1 5 5 O 1.21274 * 119.99633 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.47422 * 125.64505 * 359.94306 * 6 4 3 8 8 C 1.54915 * 104.82903 * 155.91762 * 7 6 4 9 9 C 1.55160 * 101.57907 * 37.01161 * 8 7 6 10 10 C 1.47018 * 125.64796 * 180.02562 * 6 4 3 11 11 H 1.09005 * 110.00440 * 300.49911 * 10 6 4 12 12 C 1.50690 * 109.88602 * 61.59069 * 10 6 4 13 13 O 1.21283 * 119.99807 * 359.26524 * 12 10 6 14 14 N 1.34775 * 120.00341 * 179.25937 * 12 10 6 15 15 C 1.46498 * 120.00104 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47015 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.90553 * 316.24800 * 16 15 14 18 18 C 1.53778 * 113.61726 * 87.50646 * 16 15 14 19 19 C 1.53778 * 87.08449 * 139.98071 * 18 16 15 20 20 H 1.09000 * 113.61263 * 89.11673 * 19 18 16 21 21 N 1.46502 * 113.61376 * 220.01807 * 19 18 16 22 22 C 1.36932 * 119.99884 * 252.49362 * 21 19 18 23 23 H 1.08003 * 119.99927 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00026 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47237 * 90.00024 * 26 24 22 28 28 H 1.48498 * 109.47075 * 210.00469 * 26 24 22 29 29 H 1.48503 * 109.46801 * 330.00289 * 26 24 22 30 30 C 1.53784 * 87.08081 * 334.56700 * 19 18 16 31 31 H 1.08993 * 109.47772 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46804 * 300.00398 * 1 2 3 33 33 H 1.08997 * 109.46981 * 59.99767 * 1 2 3 34 34 H 1.08998 * 109.47111 * 240.00043 * 2 1 3 35 35 H 1.09006 * 109.47236 * 120.00259 * 2 1 3 36 36 H 1.08998 * 109.46799 * 59.99852 * 3 2 1 37 37 H 1.08997 * 109.47090 * 300.00167 * 3 2 1 38 38 H 1.09004 * 110.36874 * 37.08520 * 7 6 4 39 39 H 1.09001 * 110.36974 * 274.75546 * 7 6 4 40 40 H 1.08997 * 111.00363 * 278.93585 * 8 7 6 41 41 H 1.08998 * 111.03840 * 155.09850 * 8 7 6 42 42 H 1.09005 * 110.71849 * 206.13765 * 9 8 7 43 43 H 1.08997 * 110.87299 * 82.93337 * 9 8 7 44 44 H 0.97004 * 119.99767 * 0.02562 * 14 12 10 45 45 H 1.08996 * 109.47131 * 60.00613 * 15 14 12 46 46 H 1.09005 * 109.47637 * 300.00155 * 15 14 12 47 47 H 1.08999 * 113.61111 * 254.53134 * 18 16 15 48 48 H 1.09004 * 113.61682 * 25.42530 * 18 16 15 49 49 H 0.97002 * 120.00147 * 72.49618 * 21 19 18 50 50 H 0.97002 * 119.99808 * 180.02562 * 25 24 22 51 51 H 1.09004 * 113.61451 * 270.88641 * 30 19 18 52 52 H 1.08994 * 113.61477 * 139.97943 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2211 2.6095 -0.0002 7 6 3.6132 3.9526 -0.0004 8 6 4.6950 4.8775 0.6113 9 6 5.9951 4.2655 0.0260 10 6 5.6841 2.7542 -0.0013 11 1 6.1071 2.2728 0.8805 12 6 6.2595 2.1347 -1.2487 13 8 5.5258 1.6076 -2.0579 14 7 7.5894 2.1665 -1.4652 15 6 8.1487 1.5647 -2.6781 16 6 9.6691 1.7361 -2.6780 17 1 9.9835 2.7342 -2.3732 18 6 10.4164 0.6058 -1.9509 19 6 11.4612 0.6786 -3.0769 20 1 12.2655 1.3876 -2.8810 21 7 11.9499 -0.6329 -3.5097 22 6 13.2171 -1.0341 -3.1808 23 1 13.8562 -0.3837 -2.6019 24 6 13.6800 -2.2770 -3.5904 25 7 12.9010 -3.0697 -4.2955 26 14 15.4085 -2.8246 -3.1411 27 1 15.3785 -3.5408 -1.8406 28 1 15.9297 -3.7324 -4.1943 29 1 16.2914 -1.6356 -3.0311 30 6 10.3444 1.2452 -3.9695 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9563 -0.8899 38 1 2.7138 3.9620 0.6154 39 1 3.3800 4.2634 -1.0188 40 1 4.6904 4.8176 1.6996 41 1 4.5635 5.9070 0.2782 42 1 6.8454 4.4727 0.6758 43 1 6.1811 4.6389 -0.9810 44 1 8.1762 2.5878 -0.8178 45 1 7.7274 2.0562 -3.5550 46 1 7.9031 0.5030 -2.7036 47 1 10.8052 0.8966 -0.9750 48 1 9.8668 -0.3352 -1.9253 49 1 11.3758 -1.2172 -4.0294 50 1 13.2243 -3.9384 -4.5814 51 1 9.7751 0.4790 -4.4959 52 1 10.6751 2.0522 -4.6233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086277326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:51 Heat of formation + Delta-G solvation = -51.097002 kcal Electronic energy + Delta-G solvation = -29261.284177 eV Core-core repulsion = 25261.136327 eV Total energy + Delta-G solvation = -4000.147850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90503 -39.25081 -38.37394 -37.42809 -34.67541 -34.56290 -33.28762 -32.06936 -30.61836 -29.92941 -28.12200 -27.08289 -25.06063 -24.42082 -23.74435 -22.17476 -22.08176 -21.03182 -20.59912 -19.40656 -18.91064 -17.69004 -17.40462 -17.00996 -16.31285 -15.96966 -15.75014 -15.34721 -15.04873 -14.68882 -14.51239 -14.27343 -13.94497 -13.82800 -13.59318 -13.51640 -13.21366 -13.16726 -12.86461 -12.72751 -12.29389 -12.06606 -11.97817 -11.85648 -11.83054 -11.75730 -11.43248 -11.39409 -11.33015 -11.20723 -10.99269 -10.81751 -10.50814 -10.22080 -10.12006 -9.95144 -9.87927 -9.80225 -9.47870 -8.96973 -8.87894 -8.82862 -6.94074 -5.76047 -3.04936 2.41382 2.63093 2.66703 3.27431 3.44206 3.48890 3.50959 3.95136 4.01177 4.36047 4.46500 4.60087 4.60228 4.65855 4.73147 4.73982 4.93505 5.00441 5.03027 5.11165 5.14936 5.19524 5.23705 5.26554 5.30851 5.32803 5.37728 5.44376 5.48851 5.53770 5.62217 5.76120 5.84500 5.86948 5.89582 5.91913 5.98005 6.09204 6.11441 6.29780 6.34311 6.39681 6.50687 6.62532 6.85703 7.14490 7.23554 7.51092 7.70591 8.04522 8.26479 8.42396 9.53269 10.12017 10.46127 11.46325 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.001990 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.375385 B =14068.867738 C =15189.864913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.533 3.467 5 O -0.520 6.520 6 N -0.607 5.607 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.124 4.124 10 C 0.118 3.882 11 H 0.100 0.900 12 C 0.503 3.497 13 O -0.523 6.523 14 N -0.724 5.724 15 C 0.134 3.866 16 C -0.126 4.126 17 H 0.088 0.912 18 C -0.161 4.161 19 C 0.166 3.834 20 H 0.075 0.925 21 N -0.713 5.713 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.142 4.142 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.398 0.602 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.080 0.920 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.724 20.779 12.083 33.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.394 6.394 6 N -0.343 5.343 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.163 4.163 10 C 0.010 3.990 11 H 0.118 0.882 12 C 0.287 3.713 13 O -0.398 6.398 14 N -0.376 5.376 15 C 0.011 3.989 16 C -0.145 4.145 17 H 0.106 0.894 18 C -0.202 4.202 19 C 0.054 3.946 20 H 0.093 0.907 21 N -0.351 5.351 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.182 4.182 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.232 0.768 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.099 0.901 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.786 19.644 11.503 32.924 hybrid contribution 1.063 -0.305 0.341 1.158 sum -22.723 19.340 11.844 32.103 Atomic orbital electron populations 1.21780 0.95440 1.02031 1.01612 1.21304 0.95217 0.94614 1.03824 1.21668 0.91208 1.00266 1.03965 1.20405 0.90016 0.81980 0.75386 1.90744 1.70232 1.30379 1.48064 1.48257 1.04967 1.06226 1.74886 1.22362 0.96919 0.81796 1.01288 1.22784 0.93678 0.99263 1.01156 1.22662 0.99139 0.91344 1.03111 1.21480 0.82996 0.97292 0.97189 0.88182 1.20754 0.82571 0.80005 0.87998 1.90712 1.59145 1.43452 1.46492 1.45980 1.06916 1.60007 1.24740 1.21409 0.92833 0.98564 0.86083 1.22631 0.92142 0.99497 1.00266 0.89424 1.23951 0.99757 0.97079 0.99406 1.21521 0.92098 0.88932 0.92081 0.90684 1.42416 1.14703 1.14380 1.63564 1.19301 0.90631 0.99592 1.27995 0.91104 1.24785 0.98386 0.97151 1.00706 1.69666 1.36006 1.10451 1.41845 0.86180 0.84201 0.78233 0.77508 1.21713 1.21771 1.20758 1.23447 0.98795 1.00291 0.95671 0.92326 0.92802 0.92698 0.90986 0.91245 0.89219 0.89026 0.90092 0.91130 0.90063 0.89270 0.88865 0.89834 0.76805 0.91975 0.91325 0.92809 0.90353 0.78052 0.93448 0.90145 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.62 16 2 C -0.11 -1.03 5.22 -26.73 -0.14 -1.17 16 3 C -0.13 -1.09 4.71 -27.88 -0.13 -1.22 16 4 C 0.53 6.67 7.01 -10.98 -0.08 6.59 16 5 O -0.52 -9.05 15.24 -8.88 -0.14 -9.18 16 6 N -0.61 -6.08 2.84 -164.33 -0.47 -6.55 16 7 C 0.10 0.56 6.69 -2.53 -0.02 0.54 16 8 C -0.13 -0.49 7.09 -24.58 -0.17 -0.66 16 9 C -0.12 -0.67 6.38 -24.90 -0.16 -0.83 16 10 C 0.12 1.15 3.26 -68.11 -0.22 0.93 16 11 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.50 6.87 6.68 -10.99 -0.07 6.80 16 13 O -0.52 -9.60 15.03 -8.88 -0.13 -9.73 16 14 N -0.72 -8.60 5.48 -60.30 -0.33 -8.93 16 15 C 0.13 1.88 5.51 -4.04 -0.02 1.86 16 16 C -0.13 -1.72 3.75 -89.80 -0.34 -2.06 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.16 -2.75 7.43 -25.92 -0.19 -2.94 16 19 C 0.17 3.27 4.48 -67.12 -0.30 2.96 16 20 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 21 N -0.71 -18.16 5.40 -52.63 -0.28 -18.44 16 22 C -0.24 -6.85 9.97 -15.06 -0.15 -7.00 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 26 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 C -0.14 -2.32 7.39 -25.91 -0.19 -2.51 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.09 0.50 7.85 -51.93 -0.41 0.10 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.29 7.48 -51.93 -0.39 -0.10 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.49 7.84 -51.93 -0.41 0.09 16 44 H 0.40 3.53 8.44 -40.82 -0.34 3.19 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.15 7.84 -51.93 -0.41 0.75 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.52 7.90 -51.93 -0.41 1.11 16 49 H 0.39 10.50 7.92 -40.82 -0.32 10.18 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 52 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 418.53 15.07 6.31 6.31 Total: -1.00 -37.45 418.53 -10.67 -48.12 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -9.41 Total: 8.60 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.92 Total: 0.14 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.36 Total: -61.86 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.27 Total: -18.91 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -37.45 -10.67 -48.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086277326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.978 kcal (2) G-P(sol) polarization free energy of solvation -37.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds