Wall clock time and date at job start Tue Mar 31 2020 19:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47708 * 2 1 4 4 C 1.50705 * 109.47379 * 180.02562 * 3 2 1 5 5 O 1.21274 * 119.99633 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.47422 * 125.64505 * 359.94306 * 6 4 3 8 8 C 1.54915 * 104.82903 * 155.91762 * 7 6 4 9 9 C 1.55160 * 101.57907 * 37.01161 * 8 7 6 10 10 C 1.47018 * 125.64796 * 180.02562 * 6 4 3 11 11 H 1.09005 * 110.00440 * 300.49911 * 10 6 4 12 12 C 1.50690 * 109.88602 * 61.59069 * 10 6 4 13 13 O 1.21283 * 119.99807 * 359.26524 * 12 10 6 14 14 N 1.34775 * 120.00341 * 179.25937 * 12 10 6 15 15 C 1.46498 * 120.00104 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47015 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.90553 * 316.24800 * 16 15 14 18 18 C 1.53778 * 113.61726 * 87.50646 * 16 15 14 19 19 C 1.53778 * 87.08449 * 139.98071 * 18 16 15 20 20 H 1.09000 * 113.61263 * 89.11673 * 19 18 16 21 21 N 1.46502 * 113.61376 * 220.01807 * 19 18 16 22 22 C 1.36932 * 119.99884 * 252.49362 * 21 19 18 23 23 H 1.08003 * 119.99927 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00026 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47237 * 90.00024 * 26 24 22 28 28 H 1.48498 * 109.47075 * 210.00469 * 26 24 22 29 29 H 1.48503 * 109.46801 * 330.00289 * 26 24 22 30 30 C 1.53784 * 87.08081 * 334.56700 * 19 18 16 31 31 H 1.08993 * 109.47772 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46804 * 300.00398 * 1 2 3 33 33 H 1.08997 * 109.46981 * 59.99767 * 1 2 3 34 34 H 1.08998 * 109.47111 * 240.00043 * 2 1 3 35 35 H 1.09006 * 109.47236 * 120.00259 * 2 1 3 36 36 H 1.08998 * 109.46799 * 59.99852 * 3 2 1 37 37 H 1.08997 * 109.47090 * 300.00167 * 3 2 1 38 38 H 1.09004 * 110.36874 * 37.08520 * 7 6 4 39 39 H 1.09001 * 110.36974 * 274.75546 * 7 6 4 40 40 H 1.08997 * 111.00363 * 278.93585 * 8 7 6 41 41 H 1.08998 * 111.03840 * 155.09850 * 8 7 6 42 42 H 1.09005 * 110.71849 * 206.13765 * 9 8 7 43 43 H 1.08997 * 110.87299 * 82.93337 * 9 8 7 44 44 H 0.97004 * 119.99767 * 0.02562 * 14 12 10 45 45 H 1.08996 * 109.47131 * 60.00613 * 15 14 12 46 46 H 1.09005 * 109.47637 * 300.00155 * 15 14 12 47 47 H 1.08999 * 113.61111 * 254.53134 * 18 16 15 48 48 H 1.09004 * 113.61682 * 25.42530 * 18 16 15 49 49 H 0.97002 * 120.00147 * 72.49618 * 21 19 18 50 50 H 0.97002 * 119.99808 * 180.02562 * 25 24 22 51 51 H 1.09004 * 113.61451 * 270.88641 * 30 19 18 52 52 H 1.08994 * 113.61477 * 139.97943 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2211 2.6095 -0.0002 7 6 3.6132 3.9526 -0.0004 8 6 4.6950 4.8775 0.6113 9 6 5.9951 4.2655 0.0260 10 6 5.6841 2.7542 -0.0013 11 1 6.1071 2.2728 0.8805 12 6 6.2595 2.1347 -1.2487 13 8 5.5258 1.6076 -2.0579 14 7 7.5894 2.1665 -1.4652 15 6 8.1487 1.5647 -2.6781 16 6 9.6691 1.7361 -2.6780 17 1 9.9835 2.7342 -2.3732 18 6 10.4164 0.6058 -1.9509 19 6 11.4612 0.6786 -3.0769 20 1 12.2655 1.3876 -2.8810 21 7 11.9499 -0.6329 -3.5097 22 6 13.2171 -1.0341 -3.1808 23 1 13.8562 -0.3837 -2.6019 24 6 13.6800 -2.2770 -3.5904 25 7 12.9010 -3.0697 -4.2955 26 14 15.4085 -2.8246 -3.1411 27 1 15.3785 -3.5408 -1.8406 28 1 15.9297 -3.7324 -4.1943 29 1 16.2914 -1.6356 -3.0311 30 6 10.3444 1.2452 -3.9695 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9563 -0.8899 38 1 2.7138 3.9620 0.6154 39 1 3.3800 4.2634 -1.0188 40 1 4.6904 4.8176 1.6996 41 1 4.5635 5.9070 0.2782 42 1 6.8454 4.4727 0.6758 43 1 6.1811 4.6389 -0.9810 44 1 8.1762 2.5878 -0.8178 45 1 7.7274 2.0562 -3.5550 46 1 7.9031 0.5030 -2.7036 47 1 10.8052 0.8966 -0.9750 48 1 9.8668 -0.3352 -1.9253 49 1 11.3758 -1.2172 -4.0294 50 1 13.2243 -3.9384 -4.5814 51 1 9.7751 0.4790 -4.4959 52 1 10.6751 2.0522 -4.6233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086277326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:50 Heat of formation + Delta-G solvation = -77.130966 kcal Electronic energy + Delta-G solvation = -29262.413094 eV Core-core repulsion = 25261.136327 eV Total energy + Delta-G solvation = -4001.276768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76503 -40.41990 -39.63819 -38.22769 -36.07912 -35.33404 -35.05391 -32.78985 -32.21623 -30.95078 -28.86534 -28.23709 -26.48882 -25.89264 -24.90802 -23.05040 -22.59565 -22.38316 -21.47574 -20.62977 -20.01338 -19.07675 -18.52041 -18.19169 -17.30262 -16.85807 -16.72142 -16.57038 -16.43832 -15.88652 -15.77272 -15.34586 -15.05446 -14.95327 -14.78780 -14.41000 -14.17018 -14.15786 -13.79767 -13.47567 -13.28168 -13.27670 -13.08414 -12.94395 -12.92753 -12.74717 -12.64712 -12.62403 -12.23606 -12.21405 -12.09261 -11.96793 -11.78613 -11.67660 -11.60947 -11.55936 -11.13944 -10.93017 -10.88226 -10.81206 -10.11056 -9.70350 -9.00095 -7.95915 -5.24845 1.45546 1.48050 1.53926 1.56382 1.60538 1.91433 2.31275 2.55558 3.35387 3.40720 3.51197 3.67553 3.72029 3.78806 3.80843 3.92176 3.95576 4.04491 4.13139 4.21952 4.23062 4.32709 4.40517 4.49464 4.51494 4.56007 4.63523 4.67507 4.70952 4.77949 4.82683 4.88041 4.92861 4.94327 4.95542 5.02064 5.09748 5.19009 5.19178 5.22748 5.26045 5.33346 5.34030 5.41287 5.42366 5.51102 5.71426 6.25982 6.45400 6.56477 7.16731 7.27399 7.30941 8.09247 8.31097 9.27784 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.001990 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.375385 B =14068.867738 C =15189.864913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.123 4.123 4 C 0.518 3.482 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.089 3.911 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.114 3.886 11 H 0.100 0.900 12 C 0.495 3.505 13 O -0.579 6.579 14 N -0.711 5.711 15 C 0.142 3.858 16 C -0.091 4.091 17 H 0.130 0.870 18 C -0.156 4.156 19 C 0.145 3.855 20 H 0.087 0.913 21 N -0.731 5.731 22 C -0.242 4.242 23 H 0.082 0.918 24 C -0.084 4.084 25 N -0.974 5.974 26 Si 0.976 3.024 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.264 1.264 30 C -0.137 4.137 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.417 0.583 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.370 0.630 50 H 0.250 0.750 51 H 0.060 0.940 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.103 25.171 14.168 37.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.162 4.162 4 C 0.309 3.691 5 O -0.465 6.465 6 N -0.343 5.343 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.154 4.154 10 C 0.006 3.994 11 H 0.118 0.882 12 C 0.281 3.719 13 O -0.457 6.457 14 N -0.364 5.364 15 C 0.017 3.983 16 C -0.110 4.110 17 H 0.148 0.852 18 C -0.197 4.197 19 C 0.035 3.965 20 H 0.105 0.895 21 N -0.368 5.368 22 C -0.374 4.374 23 H 0.100 0.900 24 C -0.276 4.276 25 N -0.625 5.625 26 Si 0.805 3.195 27 H -0.216 1.216 28 H -0.224 1.224 29 H -0.189 1.189 30 C -0.177 4.177 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.254 0.746 45 H 0.082 0.918 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.201 0.799 50 H 0.058 0.942 51 H 0.079 0.921 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.159 24.174 13.645 36.800 hybrid contribution 1.146 -1.605 -0.301 1.995 sum -23.013 22.569 13.344 34.886 Atomic orbital electron populations 1.21730 0.92948 1.02418 1.02994 1.21273 0.97272 0.95101 1.01416 1.21707 0.88324 0.99898 1.06261 1.21233 0.91725 0.81827 0.74339 1.90704 1.71731 1.32849 1.51262 1.48476 1.05405 1.07322 1.73140 1.22726 0.98593 0.79739 1.02182 1.22825 0.91356 0.99755 1.01738 1.22742 1.01228 0.87563 1.03904 1.21704 0.83039 1.00150 0.94550 0.88203 1.21611 0.82555 0.79060 0.88694 1.90687 1.60477 1.45849 1.48718 1.45826 1.06916 1.59292 1.24330 1.21146 0.93232 0.96583 0.87310 1.22477 0.91115 1.00097 0.97310 0.85201 1.23735 0.99004 0.97242 0.99697 1.21970 0.93457 0.86881 0.94158 0.89537 1.42664 1.13980 1.16342 1.63854 1.19766 0.91571 0.99504 1.26527 0.90018 1.25668 1.02521 0.97686 1.01681 1.69844 1.37974 1.10698 1.43988 0.85090 0.79739 0.77977 0.76671 1.21629 1.22429 1.18883 1.23327 0.97388 1.00291 0.96665 0.92547 0.90783 0.91814 0.94429 0.92817 0.85582 0.87541 0.87438 0.91219 0.88772 0.86791 0.86112 0.90097 0.74637 0.91796 0.95128 0.91114 0.93534 0.79851 0.94151 0.92113 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.11 -2.17 5.22 30.59 0.16 -2.01 16 3 C -0.12 -1.94 4.71 29.85 0.14 -1.80 16 4 C 0.52 13.26 7.01 87.66 0.61 13.88 16 5 O -0.59 -21.97 15.24 10.79 0.16 -21.80 16 6 N -0.61 -11.60 2.84 -792.20 -2.25 -13.86 16 7 C 0.09 0.72 6.69 86.86 0.58 1.31 16 8 C -0.12 -0.37 7.09 31.99 0.23 -0.15 16 9 C -0.12 -0.85 6.38 31.78 0.20 -0.65 16 10 C 0.11 2.08 3.26 44.59 0.15 2.23 16 11 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 12 C 0.49 13.61 6.68 87.65 0.59 14.20 16 13 O -0.58 -22.31 15.03 10.76 0.16 -22.15 16 14 N -0.71 -16.24 5.48 -463.07 -2.54 -18.78 16 15 C 0.14 3.96 5.51 86.38 0.48 4.43 16 16 C -0.09 -2.32 3.75 -10.27 -0.04 -2.35 16 17 H 0.13 2.35 8.14 -2.39 -0.02 2.34 16 18 C -0.16 -5.24 7.43 31.12 0.23 -5.01 16 19 C 0.14 5.61 4.48 45.52 0.20 5.81 16 20 H 0.09 3.16 8.10 -2.39 -0.02 3.14 16 21 N -0.73 -38.05 5.40 -320.44 -1.73 -39.78 16 22 C -0.24 -13.66 9.97 84.04 0.84 -12.83 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 24 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 25 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16 26 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 30 C -0.14 -4.36 7.39 31.12 0.23 -4.13 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 36 H 0.13 1.05 7.85 -2.39 -0.02 1.03 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 0.32 7.48 -2.39 -0.02 0.30 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.08 0.68 7.84 -2.39 -0.02 0.66 16 44 H 0.42 6.32 8.44 -92.71 -0.78 5.54 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.03 1.10 7.84 -2.38 -0.02 1.08 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.87 7.90 -2.38 -0.02 1.85 16 49 H 0.37 21.12 7.92 -92.71 -0.73 20.39 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 51 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 52 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -89.18 418.53 1.28 -87.90 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.61 Total: 33.61 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.78 Total: 7.42 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.24 Total: -134.11 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: 0.33 Total: -43.95 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -89.18 1.28 -87.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086277326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.770 kcal (2) G-P(sol) polarization free energy of solvation -89.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds